Cmc12g0322091 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0322091
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRNA-directed DNA polymerase homolog
LocationCMiso1.1chr12: 9615314 .. 9615817 (+)
RNA-Seq ExpressionCmc12g0322091
SyntenyCmc12g0322091
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCCTAAAGAATACCAAGTCTTACACGATCATATTGAAGACTTACTAAAAAAGGGCCACATCAAGCCAAGCCTAAGTCAATGCACTGTACTAGCACTACTCACACCAAAGAAGGATAGAAGTTGGAGGATGTGTGTAGACAACAGGGCTATTAACCAAATTACTGTGAAGTATCGGTTTTCTATCCCTTGGATTGGAGATCTTTTGGACCCACTAGGTAAGGCTACTATCTTCTCAAAAATTGATTTAAGGAGCGGCTGTCACCAAATACGGATCAGACCAATAGATGAATGGAAGACAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTATTGCCTTTTGGCTTATCCAATGCACCAAGTACCTTTATGAGGTTGATGAATAAAGTACTACATCCATTCTTAAACCAGTATATAATAGTTTACTTTGATGATATCCTTGTGTCTAGCAACAACCGTGAAGACCATCTGCAGCACTTAGGGAAACTGTTTTAA

mRNA sequence

ATGAGCCCTAAAGAATACCAAGTCTTACACGATCATATTGAAGACTTACTAAAAAAGGGCCACATCAAGCCAAGCCTAAGTCAATGCACTGTACTAGCACTACTCACACCAAAGAAGGATAGAAGTTGGAGGATGTGTGTAGACAACAGGGCTATTAACCAAATTACTGTGAAGTATCGGTTTTCTATCCCTTGGATTGGAGATCTTTTGGACCCACTAGGTAAGGCTACTATCTTCTCAAAAATTGATTTAAGGAGCGGCTGTCACCAAATACGGATCAGACCAATAGATGAATGGAAGACAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTATTGCCTTTTGGCTTATCCAATGCACCAAGTACCTTTATGAGGTTGATGAATAAAGTACTACATCCATTCTTAAACCAGTATATAATAGTTTACTTTGATGATATCCTTGTGTCTAGCAACAACCGTGAAGACCATCTGCAGCACTTAGGGAAACTGTTTTAA

Coding sequence (CDS)

ATGAGCCCTAAAGAATACCAAGTCTTACACGATCATATTGAAGACTTACTAAAAAAGGGCCACATCAAGCCAAGCCTAAGTCAATGCACTGTACTAGCACTACTCACACCAAAGAAGGATAGAAGTTGGAGGATGTGTGTAGACAACAGGGCTATTAACCAAATTACTGTGAAGTATCGGTTTTCTATCCCTTGGATTGGAGATCTTTTGGACCCACTAGGTAAGGCTACTATCTTCTCAAAAATTGATTTAAGGAGCGGCTGTCACCAAATACGGATCAGACCAATAGATGAATGGAAGACAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTATTGCCTTTTGGCTTATCCAATGCACCAAGTACCTTTATGAGGTTGATGAATAAAGTACTACATCCATTCTTAAACCAGTATATAATAGTTTACTTTGATGATATCCTTGTGTCTAGCAACAACCGTGAAGACCATCTGCAGCACTTAGGGAAACTGTTTTAA

Protein sequence

MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYRFSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLSNAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF
Homology
BLAST of Cmc12g0322091 vs. NCBI nr
Match: XP_016900497.1 (PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo] >TYK23248.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 133/167 (79.64%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP+EYQVLHDHIE+LLKKGHIKPSLS C V ALLTPKKD +WRMC+D RAIN+ITVKY 
Sbjct: 48  MSPEEYQVLHDHIEELLKKGHIKPSLSPCDVPALLTPKKDGTWRMCMDGRAINRITVKYC 107

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP IGDLLD LGKAT+FSKI+L+SG HQIRIRP D+WKTAFKTNEGLF+WLV+P GLS
Sbjct: 108 FPIPRIGDLLDQLGKATVFSKINLKSGYHQIRIRPGDKWKTAFKTNEGLFKWLVMPLGLS 167

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAPSTFMRLMN+VL+PFLN++I+VYFDDIL  SNN E+H+QHL KLF
Sbjct: 168 NAPSTFMRLMNQVLYPFLNRFIVVYFDDILEYSNNNEEHVQHLRKLF 214

BLAST of Cmc12g0322091 vs. NCBI nr
Match: XP_011648447.2 (uncharacterized protein LOC105434464 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 5.3e-73
Identity = 132/167 (79.04%), Postives = 149/167 (89.22%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP+EY+ LHDHIE+LLKKGHIKPSLS C V ALLT KKD SWRMCVD+RAIN+ITVKYR
Sbjct: 410 MSPQEYKTLHDHIEELLKKGHIKPSLSPCAVPALLTLKKDGSWRMCVDSRAINRITVKYR 469

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           FSIP I DLLD LGKA+IFSKIDL+SG HQIRIRP DEWKT FKT EGLFEW+V+PFGLS
Sbjct: 470 FSIPRISDLLDQLGKASIFSKIDLKSGYHQIRIRPGDEWKTTFKTKEGLFEWMVMPFGLS 529

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAP+TFMRLMN++LHPFLN++I+VYFDDILV S N E+HL HL K+F
Sbjct: 530 NAPNTFMRLMNQILHPFLNKFIVVYFDDILVYSTNNEEHLLHLRKMF 576

BLAST of Cmc12g0322091 vs. NCBI nr
Match: KAA0054966.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK22755.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 131/167 (78.44%), Postives = 144/167 (86.23%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP EY++LHD IE+LLKKGHIKPS S C V ALLTPKKD +WRMCVD+RAIN+ITVKYR
Sbjct: 682 MSPNEYKILHDAIEELLKKGHIKPSFSLCVVPALLTPKKDGTWRMCVDSRAINKITVKYR 741

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP + DLLD LG A IFSKIDLRS  HQIRIRP DEWKTAFKTNEGLFEWLV+PF LS
Sbjct: 742 FPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFKTNEGLFEWLVMPFDLS 801

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAPSTFMRLMNKVLHPFLN++IIVYFDDILV S   + HLQH+ +LF
Sbjct: 802 NAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHIDQLF 848

BLAST of Cmc12g0322091 vs. NCBI nr
Match: KAA0040321.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK23384.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 8.0e-69
Identity = 127/163 (77.91%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP EYQ+LH+HI+DLLKKGH KPSLS C   ALLTPKKD SWRMCVD+RAIN+ITVKYR
Sbjct: 381 MSPHEYQILHEHIKDLLKKGHFKPSLSPCAP-ALLTPKKDGSWRMCVDSRAINRITVKYR 440

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP IGDLLD LGKATIFSKIDLRSG HQIRIR  DEWKT FKTNEGLFEW+V+PFGLS
Sbjct: 441 FPIPRIGDLLDQLGKATIFSKIDLRSGYHQIRIRLGDEWKTTFKTNEGLFEWMVMPFGLS 500

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHL 164
           NAP+ FMRLMN+V HPFLN++I+VYFDDILV  N + +H+ HL
Sbjct: 501 NAPNIFMRLMNQVFHPFLNKFIVVYFDDILVYDNGKVEHMLHL 542

BLAST of Cmc12g0322091 vs. NCBI nr
Match: XP_020877200.1 (uncharacterized protein LOC110227444 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 111/166 (66.87%), Postives = 142/166 (85.54%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP+E++ L   +EDLL+KGHI+ SLS C V ALL PKKD +WRMCVD+RAIN+ITV+YR
Sbjct: 643 MSPQEHEELRRQVEDLLRKGHIRESLSPCAVPALLIPKKDGTWRMCVDSRAINKITVRYR 702

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP + DLLD +GKAT+F+K+DL+SG HQIRIRP DEWKTAFKT EGLFEWLV+PFGLS
Sbjct: 703 FPIPRLDDLLDQIGKATLFTKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLS 762

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKL 167
           NAPSTFMR+MN+ L PF+ +++++YFDDIL+ S++ +DH+ HL K+
Sbjct: 763 NAPSTFMRVMNQALRPFIGKFVVIYFDDILIFSSSLDDHISHLRKV 808

BLAST of Cmc12g0322091 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 7.3e-33
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           ++ K  Q ++  ++ LL    I PS S C+   +L PKKD ++R+CVD R +N+ T+   
Sbjct: 604 VTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDP 663

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F +P I +LL  +G A IF+ +DL SG HQI + P D +KTAF T  G +E+ V+PFGL 
Sbjct: 664 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLV 723

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHL 164
           NAPSTF R M         +++ VY DDIL+ S + E+H +HL
Sbjct: 724 NAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 764

BLAST of Cmc12g0322091 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.3e-33
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           ++ K  Q ++  ++ LL    I PS S C+   +L PKKD ++R+CVD R +N+ T+   
Sbjct: 630 VTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDP 689

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F +P I +LL  +G A IF+ +DL SG HQI + P D +KTAF T  G +E+ V+PFGL 
Sbjct: 690 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLV 749

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHL 164
           NAPSTF R M         +++ VY DDIL+ S + E+H +HL
Sbjct: 750 NAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 790

BLAST of Cmc12g0322091 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-32
Identity = 72/171 (42.11%), Postives = 104/171 (60.82%), Query Frame = 0

Query: 3   PKEY-QVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKD-----RSWRMCVDNRAINQIT 62
           P+ Y Q +   I+D+L +G I+ S S       + PKK      + +R+ +D R +N+IT
Sbjct: 216 PQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEIT 275

Query: 63  VKYRFSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLP 122
           V  R  IP + ++L  LG+   F+ IDL  G HQI + P    KTAF T  G +E+L +P
Sbjct: 276 VGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMP 335

Query: 123 FGLSNAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           FGL NAP+TF R MN +L P LN++ +VY DDI+V S + ++HLQ LG +F
Sbjct: 336 FGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVF 386

BLAST of Cmc12g0322091 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = 0

Query: 42  SWRMCVDNRAINQITVKYRFSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKT 101
           S RMC+D RA+ ++T+K ++ IP + DL D L +AT F+K+DLRSG  Q+RI   DE KT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 AFKTNEGLFEWLVLPFGLSNAPSTFMRLMNKVLHPFLNQYIIVYFDDILV---SSNNRED 161
              T  G FE+ V+PFGL+NA +TF  LMN VL+ +L+ +++VY DD++V    SN+  +
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 162 HLQHL 164
           H++HL
Sbjct: 125 HIKHL 129

BLAST of Cmc12g0322091 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 0

Query: 9   LHDHIEDLLKKGHIKPSLSQCTVLALLTPKKD-----RSWRMCVDNRAINQITVKYRFSI 68
           + + ++++L +G I+ S S       + PKK        +R+ +D R +N+IT+  R+ I
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 69  PWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLSNAP 128
           P + ++L  LGK   F+ IDL  G HQI +      KTAF T  G +E+L +PFGL NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 129 STFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           +TF R MN +L P LN++ +VY DDI++ S +  +HL  +  +F
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

BLAST of Cmc12g0322091 vs. ExPASy TrEMBL
Match: A0A5D3DIG3 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002940 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 133/167 (79.64%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP+EYQVLHDHIE+LLKKGHIKPSLS C V ALLTPKKD +WRMC+D RAIN+ITVKY 
Sbjct: 48  MSPEEYQVLHDHIEELLKKGHIKPSLSPCDVPALLTPKKDGTWRMCMDGRAINRITVKYC 107

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP IGDLLD LGKAT+FSKI+L+SG HQIRIRP D+WKTAFKTNEGLF+WLV+P GLS
Sbjct: 108 FPIPRIGDLLDQLGKATVFSKINLKSGYHQIRIRPGDKWKTAFKTNEGLFKWLVMPLGLS 167

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAPSTFMRLMN+VL+PFLN++I+VYFDDIL  SNN E+H+QHL KLF
Sbjct: 168 NAPSTFMRLMNQVLYPFLNRFIVVYFDDILEYSNNNEEHVQHLRKLF 214

BLAST of Cmc12g0322091 vs. ExPASy TrEMBL
Match: A0A1S4DWY8 (RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107990924 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 133/167 (79.64%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP+EYQVLHDHIE+LLKKGHIKPSLS C V ALLTPKKD +WRMC+D RAIN+ITVKY 
Sbjct: 48  MSPEEYQVLHDHIEELLKKGHIKPSLSPCDVPALLTPKKDGTWRMCMDGRAINRITVKYC 107

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP IGDLLD LGKAT+FSKI+L+SG HQIRIRP D+WKTAFKTNEGLF+WLV+P GLS
Sbjct: 108 FPIPRIGDLLDQLGKATVFSKINLKSGYHQIRIRPGDKWKTAFKTNEGLFKWLVMPLGLS 167

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAPSTFMRLMN+VL+PFLN++I+VYFDDIL  SNN E+H+QHL KLF
Sbjct: 168 NAPSTFMRLMNQVLYPFLNRFIVVYFDDILEYSNNNEEHVQHLRKLF 214

BLAST of Cmc12g0322091 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.4e-71
Identity = 131/167 (78.44%), Postives = 144/167 (86.23%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP EY++LHD IE+LLKKGHIKPS S C V ALLTPKKD +WRMCVD+RAIN+ITVKYR
Sbjct: 682 MSPNEYKILHDAIEELLKKGHIKPSFSLCVVPALLTPKKDGTWRMCVDSRAINKITVKYR 741

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP + DLLD LG A IFSKIDLRS  HQIRIRP DEWKTAFKTNEGLFEWLV+PF LS
Sbjct: 742 FPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFKTNEGLFEWLVMPFDLS 801

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKLF 168
           NAPSTFMRLMNKVLHPFLN++IIVYFDDILV S   + HLQH+ +LF
Sbjct: 802 NAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHIDQLF 848

BLAST of Cmc12g0322091 vs. ExPASy TrEMBL
Match: A0A5D3DIC3 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004500 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 127/163 (77.91%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSP EYQ+LH+HI+DLLKKGH KPSLS C   ALLTPKKD SWRMCVD+RAIN+ITVKYR
Sbjct: 381 MSPHEYQILHEHIKDLLKKGHFKPSLSPCAP-ALLTPKKDGSWRMCVDSRAINRITVKYR 440

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP IGDLLD LGKATIFSKIDLRSG HQIRIR  DEWKT FKTNEGLFEW+V+PFGLS
Sbjct: 441 FPIPRIGDLLDQLGKATIFSKIDLRSGYHQIRIRLGDEWKTTFKTNEGLFEWMVMPFGLS 500

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHL 164
           NAP+ FMRLMN+V HPFLN++I+VYFDDILV  N + +H+ HL
Sbjct: 501 NAPNIFMRLMNQVFHPFLNKFIVVYFDDILVYDNGKVEHMLHL 542

BLAST of Cmc12g0322091 vs. ExPASy TrEMBL
Match: A0A2U1P6A2 (Transposon Ty3-I Gag-Pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA189480 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62
Identity = 113/166 (68.07%), Postives = 138/166 (83.13%), Query Frame = 0

Query: 1   MSPKEYQVLHDHIEDLLKKGHIKPSLSQCTVLALLTPKKDRSWRMCVDNRAINQITVKYR 60
           MSPKE  +L + +E+LL+KGHI+ S+S C V ALLTPKKD SWRMCVD+RAIN+ITV+YR
Sbjct: 672 MSPKESDILREKVEELLRKGHIQESISPCAVPALLTPKKDGSWRMCVDSRAINKITVRYR 731

Query: 61  FSIPWIGDLLDPLGKATIFSKIDLRSGCHQIRIRPIDEWKTAFKTNEGLFEWLVLPFGLS 120
           F IP + DLLD L  A +FSKIDLRSG HQIRI+P DEWKTAFKT +GL+EWLV+PFGLS
Sbjct: 732 FPIPRLDDLLDQLSGAKLFSKIDLRSGYHQIRIKPGDEWKTAFKTKDGLYEWLVMPFGLS 791

Query: 121 NAPSTFMRLMNKVLHPFLNQYIIVYFDDILVSSNNREDHLQHLGKL 167
           NAPSTFMRLM +VL PF+ ++++VYFDDILV S   ++HL HL K+
Sbjct: 792 NAPSTFMRLMTQVLRPFMGKFVVVYFDDILVYSQTEKEHLDHLRKV 837

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016900497.12.4e-7379.64PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo] >TYK23248.1 RNA-di... [more]
XP_011648447.25.3e-7379.04uncharacterized protein LOC105434464 [Cucumis sativus][more]
KAA0054966.11.1e-7078.44transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0040321.18.0e-6977.91RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK23384.1 ... [more]
XP_020877200.12.9e-6366.87uncharacterized protein LOC110227444 [Arabidopsis lyrata subsp. lyrata][more]
Match NameE-valueIdentityDescription
Q993157.3e-3342.94Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG57.3e-3342.94Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P043233.6e-3242.11Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P318431.1e-2848.00RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1[more]
P208251.4e-2837.80Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Match NameE-valueIdentityDescription
A0A5D3DIG31.2e-7379.64RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4DWY81.2e-7379.64RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107990924 PE=4... [more]
A0A5D3DGR05.4e-7178.44Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3DIC33.9e-6977.91RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A2U1P6A22.0e-6268.07Transposon Ty3-I Gag-Pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA1894... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..121
e-value: 4.4E-61
score: 207.9
NoneNo IPR availablePANTHERPTHR24559:SF319SUBFAMILY NOT NAMEDcoord: 14..147
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 14..147
NoneNo IPR availableCDDcd01647RT_LTRcoord: 20..167
e-value: 1.1932E-62
score: 188.958
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 37..165
e-value: 2.9E-23
score: 82.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..167
score: 9.080607
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 61..167
e-value: 4.4E-61
score: 207.9
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0322091.1Cmc12g0322091.1mRNA