Cmc12g0325081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0325081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon gag protein
Location	CMiso1.1chr12: 14982524 .. 14983569 (-)
RNA-Seq Expression	Cmc12g0325081
Synteny	Cmc12g0325081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGGCTTCGGCAAAAGGTATGATCCCCACAGCAGCACTACAACTTTGGATGGAGAGACCTTCTTTACATGAAATGGTAATAAAAAATTAAGAACAAAATGAATGGAGGCCTTCCTACACTTCTTCTTCTTTTCAAGGCATGTCTCTTGAAGATATTGTAAAAACTTTAGCTAGTAGCTCTCTTAAGTTTCAACAAGACCTTCACCAACTCAACCAAGAAACCAAATCATTTCAACTAGAAGCAAGGACCGGTCTCACAAATATTGACAACTGAATTACACAATTGGTTACGACAGTTAGTAAACTTGAAAACAAAGTCAAATTGCCCACCCAAATTGAATATGCCAACGTTAGTGCTATAACACTTAAAAGTGATTACTCCTACCTTCCGCCACTCAAGAGCCAATTGTGAATACGGATCCTCCTCGATCCAAAGATCCAAGTTGAGGTAAAGGATGACGAAAAAAATGAAACACAAGATGTCGACCAAAAAGGTAAGTGCAAATCCTTTGCCTTCAATTCCTCGTTATATTCCTAAAGCTCTCTTTCCTAGTAGGTTGACACCTAAGAAAAAGGAAGCTTGCAAGGATGAAGATCTTTTGGAAACATTCACAAAGGTCCAAATTAACATTCCACTCCCTAGTGCAATTCAACAAATTCCAAGGTGCAAATCTTTCAAGGAGCCTTGAACTAGAAAGAGGAATGTTAAGGAAAAGAAAAGTGTGATGGTAAGTTGAAATGTTTCAAAACTTTCAAAGAAAAATATTCCGAAAAATGTAGAGATACGGATATGTTCCCTTTACCTTGCTTAATGGAGTTTGAAAAATTAATTATGCTATCTTAAACTTAGGTGCTTCTATCAAGATTTGAAATTGAATAACATGGAAAAGACAAATGACATTTTATTAGGAAGACCTTTCATGAAAACGGCTAAAACCATTATTGATGTAGAGGCCTCTCTTCATAGAATTTGATGGGATGTCTTTCTTTCAACATCAAGGATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAG

mRNA sequence

TGGGGGCTTCGGCAAAAGGTATGATCCCCACAGCAGCACTACAACTTTGGATGGAGAGACCTTCTTTACATGAAATGGTAATAAAAAATTAAGAACAAAATGAATGGAGGCCTTCCTACACTTCTTCTTCTTTTCAAGGCATGTCTCTTGAAGATATTGTAAAAACTTTAGCTAGTAGCTCTCTTAAGTTTCAACAAGACCTTCACCAACTCAACCAAGAAACCAAATCATTTCAACTAGAAGCAAGGACCGGTCTCACAAATATTGACAACTGAATTACACAATTGGTTACGACAGTTAGTAAACTTGAAAACAAAGTCAAATTGCCCACCCAAATTGAATATGCCAACGTTAGTGCTATAACACTTAAAAGTGATTACTCCTACCTTCCGCCACTCAAGAGCCAATTGTGAATACGGATCCTCCTCGATCCAAAGATCCAAGTTGAGGTAAAGGATGACGAAAAAAATGAAACACAAGATGTCGACCAAAAAGGTAAGTGCAAATCCTTTGCCTTCAATTCCTCGTTATATTCCTAAAGCTCTCTTTCCTAGTAGGTTGACACCTAAGAAAAAGGAAGCTTGCAAGGATGAAGATCTTTTGGAAACATTCACAAAGGTCCAAATTAACATTCCACTCCCTAGTGCAATTCAACAAATTCCAAGGTGCAAATCTTTCAAGGAGCCTTGAACTAGAAAGAGGAATGTTAAGGAAAAGAAAAGTGTGATGGTGCTTCTATCAAGATTTGAAATTGAATAACATGGAAAAGACAAATGACATTTTATTAGGAAGACCTTTCATGAAAACGGCTAAAACCATTATTGATGTAGAGGCCTCTCTTCATAGAATTTGATGGGATGTCTTTCTTTCAACATCAAGGATGCAATGAAATTCCTGGTAGAAAATTTGTCTTTAAGTTTTTAG

Coding sequence (CDS)

ATGACGAAAAAAATGAAACACAAGATGTCGACCAAAAAGGTAAGTGCAAATCCTTTGCCTTCAATTCCTCGTTATATTCCTAAAGCTCTCTTTCCTAGTAGGTTGACACCTAAGAAAAAGGAAGCTTGCAAGGATGAAGATCTTTTGGAAACATTCACAAAGGTCCAAATTAACATTCCACTCCCTAGTGCAATTCAACAAATTCCAAGGTGCAAATCTTTCAAGGAGCCTTGA

Protein sequence

MTKKMKHKMSTKKVSANPLPSIPRYIPKALFPSRLTPKKKEACKDEDLLETFTKVQINIPLPSAIQQIPRCKSFKEP

Homology

[Close]

BLAST of Cmc12g0325081 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRLTPKKKE  K+E+LLE   K
Sbjct: 385 KNESKEEKVETNPSPSNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRK 444

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQ+PRC  F
Sbjct: 445 VQINLPLLDAIQQVPRCAKF 464

[Close]

BLAST of Cmc12g0325081 vs. NCBI nr
Match: KAA0066512.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NPLPS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 186 KNESKEEKVETNPLPSNSKNDKSPLNDFTPYIPKPHFPSRLAPKKKETPKEEELLEMFRK 245

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN PL  AIQQ+PR   F
Sbjct: 246 VQINFPLLDAIQQVPRYAKF 265

[Close]

BLAST of Cmc12g0325081 vs. NCBI nr
Match: KAA0041664.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 5.0e-10
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NPLPS  +           YIPK  FPS L PKKKE  K+E+LLE F K
Sbjct: 266 KNESKEEKVEINPLPSNSKNDKSPLNDFTPYIPKPHFPSSLAPKKKETSKEEELLEMFRK 325

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL +AIQQ+PR   F
Sbjct: 326 VQINLPLLNAIQQVPRYAKF 345

[Close]

BLAST of Cmc12g0325081 vs. NCBI nr
Match: TYK09433.1 (uncharacterized protein E5676_scaffold499G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 57  KNESKEEKVETNPSPSNSKNDKSPLNDFTPYIPKPPFPSRLAPKKKETPKEEELLEMFKK 116

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQIPR   F
Sbjct: 117 VQINLPLLDAIQQIPRYAKF 136

[Close]

BLAST of Cmc12g0325081 vs. NCBI nr
Match: KAA0046065.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 313 KNESKEEKVETNPSPSNSKNDKSPLNDFTPYIPKPPFPSRLAPKKKETPKEEELLEMFKK 372

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQIPR   F
Sbjct: 373 VQINLPLLDAIQQIPRYAKF 392

[Close]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRLTPKKKE  K+E+LLE   K
Sbjct: 385 KNESKEEKVETNPSPSNSKNEKSPLNDFTPYIPKPPFPSRLTPKKKETPKEEELLEMIRK 444

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQ+PRC  F
Sbjct: 445 VQINLPLLDAIQQVPRCAKF 464

[Close]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL
Match: A0A5D3C4I5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00210 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NPLPS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 186 KNESKEEKVETNPLPSNSKNDKSPLNDFTPYIPKPHFPSRLAPKKKETPKEEELLEMFRK 245

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN PL  AIQQ+PR   F
Sbjct: 246 VQINFPLLDAIQQVPRYAKF 265

[Close]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL
Match: A0A5A7TE06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001460 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NPLPS  +           YIPK  FPS L PKKKE  K+E+LLE F K
Sbjct: 266 KNESKEEKVEINPLPSNSKNDKSPLNDFTPYIPKPHFPSSLAPKKKETSKEEELLEMFRK 325

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL +AIQQ+PR   F
Sbjct: 326 VQINLPLLNAIQQVPRYAKF 345

[Close]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL
Match: A0A5D3CC51 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00170 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 57  KNESKEEKVETNPSPSNSKNDKSPLNDFTPYIPKPPFPSRLAPKKKETPKEEELLEMFKK 116

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQIPR   F
Sbjct: 117 VQINLPLLDAIQQIPRYAKF 136

[Close]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL
Match: A0A5A7TXC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00170 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6   KHKMSTKKVSANPLPSIPR-----------YIPKALFPSRLTPKKKEACKDEDLLETFTK 65
           K++   +KV  NP PS  +           YIPK  FPSRL PKKKE  K+E+LLE F K
Sbjct: 313 KNESKEEKVETNPSPSNSKNDKSPLNDFTPYIPKPPFPSRLAPKKKETPKEEELLEMFKK 372

Query: 66  VQINIPLPSAIQQIPRCKSF 75
           VQIN+PL  AIQQIPR   F
Sbjct: 373 VQINLPLLDAIQQIPRYAKF 392

The following BLAST results are available for this feature:

BLAST of Cmc12g0325081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025369.1	6.0e-11	52.50	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0066512.1	3.0e-10	52.50	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotranspos...	[more]
KAA0041664.1	5.0e-10	51.25	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK09433.1	6.6e-10	52.50	uncharacterized protein E5676_scaffold499G00170 [Cucumis melo var. makuwa]	[more]
KAA0046065.1	6.6e-10	52.50	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0325081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIP6	2.9e-11	52.50	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C4I5	1.4e-10	52.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TE06	2.4e-10	51.25	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CC51	3.2e-10	52.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXC8	3.2e-10	52.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Cmc12g0325081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0325081.1	Cmc12g0325081.1	mRNA