Cmc12g0324771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0324771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr12: 14681491 .. 14683537 (+)
RNA-Seq Expression	Cmc12g0324771
Synteny	Cmc12g0324771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATGAATTTGAGTCAACCCAAATAAAGAAGGATTTGCGTATCTTCATTTATTTGAATATGTTGTTGGAATTAATTTATCCATCTCCCCCTATGAAGTACCCTATTATCCTATATACTTACTCTTCATTTTCTATCTTTATATTTAATACAACATCCTTTCCTCTTTGCTCATAACTTGTACAATATGAGCTATGCAGGTAGTTTTATTCTCTCTCTCTCTCTCTTTCATTTGATTTGATTTGAAGATTGTCAAAAAAATTATTGTTAAACAAAAAAGTAGCTTACCAAAGTCTCTTCTTGTTCTATGTAGGTTGTAAAGGAAGTAAAGACAAAATGCATCCAAAGCTAAACTTTTTAAGTTTTTAACCTTTCCCTTCCTCCCGAACACCATCTTCTAAACCCTAGCCTTCTTGCACAAATTAAAATGGGGGATACTGGTCGTTCTAGAGATCTCCCATCCTGCACTATCTTGTACCCATCTTCCTCACTACTACTCATCGATAACCTCAAAGGCATCCTCAAGTTCTTGTTATACACAACCATCATAACTGATGGTCAGAAGAAATTGAAGGAGAGTAAAGAAAAAAATTGTCATCTCGCCGATCTGTCCGTGCACAGTCTCTCTTCATTCTCCCTATCAATGTTGTGTCTTTCTCACACTCTCTTTGAACTGTCAATATTTCCATTATCAATGGTCTATTCTGTCAATGTATAACCTTAATTAGTCATCTTGATCCTAATTATCTACAATAACTATTATGCATGTTGTTCTTTGACTTTGTAAAGTCAAAGTTGACAATGATGAGGTGGAAAAATAAGCTTGTGAGTCAAGTTAGGTTGCCTGTTGTTGGTTTTGGTTTGTGTATTTTTATAGTACTGTCGAAAATTAAACATGTTTTAATTAGATAAGTTAAATGTGAATTGATATATGAGTCGAAAAAAAATGATTTATGCTTTTTAACTACTTTAGTTAGTTAATTAAATGTAGGATCTTTTTAATTGTTATGTTTAATTTAGTGTGAGTGATGTATGCACAAAACAATCTTATAAATAAGATTTGATATATGGTATTGAAAAAACAATCAAGTGAAGAAGAATACACAAACAAAGTTAATTATATTTAAGAGTATTCCAAATACCTCTTTTTTAATTTTTGTTTTTAAATATTCTATTTGGTAATTATTTATTTAGGGATGTCCATCACACAAACACATTTAATAGAAGTGGAATGAATAAAAATAGGAAAAAAAAAGACCTAACTAAAAAGAAAAAGTTAAAGTTTTGTTTGAGAATCACTTTTTTAGTTTTGTATTATGATGCTATACAAAACCATAAATATCATACATCCCTCCCATACAACTTACTCTCAACTTGAAAGACGGTGTGAAGCCAACAGATACTGTTCTCCTACTCAACAATACCTGTTAACCCTACTAGAACTATAAGTAACCAACTTAAAACATAATATAAGCAAAAATAAAATAGACTTGTATATTAATGTAGTGAAACCCAAAAACAACTATGAATCTAATATAGACATAAGTACATTAACCAAACCGTCAAAGATACTAGTACAAACTCCTAGCAACCCACATCTAATACTACTAATACAAACCATGTACATGCAGGAAATAGTACTGTACAATTGAAGAATTTGATGAAGACCTGAAAGGATCACGATCGTGGCTATCTGATTGAGTGTAGATCAATTGAAGTGATCGAGTTGAATGAATTAACATCTGAAGAAGGAACAGAGATTGAAGAAATAGAGGAGAGATTTATTCCTGTACTAAATCAATATAATGATGTTTTTTATTAGCCATATACACCTTAAGGATGGCACATCATATACACCTTAAAGATGGTACGAATCCTGTTAATGTCAGACCATATTGTTACGCCTATCACCAGAAAGAAGAAATGGAAAAACTGGTCGGAGAGATGCTAGCCTCGGGTGTCATAAGACCAAGTGTGAGTCCTTATTCAAGCTCGGTGTTATTAGTTAAGAAAAAAGATGGAAGTTGGAGATTTTGCGTAGATTACTGA

mRNA sequence

TCATGAATTTGAGTCAACCCAAATAAAGAAGGATTTGCGTATCTTCATTTATTTGAATATGTTGTTGGAATTAATTTATCCATCTCCCCCTATGAAGTACCCTATTATCCTATATACTTACTCTTCATTTTCTATCTTTATATTTAATACAACATCCTTTCCTCTTTGCTCATAACTTGTACAATATGAGCTATGCAGGTTGTAAAGGAAGTAAAGACAAAATGCATCCAAAGCTAAACTTTTTAAGTTTTTAACCTTTCCCTTCCTCCCGAACACCATCTTCTAAACCCTAGCCTTCTTGCACAAATTAAAATGGGGGATACTGGTCGTTCTAGAGATCTCCCATCCTGCACTATCTTGTACCCATCTTCCTCACTACTACTCATCGATAACCTCAAAGGCATCCTCAAGTTCTTGTTATACACAACCATCATAACTGATGGTCAGAAGAAATTGAAGGAGAGTAAAGAAAAAAATTGTCATCTCGCCGATCTGTCCGTGCACAGTCTCTCTTCATTCTCCCTATCAATGTTGTGTCTTTCTCACACTCTCTTTGAACTGTCAATATTTCCATTATCAATGGTCTATTCTGTCAATGTATAACCTTAATTAGTCATCTTGATCCTAATTATCTACAATAACTATTATGCATGTTGTTCTTTGACTTTGTAAAGTCAAAGTTGACAATGATGAGGTGGAAAAATAAGCTTGTGAGTCAAGTTAGGTTGCCTGTTGTTGGTTTTGGTTTGTGTATTTTTATAGTACTGTCGAAAATTAAACATGTTTTAATTAGATAAGTTAAATGTGAATTGATATATGAGTCGAAAAAAAATGATTTATGCTTTTTAACTACTTTAGTTAGTTAATTAAATGTAGGATCTTTTTAATTGTTATGTTTAATTTAGTGTGAGTGATGTATGCACAAAACAATCTTATAAATAAGATTTGATATATGGTATTGAAAAAACAATCAAGTGAAGAAGAATACACAAACAAAGTTAATTATATTTAAGAGTATTCCAAATACCTCTTTTTTAATTTTTGTTTTTAAATATTCTATTTGGTAATTATTTATTTAGGGATGTCCATCACACAAACACATTTAATAGAAGTGGAATGAATAAAAATAGGAAAAAAAAAGACCTAACTAAAAAGAAAAAGTTAAAGTTTTGTTTGAGAATCACTTTTTTAGTTTTGTATTATGATGCTATACAAAACCATAAATATCATACATCCCTCCCATACAACTTACTCTCAACTTGAAAGACGGTGTGAAGCCAACAGATACTGTTCTCCTACTCAACAATACCTGTTAACCCTACTAGAACTATAAGTAACCAACTTAAAACATAATATAAGCAAAAATAAAATAGACTTGTATATTAATGTAGTGAAACCCAAAAACAACTATGAATCTAATATAGACATAAGTACATTAACCAAACCGTCAAAGATACTAGTACAAACTCCTAGCAACCCACATCTAATACTACTAATACAAACCATGTACATGCAGGAAATAGTACTGTACAATTGAAGAATTTGATGAAGACCTGAAAGGATCACGATCGTGGCTATCTGATTGAGTGTAGATCAATTGAAGTGATCGAGTTGAATGAATTAACATCTGAAGAAGGAACAGAGATTGAAGAAATAGAGGAGAGATTTATTCCTGTACTAAATCAATATAATGATGTTTTTTATTAGCCATATACACCTTAAGGATGGCACATCATATACACCTTAAAGATGGTACGAATCCTGTTAATGTCAGACCATATTGTTACGCCTATCACCAGAAAGAAGAAATGGAAAAACTGGTCGGAGAGATGCTAGCCTCGGGTGTCATAAGACCAAGTGTGAGTCCTTATTCAAGCTCGGTGTTATTAGTTAAGAAAAAAGATGGAAGTTGGAGATTTTGCGTAGATTACTGA

Coding sequence (CDS)

ATGGCACATCATATACACCTTAAAGATGGTACGAATCCTGTTAATGTCAGACCATATTGTTACGCCTATCACCAGAAAGAAGAAATGGAAAAACTGGTCGGAGAGATGCTAGCCTCGGGTGTCATAAGACCAAGTGTGAGTCCTTATTCAAGCTCGGTGTTATTAGTTAAGAAAAAAGATGGAAGTTGGAGATTTTGCGTAGATTACTGA

Protein sequence

MAHHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGSWRFCVDY

Homology

[Close]

BLAST of Cmc12g0324771 vs. NCBI nr
Match: TYK01212.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHI LKDGTNPVNVRPY YAYHQKEEMEKLVGEMLAS VIRPSVSPYSS +LLVKKKDGS
Sbjct: 451 HHIQLKDGTNPVNVRPYRYAYHQKEEMEKLVGEMLASSVIRPSVSPYSSPMLLVKKKDGS 510

Query: 63  WRFCVDY 70
           WRFC+DY
Sbjct: 511 WRFCIDY 517

[Close]

BLAST of Cmc12g0324771 vs. NCBI nr
Match: KAA0066203.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHI LKDGTNPVNVRPY YAYHQKEEMEKLVGEMLAS VIRPSVSPYSS +LLVKKKDGS
Sbjct: 345 HHIQLKDGTNPVNVRPYRYAYHQKEEMEKLVGEMLASSVIRPSVSPYSSPMLLVKKKDGS 404

Query: 63  WRFCVDY 70
           WRFC+DY
Sbjct: 405 WRFCIDY 411

[Close]

BLAST of Cmc12g0324771 vs. NCBI nr
Match: KAA0041992.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17927.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHIHLK+GTNPVNVRPY YAYHQKEEME+LV EM ASG+IRPSVSPYSS +LLVKKKDG+
Sbjct: 477 HHIHLKEGTNPVNVRPYRYAYHQKEEMERLVSEMFASGIIRPSVSPYSSPILLVKKKDGN 536

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 537 WRFCVDY 543

[Close]

BLAST of Cmc12g0324771 vs. NCBI nr
Match: KAA0040843.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17819.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHIHLK+GTNPVNVRPY YAYH+KEEME+LV EMLASG+IRPSV PYSS VLLVKKKDGS
Sbjct: 364 HHIHLKEGTNPVNVRPYQYAYHKKEEMERLVSEMLASGIIRPSVRPYSSPVLLVKKKDGS 423

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 424 WRFCVDY 430

[Close]

BLAST of Cmc12g0324771 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 9.1e-27
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           H IHLK+GTNPVNVRPY YAYHQKEEME+LV EMLASG+IRPS SPYSS VLLVKKKDGS
Sbjct: 623 HQIHLKEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGS 682

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 683 WRFCVDY 689

[Close]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           H I +K G     ++PY      ++E+ K+V ++L +  I PS SP SS V+LV KKDG+
Sbjct: 586 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 645

Query: 63  WRFCVDY 70
           +R CVDY
Sbjct: 646 FRLCVDY 652

[Close]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           H I +K G     ++PY      ++E+ K+V ++L +  I PS SP SS V+LV KKDG+
Sbjct: 612 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 671

Query: 63  WRFCVDY 70
           +R CVDY
Sbjct: 672 FRLCVDY 678

[Close]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot
Match: P92522 (Uncharacterized mitochondrial protein AtMg00850 OS=Arabidopsis thaliana OX=3702 GN=AtMg00850 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-06
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 25 QKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGSW 64
          ++  ++  +GEML + +I+PS+SPYSS VLLV+KKDG W
Sbjct: 41 RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

[Close]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-05
Identity = 22/63 (34.92%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 12  NPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKK-----DGSWRFC 70
           +P+  + Y Y  + + E+E+ + E+L  G+IRPS SPY+S + +V KK     +  +R  
Sbjct: 122 DPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMV 181

[Close]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot
Match: P03364 (Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-05
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 11   TNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGSWRFCVD 69
            T+PV V  +   Y +      LV E LA+G I P+ SP+++ + ++KKK GSWR   D
Sbjct: 1018 TDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQD 1075

[Close]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL
Match: A0A5D3BR14 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75441G00030 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHI LKDGTNPVNVRPY YAYHQKEEMEKLVGEMLAS VIRPSVSPYSS +LLVKKKDGS
Sbjct: 451 HHIQLKDGTNPVNVRPYRYAYHQKEEMEKLVGEMLASSVIRPSVSPYSSPMLLVKKKDGS 510

Query: 63  WRFCVDY 70
           WRFC+DY
Sbjct: 511 WRFCIDY 517

[Close]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL
Match: A0A5A7VDE8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002200 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.2e-28
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHI LKDGTNPVNVRPY YAYHQKEEMEKLVGEMLAS VIRPSVSPYSS +LLVKKKDGS
Sbjct: 345 HHIQLKDGTNPVNVRPYRYAYHQKEEMEKLVGEMLASSVIRPSVSPYSSPMLLVKKKDGS 404

Query: 63  WRFCVDY 70
           WRFC+DY
Sbjct: 405 WRFCIDY 411

[Close]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL
Match: A0A5D3D216 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002240 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHIHLK+GTNPVNVRPY YAYHQKEEME+LV EM ASG+IRPSVSPYSS +LLVKKKDG+
Sbjct: 477 HHIHLKEGTNPVNVRPYRYAYHQKEEMERLVSEMFASGIIRPSVSPYSSPILLVKKKDGN 536

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 537 WRFCVDY 543

[Close]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL
Match: A0A5A7TCK3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00700 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           HHIHLK+GTNPVNVRPY YAYH+KEEME+LV EMLASG+IRPSV PYSS VLLVKKKDGS
Sbjct: 364 HHIHLKEGTNPVNVRPYQYAYHKKEEMERLVSEMLASGIIRPSVRPYSSPVLLVKKKDGS 423

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 424 WRFCVDY 430

[Close]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3   HHIHLKDGTNPVNVRPYCYAYHQKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGS 62
           H IHLK+GTNPVNVRPY YAYHQKEEME+LV EMLASG+IRPS SPYSS VLLVKKKDGS
Sbjct: 623 HQIHLKEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGS 682

Query: 63  WRFCVDY 70
           WRFCVDY
Sbjct: 683 WRFCVDY 689

[Close]

BLAST of Cmc12g0324771 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 25 QKEEMEKLVGEMLASGVIRPSVSPYSSSVLLVKKKDGSW 64
          ++  ++  +GEML + +I+PS+SPYSS VLLV+KKDG W
Sbjct: 41 RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc12g0324771 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01212.1	1.1e-27	91.04	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066203.1	1.1e-27	91.04	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0041992.1	3.1e-27	86.57	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17927.1 Ty3/gyp...	[more]
KAA0040843.1	4.1e-27	88.06	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17819.1 Ty3/gyp...	[more]
TYJ96875.1	9.1e-27	88.06	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp...	[more]

BLAST of Cmc12g0324771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.2e-08	43.28	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.2e-08	43.28	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P92522	4.1e-06	53.85	Uncharacterized mitochondrial protein AtMg00850 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8I7P9	3.5e-05	34.92	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P03364	4.5e-05	39.66	Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3	[more]

BLAST of Cmc12g0324771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR14	5.2e-28	91.04	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VDE8	5.2e-28	91.04	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D216	1.5e-27	86.57	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TCK3	2.0e-27	88.06	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BEL2	4.4e-27	88.06	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc12g0324771 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	2.9e-07	53.85	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..69 e-value: 2.3E-25 score: 90.9
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 3..68
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..68
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0324771.1	Cmc12g0324771.1	mRNA