Cmc12g0324131 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0324131
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr12: 13509551 .. 13510051 (-)
RNA-Seq Expression	Cmc12g0324131
Synteny	Cmc12g0324131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTTGTTGAGAGTTTGTTAACCTTGCATCATAATGTTGGTACTAGACGTGGTCAAACTAATGAATCATCAGCTTACTTGTGGCATAAACGTTTAGGTCACATATCCAAAGAAAGAATTAAAATATTGATAAAGAATGAAATTCTTCCAGATTTGGATTTTACTGACCTTGGAATTTGTGTGGATTGTATTAAAGAAAAACAAACAAAACATACAGTTAACAAAGAAGCCACAAGAAGCTCACAGCTTCTTGAAATTATACACACTGATATTTGTGGACCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCACCTTTATGGATGATTTCTCACGTCATGGTTATATCTATTTATTGCATGAAAAATCTCAAGCAATAGATGCCTTAAAGGTATTTATAAATGAAGTTGAAAGGAAATTAGATAGAAATGTGAAAATCTTAAGATCTGATAGAGGTGGTGAGTATTATGGAAAATATAACGAGAATTGA

mRNA sequence

ATGTTTTTTGTTGAGAGTTTGTTAACCTTGCATCATAATGTTGGTACTAGACGTGGTCAAACTAATGAATCATCAGCTTACTTGTGGCATAAACGTTTAGGTCACATATCCAAAGAAAGAATTAAAATATTGATAAAGAATGAAATTCTTCCAGATTTGGATTTTACTGACCTTGGAATTTGTGTGGATTGTATTAAAGAAAAACAAACAAAACATACAGTTAACAAAGAAGCCACAAGAAGCTCACAGCTTCTTGAAATTATACACACTGATATTTGTGGACCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCACCTTTATGGATGATTTCTCACGTCATGGTTATATCTATTTATTGCATGAAAAATCTCAAGCAATAGATGCCTTAAAGGTATTTATAAATGAAGTTGAAAGGAAATTAGATAGAAATGTGAAAATCTTAAGATCTGATAGAGGTGGTGAGTATTATGGAAAATATAACGAGAATTGA

Coding sequence (CDS)

ATGTTTTTTGTTGAGAGTTTGTTAACCTTGCATCATAATGTTGGTACTAGACGTGGTCAAACTAATGAATCATCAGCTTACTTGTGGCATAAACGTTTAGGTCACATATCCAAAGAAAGAATTAAAATATTGATAAAGAATGAAATTCTTCCAGATTTGGATTTTACTGACCTTGGAATTTGTGTGGATTGTATTAAAGAAAAACAAACAAAACATACAGTTAACAAAGAAGCCACAAGAAGCTCACAGCTTCTTGAAATTATACACACTGATATTTGTGGACCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCACCTTTATGGATGATTTCTCACGTCATGGTTATATCTATTTATTGCATGAAAAATCTCAAGCAATAGATGCCTTAAAGGTATTTATAAATGAAGTTGAAAGGAAATTAGATAGAAATGTGAAAATCTTAAGATCTGATAGAGGTGGTGAGTATTATGGAAAATATAACGAGAATTGA

Protein sequence

MFFVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICVDCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNEN

Homology

[Close]

BLAST of Cmc12g0324131 vs. NCBI nr
Match: RYE18822.1 (hypothetical protein EOP45_13565, partial [Sphingobacteriaceae bacterium])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 130/165 (78.79%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 2   FFVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGIC 61
           FF E+LLT+HHNVGT+RG +NESSAYLWHKRLGHISKERI+ L+KN+ILP+LDFTDLG+C
Sbjct: 308 FFAETLLTVHHNVGTKRGLSNESSAYLWHKRLGHISKERIERLVKNDILPNLDFTDLGVC 367

Query: 62  VDCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIY 121
           V+CIK K T+ T+ K ATRSSQLLEIIHTDICGPFDVPS GGE+YFITF+DDFSR+GY+Y
Sbjct: 368 VECIKGKHTRQTLKKAATRSSQLLEIIHTDICGPFDVPSLGGERYFITFIDDFSRYGYVY 427

Query: 122 LLHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNEN 167
           LLHEKSQ++D L+VF+NEVER+LDR VKI+RSDRGGEYYG+Y+EN
Sbjct: 428 LLHEKSQSVDTLEVFVNEVERQLDRKVKIVRSDRGGEYYGRYDEN 472

[Close]

BLAST of Cmc12g0324131 vs. NCBI nr
Match: RZC12927.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A [Glycine soja] >RZC12928.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform B [Glycine soja])

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 126/163 (77.30%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           +VE++LTLHHNVGT+R   NE SA+LWHKRLGHIS+ERI+ LIKNEILPDLDFTDL ICV
Sbjct: 489 YVETVLTLHHNVGTKRSLVNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICV 548

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG E+YFITF+DD+SR+GY+YL
Sbjct: 549 DCIKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYL 608

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LHEKSQA++AL++++NEVER+LDR VKI+RSDRGGEYYG+Y+E
Sbjct: 609 LHEKSQAVNALEIYLNEVERQLDRKVKIIRSDRGGEYYGRYDE 650

[Close]

BLAST of Cmc12g0324131 vs. NCBI nr
Match: KYP36562.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 123/161 (76.40%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 5   ESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICVDC 64
           E+LLTLHHN+GT+R   NE SA+LWH+RLGHIS+ER++ LIKNEILP+LDFTDL ICVDC
Sbjct: 343 ETLLTLHHNIGTKRSLVNERSAFLWHRRLGHISRERMERLIKNEILPNLDFTDLNICVDC 402

Query: 65  IKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLH 124
           IK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG EKYFITF+DD+SR+GY+YLLH
Sbjct: 403 IKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVNSFGKEKYFITFIDDYSRYGYVYLLH 462

Query: 125 EKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           EKSQA+DAL++++NEVER+LD+ VK++RSDRGGEYYG+YNE
Sbjct: 463 EKSQAVDALEIYLNEVERQLDKKVKVVRSDRGGEYYGRYNE 502

[Close]

BLAST of Cmc12g0324131 vs. NCBI nr
Match: RZC25410.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 267.7 bits (683), Expect = 6.7e-68
Identity = 125/163 (76.69%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           +VE++LTLHHNVGT+R   NE SA+LWHKRLGHIS ERI+ LIKNEILPDLDFTDL ICV
Sbjct: 478 YVETVLTLHHNVGTKRSLVNERSAFLWHKRLGHISGERIERLIKNEILPDLDFTDLNICV 537

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG E+YFITF+DD+SR+GY+YL
Sbjct: 538 DCIKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYL 597

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LHEKSQA++AL++++NEVER+LDR VKI+RSDRGGEYY +Y+E
Sbjct: 598 LHEKSQAVNALEIYLNEVERQLDRKVKIIRSDRGGEYYRRYDE 639

[Close]

BLAST of Cmc12g0324131 vs. NCBI nr
Match: KYP65984.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 267.3 bits (682), Expect = 8.8e-68
Identity = 124/163 (76.07%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           F E+LLTLHHN+GT+RG  NE  AYLWHKRLGH+SKER++ L+KNEILPDLDFTDL +CV
Sbjct: 105 FAETLLTLHHNIGTKRGLENERFAYLWHKRLGHVSKERLQRLVKNEILPDLDFTDLNVCV 164

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEIIHTDICGPFDV SF  EKYFITF+DD+SR+GY+YL
Sbjct: 165 DCIKGKQTKHT-KKGATRSTQLLEIIHTDICGPFDVNSFNKEKYFITFIDDYSRYGYVYL 224

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LH+KSQAI+AL+++I EVER+LD  VKI+RSDRGGEYYG+Y+E
Sbjct: 225 LHDKSQAINALEIYIEEVERQLDSKVKIIRSDRGGEYYGRYDE 266

[Close]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 15  GTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICVDCIKEKQTKHTV 74
           G      +E S  LWHKR+GH+S++ ++IL K  ++     T +  C  C+  KQ + + 
Sbjct: 411 GELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSF 470

Query: 75  NKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQAIDALK 134
              + R   +L+++++D+CGP ++ S GG KYF+TF+DD SR  ++Y+L  K Q     +
Sbjct: 471 QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQ 530

Query: 135 VFINEVERKLDRNVKILRSDRGGEY 160
            F   VER+  R +K LRSD GGEY
Sbjct: 531 KFHALVERETGRKLKRLRSDNGGEY 555

[Close]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.9e-14
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 29  WHKRLGHISKERIKILIKNEILPDLDFT-DLGICVDCIKEKQTKHTVNKEATRSSQLLEI 88
           WH RLGH S   +  +I N  LP L+ +  L  C DC   K  K   +     SS+ LE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 89  IHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQAIDALKVFINEVERKLDRN 148
           I++D+     + S    +Y++ F+D F+R+ ++Y L +KSQ  D   +F + VE +    
Sbjct: 506 IYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 149 VKILRSDRGGEY 160
           +  L SD GGE+
Sbjct: 566 IGTLYSDNGGEF 576

[Close]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12
Identity = 41/139 (29.50%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 28  LWHKRLGHISKERIKILIKNEILPD---LDFTDLG--ICVDCIKEKQTKHTVN--KEATR 87
           LWH+R GHIS  ++  + +  +  D   L+  +L   IC  C+  KQ +      K+ T 
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 88  SSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQAIDALKVFINEV 147
             + L ++H+D+CGP    +   + YF+ F+D F+ +   YL+  KS      + F+ + 
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKS 536

Query: 148 ERKLDRNVKILRSDRGGEY 160
           E   +  V  L  D G EY
Sbjct: 537 EAHFNLKVVYLYIDNGREY 555

[Close]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 29  WHKRLGHISKERIKILIKNEILPDLDFTDLGI-CVDCIKEKQTKHTVNKEATRSSQLLEI 88
           WH RLGH +   +  +I N  L  L+ +   + C DC+  K  K   ++    S++ LE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 89  IHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQAIDALKVFINEVERKLDRN 148
           I++D+     + S    +Y++ F+D F+R+ ++Y L +KSQ  +    F N +E +    
Sbjct: 527 IYSDVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 149 VKILRSDRGGEY 160
           +    SD GGE+
Sbjct: 587 IGTFYSDNGGEF 597

[Close]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-09
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 0


Query: 28  LWHKRLGHISKERI-KILIKNEIL----PDLDFTDLGI--CVDCIKEKQTKHTVNK---- 87
           L H+ LGH +   I K L KN +      D+++++     C DC+  K TKH   K    
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRL 652

Query: 88  EATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLHEKSQ--AIDALK 147
           +   S +  + +HTDI GP          YFI+F D+ +R  ++Y LH++ +   ++   
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFT 712

Query: 148 VFINEVERKLDRNVKILRSDRGGEYYGK 163
             +  ++ + +  V +++ DRG EY  K
Sbjct: 713 SILAFIKNQFNARVLVIQMDRGSEYTNK 740

[Close]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL
Match: A0A4Q3EHL3 (Uncharacterized protein (Fragment) OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_13565 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.2e-74
Identity = 130/165 (78.79%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 2   FFVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGIC 61
           FF E+LLT+HHNVGT+RG +NESSAYLWHKRLGHISKERI+ L+KN+ILP+LDFTDLG+C
Sbjct: 308 FFAETLLTVHHNVGTKRGLSNESSAYLWHKRLGHISKERIERLVKNDILPNLDFTDLGVC 367

Query: 62  VDCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIY 121
           V+CIK K T+ T+ K ATRSSQLLEIIHTDICGPFDVPS GGE+YFITF+DDFSR+GY+Y
Sbjct: 368 VECIKGKHTRQTLKKAATRSSQLLEIIHTDICGPFDVPSLGGERYFITFIDDFSRYGYVY 427

Query: 122 LLHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNEN 167
           LLHEKSQ++D L+VF+NEVER+LDR VKI+RSDRGGEYYG+Y+EN
Sbjct: 428 LLHEKSQSVDTLEVFVNEVERQLDRKVKIVRSDRGGEYYGRYDEN 472

[Close]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL
Match: A0A445KPR8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A OS=Glycine soja OX=3848 GN=D0Y65_012596 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 126/163 (77.30%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           +VE++LTLHHNVGT+R   NE SA+LWHKRLGHIS+ERI+ LIKNEILPDLDFTDL ICV
Sbjct: 489 YVETVLTLHHNVGTKRSLVNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICV 548

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG E+YFITF+DD+SR+GY+YL
Sbjct: 549 DCIKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYL 608

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LHEKSQA++AL++++NEVER+LDR VKI+RSDRGGEYYG+Y+E
Sbjct: 609 LHEKSQAVNALEIYLNEVERQLDRKVKIIRSDRGGEYYGRYDE 650

[Close]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL
Match: A0A151R237 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_042301 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.5e-68
Identity = 123/161 (76.40%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 5   ESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICVDC 64
           E+LLTLHHN+GT+R   NE SA+LWH+RLGHIS+ER++ LIKNEILP+LDFTDL ICVDC
Sbjct: 343 ETLLTLHHNIGTKRSLVNERSAFLWHRRLGHISRERMERLIKNEILPNLDFTDLNICVDC 402

Query: 65  IKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYLLH 124
           IK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG EKYFITF+DD+SR+GY+YLLH
Sbjct: 403 IKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVNSFGKEKYFITFIDDYSRYGYVYLLH 462

Query: 125 EKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           EKSQA+DAL++++NEVER+LD+ VK++RSDRGGEYYG+YNE
Sbjct: 463 EKSQAVDALEIYLNEVERQLDKKVKVVRSDRGGEYYGRYNE 502

[Close]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL
Match: A0A445LQ30 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3848 GN=D0Y65_004205 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.2e-68
Identity = 125/163 (76.69%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           +VE++LTLHHNVGT+R   NE SA+LWHKRLGHIS ERI+ LIKNEILPDLDFTDL ICV
Sbjct: 478 YVETVLTLHHNVGTKRSLVNERSAFLWHKRLGHISGERIERLIKNEILPDLDFTDLNICV 537

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEI+HTDICGPFDV SFG E+YFITF+DD+SR+GY+YL
Sbjct: 538 DCIKGKQTKHT-KKGATRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYL 597

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LHEKSQA++AL++++NEVER+LDR VKI+RSDRGGEYY +Y+E
Sbjct: 598 LHEKSQAVNALEIYLNEVERQLDRKVKIIRSDRGGEYYRRYDE 639

[Close]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL
Match: A0A151TG02 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_012262 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.2e-68
Identity = 124/163 (76.07%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 3   FVESLLTLHHNVGTRRGQTNESSAYLWHKRLGHISKERIKILIKNEILPDLDFTDLGICV 62
           F E+LLTLHHN+GT+RG  NE  AYLWHKRLGH+SKER++ L+KNEILPDLDFTDL +CV
Sbjct: 105 FAETLLTLHHNIGTKRGLENERFAYLWHKRLGHVSKERLQRLVKNEILPDLDFTDLNVCV 164

Query: 63  DCIKEKQTKHTVNKEATRSSQLLEIIHTDICGPFDVPSFGGEKYFITFMDDFSRHGYIYL 122
           DCIK KQTKHT  K ATRS+QLLEIIHTDICGPFDV SF  EKYFITF+DD+SR+GY+YL
Sbjct: 165 DCIKGKQTKHT-KKGATRSTQLLEIIHTDICGPFDVNSFNKEKYFITFIDDYSRYGYVYL 224

Query: 123 LHEKSQAIDALKVFINEVERKLDRNVKILRSDRGGEYYGKYNE 166
           LH+KSQAI+AL+++I EVER+LD  VKI+RSDRGGEYYG+Y+E
Sbjct: 225 LHDKSQAINALEIYIEEVERQLDSKVKIIRSDRGGEYYGRYDE 266

The following BLAST results are available for this feature:

BLAST of Cmc12g0324131 vs. NCBI nr


Match Name	E-value	Identity	Description
RYE18822.1	1.1e-73	78.79	hypothetical protein EOP45_13565, partial [Sphingobacteriaceae bacterium]	[more]
RZC12927.1	2.7e-69	77.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A [Glycine s...	[more]
KYP36562.1	3.0e-68	76.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RZC25410.1	6.7e-68	76.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]	[more]
KYP65984.1	8.8e-68	76.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

BLAST of Cmc12g0324131 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-25	37.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	9.9e-14	34.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.2e-12	29.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.1e-11	29.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	9.6e-09	28.38	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3EHL3	5.2e-74	78.79	Uncharacterized protein (Fragment) OS=Sphingobacteriaceae bacterium OX=2021370 G...	[more]
A0A445KPR8	1.3e-69	77.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A OS=Glycine...	[more]
A0A151R237	1.5e-68	76.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A445LQ30	3.2e-68	76.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3...	[more]
A0A151TG02	4.2e-68	76.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of Cmc12g0324131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 20..69 e-value: 1.3E-14 score: 53.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 74..166 e-value: 1.6E-13 score: 52.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 85..160 e-value: 3.6E-9 score: 36.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 80..166 score: 8.873685
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 28..159
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 28..159
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 80..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0324131.1	Cmc12g0324131.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding