Cmc12g0323201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0323201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr12: 11829474 .. 11830168 (+)
RNA-Seq Expression	Cmc12g0323201
Synteny	Cmc12g0323201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGTGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATATGGTTCTAAGGATTTGATTCTTATAGGATACACAGACTCTGACTTTCAGGCTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTGCCAAAAAGGATGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAAGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAATGCATCGAGGGGATGTGATCGTCACACAGATAACTTCAACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCATGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTATGTGACATGCCACATTTAATCTAG

mRNA sequence

ATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGTGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATATGGCTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTGCCAAAAAGGATGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAAGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAATGCATCGAGGGGATGTGATCGTCACACAGATAACTTCAACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCATGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTATGTGACATGCCACATTTAATCTAG

Coding sequence (CDS)

ATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGTGGTAGGGATAGTCAGTAGATATCAATCTAATCCAGGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATATGGCTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTGCCAAAAAGGATGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAAGGAGCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACTTGATTCGAGAGATAATGCATCGAGGGGATGTGATCGTCACACAGATAACTTCAACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCATGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTATGTGACATGCCACATTTAATCTAG

Protein sequence

MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLVYMADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYVAACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHLI

Homology

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BLAST of Cmc12g0323201 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 404.1 bits (1037), Expect = 7.8e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
           MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
           LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEA+YV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
           IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 460 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]

BLAST of Cmc12g0323201 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 899  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 958

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]

BLAST of Cmc12g0323201 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 1113 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1172

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1293 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

[Close]

BLAST of Cmc12g0323201 vs. NCBI nr
Match: TYK19524.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
           MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 72  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 131

Query: 61  LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
           LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 132 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 192 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 251

Query: 181 IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
           IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 252 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 300

[Close]

BLAST of Cmc12g0323201 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.3e-44
Identity = 97/223 (43.50%), Postives = 135/223 (60.54%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            M  +PY+SAVGSLMYAM+CTRPDI + VG+VSR+  NPG  HW AVK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            L +                 D D+RKS++G +FT +GGA+ W+S  Q C+A ST EA+Y+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AA E  K+ +WL++FL +L +     K   +YCD+  A+  SK    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGL 209
            IRE++    + V +I++  N AD  TK +    FE   E +G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-31
Identity = 79/223 (35.43%), Postives = 118/223 (52.91%), Query Frame = 0


Query: 5    PYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLVY- 64
            P  S +G LMY MLCTRPD+   V I+SRY S      W  +K +L+YL+ T D  L++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 65   -----------MADRD------SRKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAKYV 124
                         D D       RKST+G +F + +   + W + +Q  +A S+ EA+Y+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 125  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 184
            A  EA ++ +WL+  L  + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH 
Sbjct: 1300 ALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1359

Query: 185  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGL 209
             RE +    + +  I + + +AD FTKPL A  F    + LGL
Sbjct: 1360 AREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.5e-25
Identity = 70/223 (31.39%), Postives = 104/223 (46.64%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLV--- 65
            Y   VGSL Y +  TRPD+ Y V  +S+Y   P   HW A+K +L+YL  T D+ +    
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   -------------YMADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYVAACE 125
                         +  D D   ST+G +  L    + W S KQ  +  S+ EA+Y +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREI 185
             + +  W+   L +L +   +S P  +YCDN GA      P  H R KHI   YH IR  
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1407

Query: 186  MHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMP 213
            +  G + V  +++   +AD  TKPL    F+     +G+  +P
Sbjct: 1408 VQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

[Close]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
           M+++PY SAVG++MY M+ TRPD+   VG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVY----------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKY 118
           L +                  D +SR+STSG +F LNGG V WRS KQ  +A S+ E +Y
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

[Close]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 68/223 (30.49%), Postives = 105/223 (47.09%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLV--- 65
            Y   VGSL Y +  TRPDI Y V  +S++   P   H  A+K IL+YL  T ++ +    
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   -------------YMADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYVAACE 125
                         +  D+D   ST+G +  L    + W S KQ  +  S+ EA+Y +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREI 185
             + +  W+   L +L +   +++P  +YCDN GA      P  H R KHI   YH IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 186  MHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMP 213
            +  G + V  +++   +AD  TKPL    F+     +G+  +P
Sbjct: 1425 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVP 1464

[Close]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.8e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
           MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
           LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEA+YV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
           AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
           IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 460 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.4e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.4e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.4e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 899  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 958

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL
Match: A0A5A7TZD7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001300 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.4e-109
Identity = 201/229 (87.77%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1    MRHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 60
            MRHIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPGLAHWTAVKTILKYLRRTRDY 
Sbjct: 1113 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1172

Query: 61   LVY---------------MADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYV 120
            LVY                 DRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEA+YV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 121  AACEAAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 180
            AACEAAK+ VWLR FLIDLEVVPNMSKPITLYCDNSGAVANS+EPRSHKRGKHIERKYHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 181  IREIMHRGDVIVTQITSTHNVADPFTKPLMAKVFEGHLESLGLCDMPHL 215
            IREI+HRGDVIVTQI STHNVADPFTKPL AKVFEGHLESLGL DMPHL
Sbjct: 1293 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

[Close]

BLAST of Cmc12g0323201 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-20
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 0


Query: 6   YASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYMLVYMA 65
           Y   +G LMY  + TR DI + V  +S++   P LAH  AV  IL Y++ T    L Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  D----------------RDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYVAACE 125
                            +D+R+ST+G    L    + W+S KQ  ++ S+ EA+Y A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AAKKDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 169
           A  + +WL +F  +L++   +SKP  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc12g0323201 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-07
Identity = 39/127 (30.71%), Postives = 60/127 (47.24%), Query Frame = 0


Query: 6   YASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGLAHWTAVKTILKYLRRT--------R 65
           + S VG+L Y  L TRPDI Y V IV +    P LA +  +K +L+Y++ T        +
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  DYMLVYMADRDS--------RKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAKYVAACE 117
           +  L   A  DS        R+ST+G    L    + W + +Q  ++ S+ E +Y A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

The following BLAST results are available for this feature:

BLAST of Cmc12g0323201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046416.1	7.8e-109	87.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	1.3e-108	87.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.3e-108	87.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK19524.1	1.3e-108	87.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	1.3e-108	87.77	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc12g0323201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.3e-44	43.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-31	35.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.5e-25	31.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	6.1e-24	42.86	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q94HW2	2.3e-23	30.49	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc12g0323201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWI0	3.8e-109	87.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	6.4e-109	87.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.4e-109	87.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5D3BHG7	6.4e-109	87.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]
A0A5A7TZD7	6.4e-109	87.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G0013...	[more]

BLAST of Cmc12g0323201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.2e-20	33.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.0e-07	30.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 83..199
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 83..199
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 63..194 e-value: 1.57993E-58 score: 179.201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0323201.1	Cmc12g0323201.1	mRNA