Cmc12g0322891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0322891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 11331977 .. 11333094 (-)
RNA-Seq Expression	Cmc12g0322891
Synteny	Cmc12g0322891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATTAGAACCAGTGGTGAGGGACTATTCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTTGAGCCGGGCACGGTTCCTATATCCAGAGCCTCATACAGAATGGCCCCAGCAGAGTTGAAAGAACTGAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTATGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAATGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAAAATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTTCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTAATGACATCTTGATATATTCCAAGAAGGAGGCCGAGCATGAGGGGCATTTCGTATGGTTTTGCAAACAATTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTGTTGGCTAAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTAAATCCAGCTAAGATAGAAGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTGAGGTTTGTAGCTTCCTGGGCTTAGCAGGTTATTATCGATGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAAGCATGTGAGGACAGTTTCCAGAACCTTAAACCGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTTAG

mRNA sequence

ATGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATTAGAACCAGTGGTGAGGGACTATTCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTTGAGCCGGGCACGGTTCCTATATCCAGAGCCTCATACAGAATGGCCCCAGCAGAGTTGAAAGAACTGAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTATGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAATGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAAAATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTTCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTAATGACATCTTGATATATTCCAAGAAGGAGGCCGAGCATGAGGGGCATTTCGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTAAATCCAGCTAAGATAGAAGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTGAGGTTTGTAGCTTCCTGGGCTTAGCAGGTTATTATCGATGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAAGCATGTGAGGACAGTTTCCAGAACCTTAAACCGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTTAG

Coding sequence (CDS)

ATGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATTAGAACCAGTGGTGAGGGACTATTCAGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCTCACAGAGAGGTTGAGTTTGCCATAGAGTTTGAGCCGGGCACGGTTCCTATATCCAGAGCCTCATACAGAATGGCCCCAGCAGAGTTGAAAGAACTGAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTATGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAATGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAAAATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTTCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTAATGACATCTTGATATATTCCAAGAAGGAGGCCGAGCATGAGGGGCATTTCGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTAAATCCAGCTAAGATAGAAGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTGAGGTTTGTAGCTTCCTGGGCTTAGCAGGTTATTATCGATGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAAGCATGTGAGGACAGTTTCCAGAACCTTAAACCGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTTAG

Protein sequence

MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHFVSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASR

Homology

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BLAST of Cmc12g0322891 vs. NCBI nr
Match: KAA0032794.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 324/349 (92.84%), Postives = 330/349 (94.56%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDYSDVFPEELPGLPPHRE+EFAIE EPGTVPISRA YRMAPA
Sbjct: 670  VVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRMAPA 729

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 730  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 789

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAP 
Sbjct: 790  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPT 849

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGH--FVSFLGHVVSKARVSVNPAK 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H   VSFLGHVVSKA VSV+PAK
Sbjct: 850  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSKAGVSVDPAK 909

Query: 241  IEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 300
            IEAVTSW RPSTVSEV SFLGL GYYR FVENFSRIATPLTQLTRKGAPFVWSKACEDSF
Sbjct: 910  IEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 969

Query: 301  QNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASR 348
            QNLK KLVTAPV TVPDGSGSF+IY DASKKGLGCVLMQQGKVVAYASR
Sbjct: 970  QNLKKKLVTAPVPTVPDGSGSFMIYGDASKKGLGCVLMQQGKVVAYASR 1018

[Close]

BLAST of Cmc12g0322891 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 645.2 bits (1663), Expect = 3.2e-181
Identity = 329/372 (88.44%), Postives = 333/372 (89.52%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H                      
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEF 1246

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYR FVENFSRIA
Sbjct: 1247 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 1306

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLTQLTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 1307 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1366

[Close]

BLAST of Cmc12g0322891 vs. NCBI nr
Match: KAA0036204.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 644.0 bits (1660), Expect = 7.2e-181
Identity = 327/372 (87.90%), Postives = 331/372 (88.98%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 665  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 724

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSM LCIDYRELNKVTVKNRYPLP
Sbjct: 725  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNRYPLP 784

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 785  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTAFRSRYGHYEFIVMSFGLTNAPA 844

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFINDILIYSK EAEHE H                      
Sbjct: 845  VFMDLMNRVFREFLDTFVIVFINDILIYSKTEAEHEKHLRIVLQTLRDNKLYAKFSKCEF 904

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYRWFVENFSRIA
Sbjct: 905  WLKHVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRWFVENFSRIA 964

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLT+LTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 965  TPLTELTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1024

[Close]

BLAST of Cmc12g0322891 vs. NCBI nr
Match: KAA0051051.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 643.7 bits (1659), Expect = 9.4e-181
Identity = 328/372 (88.17%), Postives = 333/372 (89.52%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 651  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 710

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 711  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 770

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 771  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 830

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H                      
Sbjct: 831  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEF 890

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYR FVENFSRIA
Sbjct: 891  WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 950

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLTQLTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 951  TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1010

[Close]

BLAST of Cmc12g0322891 vs. NCBI nr
Match: KAA0060839.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 643.3 bits (1658), Expect = 1.2e-180
Identity = 321/347 (92.51%), Postives = 327/347 (94.24%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
           MVDTREV VSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 288 MVDTREVGVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 347

Query: 61  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVT+K RYPLP
Sbjct: 348 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKKRYPLP 407

Query: 121 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
           RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAP 
Sbjct: 408 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPV 467

Query: 181 VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHFVSFLGHVVSKARVSVNPAKIE 240
           VFMDLMNRVFREFLDTFVIVFI+DIL+YSK EAEHE H    L HVVSKA VSV+PAKIE
Sbjct: 468 VFMDLMNRVFREFLDTFVIVFIDDILLYSKTEAEHEEH----LRHVVSKAGVSVDPAKIE 527

Query: 241 AVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN 300
           AVTSWTRPSTVSEV SFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN
Sbjct: 528 AVTSWTRPSTVSEVRSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN 587

Query: 301 LKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASR 348
           LK KLVTAPVLT+PDGSGSFVIYSDASKKGLGCV MQQGKVVAYASR
Sbjct: 588 LKQKLVTAPVLTIPDGSGSFVIYSDASKKGLGCVSMQQGKVVAYASR 630

[Close]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 6.8e-57
Identity = 118/330 (35.76%), Postives = 183/330 (55.45%), Query Frame = 0


Query: 49  PISRASYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFV-KKNDGS----MRLCI 108
           PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK D S     R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 109 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRY 168
           DYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF  + 
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 169 GHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF---- 228
           GHYE++ M FGL NAPA F   MN + R  L+   +V+++DI+I+S    EH        
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 229 ---------------------VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFL 288
                                 +FLGH+V+   +  NP K++A+ S+  P+   E+ +FL
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445

Query: 289 GLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKPKLVTAPVLTVPDGS 348
           GL GYYR F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +PD  
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505

[Close]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.8e-56
Identity = 119/326 (36.50%), Postives = 182/326 (55.83%), Query Frame = 0


Query: 53  ASYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFV-KKNDGS----MRLCIDYRE 112
           + Y    A  +E++ Q+Q++L++G IR S SP+ +P+  V KK D S     R+ IDYR+
Sbjct: 211 SKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRK 270

Query: 113 LNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYE 172
           LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF  ++GHYE
Sbjct: 271 LNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYE 330

Query: 173 FIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF-------- 232
           ++ M FGL NAPA F   MN + R  L+   +V+++DI+++S    EH            
Sbjct: 331 YLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLA 390

Query: 233 -----------------VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAG 292
                             +FLGHV++   +  NP KIEA+  +  P+   E+ +FLGL G
Sbjct: 391 KANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTG 450

Query: 293 YYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKPKLVTAPVLTVPDGSGSFV 348
           YYR F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L VPD +  F 
Sbjct: 451 YYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFT 510

[Close]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 3.8e-52
Identity = 119/344 (34.59%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 20  YSDVFPEELPGLPP---HREVEFAIEFEPGTVPISRASYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  V+  IE +PG        Y +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 80  FIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS 139
           FI PS SP  +PV+ V K DG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF    G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 710 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 769

Query: 200 FVIVFINDILIYSKKEAEHEGHF-------------------------VSFLGHVVSKAR 259
           FV V+++DILI+S+   EH  H                            FLG+ +   +
Sbjct: 770 FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 829

Query: 260 VSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWS 319
           ++    K  A+  +  P TV +   FLG+  YYR F+ N S+IA P+       +   W+
Sbjct: 830 IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WT 889

Query: 320 KACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 336
           +  + + + LK  L  +PVL   +   ++ + +DASK G+G VL
Sbjct: 890 EKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVL 929

[Close]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 206.1 bits (523), Expect = 6.6e-52
Identity = 119/344 (34.59%), Postives = 178/344 (51.74%), Query Frame = 0


Query: 20  YSDVFPEELPGLPP---HREVEFAIEFEPGTVPISRASYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  V+  IE +PG        Y +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 80  FIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFS 139
           FI PS SP  +PV+ V K DG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF    G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 684 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 743

Query: 200 FVIVFINDILIYSKKEAEHEGHF-------------------------VSFLGHVVSKAR 259
           FV V+++DILI+S+   EH  H                            FLG+ +   +
Sbjct: 744 FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQK 803

Query: 260 VSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWS 319
           ++    K  A+  +  P TV +   FLG+  YYR F+ N S+IA P+       +   W+
Sbjct: 804 IAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WT 863

Query: 320 KACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 336
           +  + +   LK  L  +PVL   +   ++ + +DASK G+G VL
Sbjct: 864 EKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVL 903

[Close]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-51
Identity = 111/355 (31.27%), Postives = 188/355 (52.96%), Query Frame = 0


Query: 13  LEPVVRDYSDVF----PEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPAELKELKVQ 72
           L  + +++ D+      E+LP   P + +EF +E       +   +Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQ 132
           + + L  G IR S +    PV+FV K +G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPAVFMDLMNR 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFINDILIYSKKEAEHEGHF-------------------------VSFL 252
           +  E  ++ V+ +++DILI+SK E+EH  H                          V F+
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFI 613

Query: 253 GHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTR 312
           G+ +S+   +     I+ V  W +P    E+  FLG   Y R F+   S++  PL  L +
Sbjct: 614 GYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK 673

Query: 313 KGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQ 339
           K   + W+     + +N+K  LV+ PVL   D S   ++ +DAS   +G VL Q+
Sbjct: 674 KDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726

[Close]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL
Match: A0A5D3E456 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00150 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 9.2e-182
Identity = 324/349 (92.84%), Postives = 330/349 (94.56%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDYSDVFPEELPGLPPHRE+EFAIE EPGTVPISRA YRMAPA
Sbjct: 670  VVDTREVDVSLSSEPVVRDYSDVFPEELPGLPPHREIEFAIELEPGTVPISRAPYRMAPA 729

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 730  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 789

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAP 
Sbjct: 790  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPT 849

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGH--FVSFLGHVVSKARVSVNPAK 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H   VSFLGHVVSKA VSV+PAK
Sbjct: 850  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSKAGVSVDPAK 909

Query: 241  IEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 300
            IEAVTSW RPSTVSEV SFLGL GYYR FVENFSRIATPLTQLTRKGAPFVWSKACEDSF
Sbjct: 910  IEAVTSWPRPSTVSEVRSFLGLIGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSF 969

Query: 301  QNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASR 348
            QNLK KLVTAPV TVPDGSGSF+IY DASKKGLGCVLMQQGKVVAYASR
Sbjct: 970  QNLKKKLVTAPVPTVPDGSGSFMIYGDASKKGLGCVLMQQGKVVAYASR 1018

[Close]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.6e-181
Identity = 329/372 (88.44%), Postives = 333/372 (89.52%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H                      
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEF 1246

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYR FVENFSRIA
Sbjct: 1247 WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 1306

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLTQLTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 1307 TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1366

[Close]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL
Match: A0A5A7SY46 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00790 PE=4 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 3.5e-181
Identity = 327/372 (87.90%), Postives = 331/372 (88.98%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 665  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 724

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSM LCIDYRELNKVTVKNRYPLP
Sbjct: 725  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMHLCIDYRELNKVTVKNRYPLP 784

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDV KTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 785  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVLKTAFRSRYGHYEFIVMSFGLTNAPA 844

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFINDILIYSK EAEHE H                      
Sbjct: 845  VFMDLMNRVFREFLDTFVIVFINDILIYSKTEAEHEKHLRIVLQTLRDNKLYAKFSKCEF 904

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYRWFVENFSRIA
Sbjct: 905  WLKHVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRWFVENFSRIA 964

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLT+LTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 965  TPLTELTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1024

[Close]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 4.5e-181
Identity = 328/372 (88.17%), Postives = 333/372 (89.52%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
            +VDTREVDVSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 651  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 710

Query: 61   ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 711  ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 770

Query: 121  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
            RIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFR RYGHYEFIVMSFGLTNAPA
Sbjct: 771  RIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 830

Query: 181  VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHF--------------------- 240
            VFMDLMNRVFREFLDTFVIVFI+DILIYSK EAEHE H                      
Sbjct: 831  VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEF 890

Query: 241  ----VSFLGHVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIA 300
                VSFLGHVVSKA VSV+PAKIEAVT WTRPSTVSEV SFLGLAGYYR FVENFSRIA
Sbjct: 891  WLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIA 950

Query: 301  TPLTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 348
            TPLTQLTRKGAPFVWSKACEDSFQNLK KLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL
Sbjct: 951  TPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVL 1010

[Close]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL
Match: A0A5A7V556 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00700 PE=4 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 5.9e-181
Identity = 321/347 (92.51%), Postives = 327/347 (94.24%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYSDVFPEELPGLPPHREVEFAIEFEPGTVPISRASYRMAPA 60
           MVDTREV VSLS EPVVRDY DVFPEELPGLPPHREVEFAIE EPGTVPISRA YRMAPA
Sbjct: 288 MVDTREVGVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 347

Query: 61  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKNDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPS+SPWGAPVLFVKK DGSMRLCIDYRELNKVT+K RYPLP
Sbjct: 348 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKKRYPLP 407

Query: 121 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRFRYGHYEFIVMSFGLTNAPA 180
           RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFR RYGHYEFIVMSFGLTNAP 
Sbjct: 408 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPV 467

Query: 181 VFMDLMNRVFREFLDTFVIVFINDILIYSKKEAEHEGHFVSFLGHVVSKARVSVNPAKIE 240
           VFMDLMNRVFREFLDTFVIVFI+DIL+YSK EAEHE H    L HVVSKA VSV+PAKIE
Sbjct: 468 VFMDLMNRVFREFLDTFVIVFIDDILLYSKTEAEHEEH----LRHVVSKAGVSVDPAKIE 527

Query: 241 AVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN 300
           AVTSWTRPSTVSEV SFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN
Sbjct: 528 AVTSWTRPSTVSEVRSFLGLAGYYRWFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQN 587

Query: 301 LKPKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASR 348
           LK KLVTAPVLT+PDGSGSFVIYSDASKKGLGCV MQQGKVVAYASR
Sbjct: 588 LKQKLVTAPVLTIPDGSGSFVIYSDASKKGLGCVSMQQGKVVAYASR 630

[Close]

BLAST of Cmc12g0322891 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 220 VSFLG--HVVSKARVSVNPAKIEAVTSWTRPSTVSEVCSFLGLAGYYRWFVENFSRIATP 279
           +++LG  H++S   VS +PAK+EA+  W  P   +E+  FLGL GYYR FV+N+ +I  P
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRP 89

Query: 280 LTQLTRKGAPFVWSKACEDSFQNLKPKLVTAPVLTVPDGSGSFV 322
           LT+L +K +   W++    +F+ LK  + T PVL +PD    FV
Sbjct: 90  LTELLKKNS-LKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc12g0322891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032794.1	1.9e-181	92.84	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gyp...	[more]
KAA0047433.1	3.2e-181	88.44	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036204.1	7.2e-181	87.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051051.1	9.4e-181	88.17	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0060839.1	1.2e-180	92.51	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0322891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	6.8e-57	35.76	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	9.8e-56	36.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q7LHG5	3.8e-52	34.59	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	6.6e-52	34.59	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.5e-51	31.27	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc12g0322891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E456	9.2e-182	92.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold57...	[more]
A0A5A7TV57	1.6e-181	88.44	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SY46	3.5e-181	87.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UC07	4.5e-181	88.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7V556	5.9e-181	92.51	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00700 PE...	[more]

BLAST of Cmc12g0322891 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-17	41.35	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 43..170 e-value: 1.0E-49 score: 170.4
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 49..321
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 49..321
None	No IPR available	CDD	cd01647	RT_LTR	coord: 76..227 e-value: 1.38339E-77 score: 234.027
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 290..347 e-value: 8.9E-15 score: 54.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 242..327 e-value: 3.9E-29 score: 102.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 112..241 e-value: 1.0E-49 score: 170.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 92..259 e-value: 2.0E-22 score: 79.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 73..262 score: 9.921066
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0322891.1	Cmc12g0322891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding