Cmc12g0323001 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0323001
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr12: 11533906 .. 11534697 (+)
RNA-Seq ExpressionCmc12g0323001
SyntenyCmc12g0323001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAATCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTAACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTATGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTTAAGGAGTTCCTAGACACTTTTATGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGTTGAAGCAGGTGTTCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGTAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCATCAGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

mRNA sequence

ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAATCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTAACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTATGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTTAAGGAGTTCCTAGACACTTTTATGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGTTGAAGCAGGTGTTCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGTAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCATCAGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

Coding sequence (CDS)

ATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAATCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTAACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTATGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGACTTGATGAACAGAGTGTTTAAGGAGTTCCTAGACACTTTTATGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGTTGAAGCAGGTGTTCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGTAGTCACCAGTTGGCCCCGACCTTCCACAGTTAGTGAGGTTCGTAGCTTTTTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCATCAGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

Protein sequence

MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTVPDGSGSFVIYSDASKKGLGCVLM
Homology
BLAST of Cmc12g0323001 vs. NCBI nr
Match: KAA0047044.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138
Identity = 249/263 (94.68%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 241 PDGSGSFVIYSDASKKGLGCVLM 263

BLAST of Cmc12g0323001 vs. NCBI nr
Match: KAA0062124.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 502.7 bits (1293), Expect = 2.0e-138
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1    MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVFFKIDLRSGYHQLRIKDGDVPKTA
Sbjct: 820  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 879

Query: 61   FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFI+MSFGLTNAP VFMD MNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 880  FRSRYGHYEFIVMSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 939

Query: 121  LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
            LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 940  LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTDWTRPSTVSE 999

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1000 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1059

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 264
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1060 PDGSGSFVIYSDASKKGLGCVLM 1082

BLAST of Cmc12g0323001 vs. NCBI nr
Match: KAA0033251.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 502.3 bits (1292), Expect = 2.6e-138
Identity = 248/263 (94.30%), Postives = 254/263 (96.58%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAPTVFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 627

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 628 PDGSGSFVIYSDASKKGLGCVLM 650

BLAST of Cmc12g0323001 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLM 453

BLAST of Cmc12g0323001 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1    MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
            LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 264
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCVLM 1367

BLAST of Cmc12g0323001 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-53
Identity = 99/262 (37.79%), Postives = 159/262 (60.69%), Query Frame = 0

Query: 2   RLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTAF 61
           R+ IDYR+LN++ + +RYP+P +D++  +L     F  IDL  G+HQ+ + +  + KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEHL 121
            ++ GHYE++ M FGL NAP  F   MN + +  L+   +V++DDI+I+S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSEV 181
           ++V   L D  L  +  K EF  K+  FLGH+V+  G+  +P K++ + S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTASVLTV 241
           R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++   +L +
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQL 501

Query: 242 PDGSGSFVIYSDASKKGLGCVL 263
           PD    FV+ +DAS   LG VL
Sbjct: 502 PDFEKKFVLTTDASNLALGAVL 523

BLAST of Cmc12g0323001 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-51
Identity = 100/262 (38.17%), Postives = 158/262 (60.31%), Query Frame = 0

Query: 2   RLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTAF 61
           R+ IDYR+LN++ V +R+P+P +D++  +L     F  IDL  G+HQ+ +    V KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEHL 121
            +++GHYE++ M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSEV 181
            +V + L    L  +  K EF  ++  FLGHV++  G+  +P KIE +  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTASVLTV 241
           ++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +    +L V
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKV 502

Query: 242 PDGSGSFVIYSDASKKGLGCVL 263
           PD +  F + +DAS   LG VL
Sbjct: 503 PDFTKKFTLTTDASDVALGAVL 524

BLAST of Cmc12g0323001 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-49
Identity = 95/272 (34.93%), Postives = 157/272 (57.72%), Query Frame = 0

Query: 2   RLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTAF 61
           R+ +D++ LN V + + YP+P I+     L  A  F  +DL SG+HQ+ +K+ D+PKTAF
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  RSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEHL 121
            +  G YEF+ + FGL NAP +F  +++ + +E +     V+IDDI+++S+    H ++L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 RMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSEV 181
           R+VL +L    L     K  F   QV FLG++V+  G+  DP K+  ++  P P++V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQ 241
           + FLG+  YYR+F+++++++A PLT LTR              P    +    SF +LK 
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKS 418

Query: 242 KLVTASVLTVPDGSGSFVIYSDASKKGLGCVL 263
            L ++ +L  P  +  F + +DAS   +G VL
Sbjct: 419 ILCSSEILAFPCFTKPFHLTTDASNWAIGAVL 450

BLAST of Cmc12g0323001 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-49
Identity = 97/262 (37.02%), Postives = 158/262 (60.31%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           +R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F K+DL+S YH +R++ GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FR   G +E+++M +G++ AP  F   +N +  E  ++ ++ ++DDILI+SK+E EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           ++ VLQ L++  L    +K EF   QV F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           +R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+  VL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGSFVIYSDASKKGLGCVL 263
            D S   ++ +DAS   +G VL
Sbjct: 702 FDFSKKILLETDASDVAVGAVL 723

BLAST of Cmc12g0323001 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-49
Identity = 97/262 (37.02%), Postives = 158/262 (60.31%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           +R+ +DY+ LNK +  N YPLP I+ L  ++QG+T+F K+DL+S YH +R++ GD  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FR   G +E+++M +G++ AP  F   +N +  E  ++ ++ ++DDILI+SK+E EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           ++ VLQ L++  L    +K EF   QV F+G+ +S+ G +     I+ V  W +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           +R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+  VL  
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRH 701

Query: 241 PDGSGSFVIYSDASKKGLGCVL 263
            D S   ++ +DAS   +G VL
Sbjct: 702 FDFSKKILLETDASDVAVGAVL 723

BLAST of Cmc12g0323001 vs. ExPASy TrEMBL
Match: A0A5A7TVQ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.6e-139
Identity = 249/263 (94.68%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 241 PDGSGSFVIYSDASKKGLGCVLM 263

BLAST of Cmc12g0323001 vs. ExPASy TrEMBL
Match: A0A5A7V492 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004830 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 9.5e-139
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1    MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVFFKIDLRSGYHQLRIKDGDVPKTA
Sbjct: 820  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 879

Query: 61   FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFI+MSFGLTNAP VFMD MNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 880  FRSRYGHYEFIVMSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 939

Query: 121  LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
            LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 940  LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTDWTRPSTVSE 999

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1000 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1059

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 264
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1060 PDGSGSFVIYSDASKKGLGCVLM 1082

BLAST of Cmc12g0323001 vs. ExPASy TrEMBL
Match: A0A5A7SUW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00470 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 248/263 (94.30%), Postives = 254/263 (96.58%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAPTVFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EH+EH
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 627

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 628 PDGSGSFVIYSDASKKGLGCVLM 650

BLAST of Cmc12g0323001 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1   MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
           FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
           LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 264
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLM 453

BLAST of Cmc12g0323001 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 248/263 (94.30%), Postives = 253/263 (96.20%), Query Frame = 0

Query: 1    MRLCIDYRELNKVIVKNRYPLPRIDDLFNQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKV VKNRYPLPRIDDLF+QLQGATVF KIDLRSGYHQLRIKDGDVPKTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIMMSFGLTNAPTVFMDLMNRVFKEFLDTFMIVFIDDILIYSKTEVEHEEH 120
            FRSRYGHYEFI+MSFGLTNAP VFMDLMNRVF+EFLDTF+IVFIDDILIYSKTE EHEEH
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LRMVLQTLRDNKLYAKFSKFEFWLKQVFFLGHVVSKAGVSVDPAKIEVVTSWPRPSTVSE 180
            LR+VLQTLRDNKLYAKFSK EFWLKQV FLGHVVSKAGVSVDPAKIE VT W RPSTVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 264
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCVLM 1367

BLAST of Cmc12g0323001 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-25
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 0

Query: 120 HLRMVLQTLRDNKLYAKFSKFEFWLKQVFFLG--HVVSKAGVSVDPAKIEVVTSWPRPST 179
           HL MVLQ    ++ YA   K  F   Q+ +LG  H++S  GVS DPAK+E +  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTASV 239
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W++    +F+ LK  + T  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 240 LTVPDGSGSFV 249
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047044.11.1e-13894.68pol protein [Cucumis melo var. makuwa][more]
KAA0062124.12.0e-13894.30gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0033251.12.6e-13894.30pol protein [Cucumis melo var. makuwa][more]
KAA0026271.13.3e-13894.30pol protein [Cucumis melo var. makuwa][more]
KAA0047433.13.3e-13894.30ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208251.2e-5337.79Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043231.1e-5138.17Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P93.0e-4934.93Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P0CT413.0e-4937.02Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT343.0e-4937.02Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7TVQ25.6e-13994.68Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE... [more]
A0A5A7V4929.5e-13994.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89... [more]
A0A5A7SUW21.2e-13894.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7SPZ21.6e-13894.30Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE... [more]
A0A5A7TV571.6e-13894.30Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
ATMG00860.16.9e-2543.51DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 19..154
e-value: 1.5E-63
score: 215.9
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 164..254
e-value: 4.6E-31
score: 108.7
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..153
e-value: 1.9E-24
score: 86.4
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..154
score: 10.700028
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 217..263
e-value: 1.5E-11
score: 44.1
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..79
e-value: 1.5E-63
score: 215.9
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..262
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 2..262
NoneNo IPR availableCDDcd01647RT_LTRcoord: 2..154
e-value: 2.51637E-74
score: 222.471
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..263

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0323001.1Cmc12g0323001.1mRNA