Cmc12g0324481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0324481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	AP complex subunit sigma
Location	CMiso1.1chr12: 14125682 .. 14126542 (-)
RNA-Seq Expression	Cmc12g0324481
Synteny	Cmc12g0324481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGGTCGGTGATGGTGATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGGTTCCTTTCTGGGATTTGTGTTGATTTTTTTGTACTGTTTGGGCCATTTCTATCGAATGATCTGTCTGATGATGAATTCATGAATCCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAACGTCTATAGAGGTTGGCAATTCTATATTTAATATTTCCAATTAGAATTTAGTAAATTACTAAAATGGTCAGTGGTATTTCCACTATTGTAACTATGGTTTCTTTAACTTGTATTTCTATTTTGATATCTTTTGTTTCCTATTTTGGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGTAATATTTCCTTATCCAATAATTTTCTTATAGTACTTATGTTTAGAATGTACTTGAATTGATGATTCTTTGAGAAGCTAGAAACTTGTCAAAAATGAATGTTGGTTGGTATTGTTCAATAAGTTGTAGTGCAATTATAGAGTGGGCTAGGCTAGTTGATTAGTGGGACTGGCAAATGCTAATGAGTTATAACAGATAAACTAGTTTTATGTGGTTCCTTGTATCGAAATTGCTTTAACTTCTCCTTCAAATGAACTATGGGGATTGGTATTTTCTTTCTGCTGCAGGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGAATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA

mRNA sequence

ATGATACGGTCGGTGATGGTGATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAACGTCTATAGAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGAATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA

Coding sequence (CDS)

ATGATACGGTCGGTGATGGTGATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAACGTCTATAGAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGAATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAA

Protein sequence

MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI

Homology

[Close]

BLAST of Cmc12g0324481 vs. NCBI nr
Match: TYK30832.1 (AP-3 complex subunit sigma-like [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
           MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS
Sbjct: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60

Query: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI 115
           RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI
Sbjct: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI 114

[Close]

BLAST of Cmc12g0324481 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
           MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS
Sbjct: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60

Query: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF 101
           RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF
Sbjct: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF 100

[Close]

BLAST of Cmc12g0324481 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Sbjct: 61 RLVYKHFATLYFVLVFNSSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. NCBI nr
Match: KAA0058373.1 (AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Sbjct: 61 RLVYKHFATLYFVLVFNSSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. NCBI nr
Match: XP_011655957.1 (AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741535.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741536.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741537.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741538.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741539.1 AP-3 complex subunit sigma [Cucumis sativus] >KAE8648882.1 hypothetical protein Csa_008325 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAEN+SNFVE +SIFG DS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
           LVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Sbjct: 61 HLVYKHFATLYFVLVFNSSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.8e-33
Identity = 66/90 (73.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MI++VM+MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E +S+FG DS
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKH+ATLYF+LVF+ SEN+LAMLDLIQ
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSD 60
          MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61 SRLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
           +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQ 91

[Close]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSD 60
          MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61 SRLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
           +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQ 91

[Close]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSD 60
          MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61 SRLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
           +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQ 91

[Close]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIF-GSD 60
          MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD
Sbjct: 1  MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 61 SRLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
           +L+Y+H+ATLYF+   +SSE++L +LDLIQ
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQ 91

[Close]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL
Match: A0A5D3E4J0 (AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00260 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
           MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS
Sbjct: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60

Query: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI 115
           RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI
Sbjct: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI 114

[Close]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
           MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS
Sbjct: 1   MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60

Query: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF 101
           RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF
Sbjct: 61  RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILYDGF 100

[Close]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL
Match: A0A0A0KRY4 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_5G628680 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 8   MNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSRLVYKHF 67
           MNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAEN+SNFVE +SIFG DS LVYKHF
Sbjct: 1   MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHF 60

Query: 68  ATLYFLLVFNSSENKLAMLDLIQRTSNILYDGFVTSRLLIMEMLQGI 115
           ATLYF+LVFNSSEN+LAMLDLIQ TSNIL DGFVTS LLIME+LQGI
Sbjct: 61  ATLYFVLVFNSSENELAMLDLIQGTSNILCDGFVTSGLLIMEILQGI 107

[Close]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.1e-38
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Sbjct: 61 RLVYKHFATLYFVLVFNSSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL
Match: A0A5A7UR76 (AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00170 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.1e-38
Identity = 83/90 (92.22%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS
Sbjct: 1  MIRSVIVMNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKHFATLYF+LVFNSSEN+LAMLDLIQ
Sbjct: 61 RLVYKHFATLYFVLVFNSSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-34
Identity = 66/90 (73.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MI++VM+MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E +S+FG DS
Sbjct: 1  MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQ 91
          RLVYKH+ATLYF+LVF+ SEN+LAMLDLIQ
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQ 90

[Close]

BLAST of Cmc12g0324481 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 27/96 (28.12%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MI  V++++ +GK +  K+Y     +++ ++IR +  V+ +R   + NF+E +       
Sbjct: 1  MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY----- 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL 97
          ++VYK +A+LYF +  + ++N+L +L++I     IL
Sbjct: 61 KVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEIL 91

[Close]

BLAST of Cmc12g0324481 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 28/96 (29.17%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MI  V++++ +GK +  K+Y     +++ ++IR +  V+ +R   + NFVE +       
Sbjct: 1  MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL 97
          ++VYK +A+LYF +  +  +N+L +L++I     IL
Sbjct: 61 KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEIL 91

[Close]

BLAST of Cmc12g0324481 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 28/96 (29.17%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDS 60
          MI  V++++ +GK +  K+Y     +++ ++IR +  V+ +R   + NFVE +       
Sbjct: 1  MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY----- 60

Query: 61 RLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNIL 97
          ++VYK +A+LYF +  +  +N+L +L++I     IL
Sbjct: 61 KVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEIL 91

[Close]

BLAST of Cmc12g0324481 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 24/88 (27.27%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 2  IRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRNVYRVLCSRAENISNFVEAKSIFGSDSR 61
          IR ++++N +G+ + A++Y++  +E+++ L   + R   +R +   +FVE ++      +
Sbjct: 3  IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNY-----K 62

Query: 62 LVYKHFATLYFLLVFNSSENKLAMLDLI 90
          +VY+ +A+L+F++  +  EN+LA+L+ I
Sbjct: 63 IVYRRYASLFFMVGVDDDENELAILEFI 85

The following BLAST results are available for this feature:

BLAST of Cmc12g0324481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30832.1	2.2e-54	100.00	AP-3 complex subunit sigma-like [Cucumis melo var. makuwa]	[more]
XP_008464326.1	2.6e-47	100.00	PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]	[more]
XP_008452384.1	1.9e-37	92.22	PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ...	[more]
KAA0058373.1	1.9e-37	92.22	AP-3 complex subunit sigma [Cucumis melo var. makuwa] >TYK23419.1 AP-3 complex s...	[more]
XP_011655957.1	1.4e-35	87.78	AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subuni...	[more]

BLAST of Cmc12g0324481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	3.8e-33	73.33	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	3.8e-17	45.05	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	3.8e-17	45.05	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	3.8e-17	45.05	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	3.8e-17	45.05	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of Cmc12g0324481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4J0	1.1e-54	100.00	AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CL75	1.3e-47	100.00	AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=...	[more]
A0A0A0KRY4	5.5e-43	86.92	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_5G628680 PE=3 SV=1	[more]
A0A1S3BT37	9.1e-38	92.22	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A5A7UR76	9.1e-38	92.22	AP-3 complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cmc12g0324481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	2.7e-34	73.33	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.3e-07	28.13	associated protein 19	[more]
AT4G35410.2	1.3e-07	29.17	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	1.3e-07	29.17	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	4.8e-07	27.27	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..105 e-value: 4.5E-25 score: 86.2
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..99
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..98 e-value: 1.0E-20 score: 74.1
None	No IPR available	GENE3D	3.30.450.60		coord: 1..112 e-value: 5.7E-29 score: 102.9
None	No IPR available	PANTHER	PTHR11753:SF42	AP COMPLEX SUBUNIT SIGMA	coord: 1..99
IPR000804	Clathrin adaptor complex, small chain	PROSITE	PS00989	CLAT_ADAPTOR_S	coord: 62..72
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0324481.1	Cmc12g0324481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030117	membrane coat