Cmc12g0322001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0322001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	CMiso1.1chr12: 9342087 .. 9347814 (+)
RNA-Seq Expression	Cmc12g0322001
Synteny	Cmc12g0322001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATATCTTCTTCTTCAAAGTCACGGCCTCTCAATCTCTATTCTCAGGTTGCATCTTTCTCACTCAGCTCAGTAACTCACCTTCACGACTTCAACCTCACGGCGGCCGTCGCTCCACCTCTCCATTGCTCATTATCCCACTCTCAGATTTTCACCTCTCTTGACTCAGACTCACGTTCACGTCCTCCACCAGTGACCGACTACCGCTCCTCCTCTGTCTCACGCTCACCCCTCTGACTCTCACCTCACGGCTCCAAATCGCAGAGAGCCGTCCATTAAAACGGTTTTTGCAGCTTTTTTCTCCCTTCAGTTCCCCTCTTGAATAGAAGATTCTTGTGGGCATTTGTTGCTTTGAAGAATATCTTCAAATTTTGAATCTTATAATCAATTTTATTTATGGTATGGCTTCTTCTGTTGTCTTTCATCATTGTGTTGCCTTGAAGTATGTTCCTCAAAATACAAGTTTGAAAATGTCTATCGGATTTTGTTCCATTTCGTACTTCACATATGTTTTCAGTATTGTTTATAGTCTGCTGCACTGCATTCTTGTTATTTCTGGGGTAGTCGAACAAATCCAAACCATGGTGGATTTGTGTGTCTTTTATTAAGTTAGAGTTGAAGTGTTTGGTGGAGATAGTTATTTTATATGTCATTTTCTTGTGAAATTCATGGTTGTTTCTTCCATAGGACAAATTCGAAGCAAGGCCAAGGAGCTAGAGGAAGAAGCTAGAACGAGACCAAGGGGCTACAATGTATAAAAGAGACGAGAGAGAGAGAAGACCGAAGGGAAACAGAATGTATCATTGATGCTACAAATTGGATAGGTTCATGTAGTTTTGTTGTCACTTGTAAGGTCAAGTTTTGGTAGAAAACTATTTTGATAGCCCCGTGGAGTCTTTACTTTGCACCTTCAAAGCTTCGCTCTCAGAATTATGCATTCCATTGTCTCAGCAACTTCAGTGTCTTCCATTCTGGTGAAAGGAAATGGAGGAATTGGCTGCCAGATTACGATGGTTCATTTCAAGGCTAACTCCAGAAGACGCCCACCCAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTGACCCTGCCGTCAACCAATTCTTGAACAACAAAACCTCTGCCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGATTATACCAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCATCACTCTTCCAAGGGAGAATCCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTGCCACACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATCCGCCCAACAACAACGGTGTCTTCGCGTGCTTTGCTGTCTAAGAAAGTCTACAAGCGTCCTGATTTTCTTATTGGCCTTGCTAGGGCGATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAGGAACAACGTCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACCGTTGAGGTCCTTTCAAGGAACCACGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTGGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTTGTAAAAACCCTGATAAAAACGTATTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGAGAAGCCTTGAAGTTGAACCAACAAGATAGTACAACTATAATTAAGGTCTGCACAAGGCTTCGTAAATTTGAAATTGCTGAGAAACTTTATTACTGGTATGTTGAATCTGGACATGAACCGAGTATGGTTATGTATACTGCCTTAGTTCATAGTCGCTACTCAGACAGGAAATATAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGTCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAATGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTTCCCCTACATATGATGTATATCGGAATATGATCACCATTTATTTAGTTTCAGGGAGGTTAGCCAAGTCTAAGGAAATTTATAAGGAAGCGGAGAATGCTGGATTTATCATGGATAAACAAATTACTTCAATATTGTTGCAAGCAAAAAGATGATTCACCTGTGGCAAGAGATTTTTTTATCTATCACCGAGTTGCACCATCAGTTTGCATATCATCGAGTAGGTGAGTTGCTTTCAATGTATTGGAATTGCATTTCATCTGCACTAAATAAATTGTTAACGAATATTCTTTGTTTTCCCTAATCTACCACGTTCATATTGATTGCTCGATGGACAGATGCCATGTGCATGTGGTTGTGTATGGCAGTCCGGGTGCTTGTGTGTTTCAATAAAGAAAATTTATTGGTTGTCCTTTCTACTTAACCGTTAAATCATGACATCTAACCTATGAATTTCAATAGTACATCTTAGAAAGTACTTGGTTTTTTGCTTCTGGATGTGTATACATACATGTGATTCACATAATGTCTTATGGACTTCTTTTTTTGTTTGTTTGTTTTTTTCCTTTTGAAAACAAAGCATCAAGCTCAAATGCATTACGCCAGAAAACTCTGATTTGCCCCAATACATTGTCATAGCCAATCCAGCACATCAGTAACCCAACAAGAGGAATCCCGACAAGAAAGAGCAAATTTGGCCAATTTGGGCCTCACTATTGCTCGTTCTGGGCAATTAATTAAAGTGAAAGCATCCTCATAAATAACCTCATATGCAGTTAAGGAGAAGTCGAAAGAATGTCTCCTGGACTAATAATATACATCATACAAACTCAACGACGATTTTGACATATACTGACCAACAATTCTTATTCTCATCTAGCTTCTATAGATTCTTTGTTCCACTATTCAATGAAGTAACTCAATGCTTTGTCCTTCAAGTACCTGTTTCTAGATAAGTCTCATAAAAGTGTACCATTCCTGTTGTAGTTATAGTCATTACAGTTGTGCTTCTGGTACCAAAACATCCCTGTTGCTGTTTTAGTGGTTGAGAAGGTTTGAATTACATATTGCTGTTTCTAGTGGTTATGCTGTATCTGTTTATGACTTTGTGAACGTAATCTCAGGCATATGATATTTGCATTTCAAAAAATCTTTTTGGGAGCAGGTCTCTTTCCTGGAAGAATGGGAAACGCAAAACAAGCCCTTGCTGTCATCATTGATAAATTAGGAGATATAGAAGAGGTACTGGCATTATCTTTTGACTGAAGGCAGTTTGGCTTCCAGATAGCACGCAAATTTGCATTTGAGTTCTCTTTTCGCTTTTGAGTTGTGGTTACGAACTAGTTATAAAATCTTGTTGTCATCATGGACAGGCAGTGGAGTTTGTTAGTCTGCAACATGATGATGAGCTCTGGGCAGAACTGATAAAGCTGTCTTCACAAGGCTGAAATGGTATCAATAAATGCTCTTCTCTTATTGTCTAATTTTCCATACACTGATTTATTTTAAAGGGTTTGTCCTCTATTATTGTCAGCTTGGCATGTTATTGGAGCACACAGTTGGCAATCTATATCCTCTTTGTATTGTCAACATGGTTCCTGATGGTTTAGAGATACCTTGCTTTTCTTCACTTTCTGAAATCTTTAGTTTTCAATTTCTGTGGTGTTTATATCTGTTGTCTTTCTATTGCAAGTGGCATATATCCCTTTAAAAGGAACTGTGTTTCCCTTTCACTTGTATAATTCTATTTATTTAATGTTTTAATGTTGTCCAGCCTAGAATTACGTTAGTGGTGGGTTAGAAATCCAGGTCTATCACAATTCACAGTGCTTCTTAAAACTACTTGAATGAATTCTGTAGTTGCTCCACCTTTCTATATTCTTAATTTTGGAAACGATTTGTATTTCCTGATTTGGTCTTGGTCACGTCTTTTATAGCACAAAATCCTCAGCATATTAAACTACTTCAAAAATTTTAGTCCTTGGGGCTATCGCTTCTCTTCTCTGAGACAACAGGTTGTGCATAGCATATAGCACTTATACTATTTGTACTGGCAAAAAGTAGTAAAGAAAACCACGTGGGAATCGGATCTTGGCGTTTTTTGTCGAATCAGATATGAAGATGATTTCATATCGTTTTTTGATAATGCATGGTTTTGTATTGTTTATTGATAATGTCTCGTGTATTTATTCTTCTGTTGTCATTAATTTCTGCACAATTTACAAGGTTACTGTTTATACGGTTAGTGTTTTGTAATGTGCGCCTATACTCAGTCCATGTAATCTCTGTTTGAAATTGTCTTAAGCTGTTTGTAGTTGATTTTTGATGCACTAAAACTGGGTTATTATCTTTCTTGCTACTTCCAGATATTTTTTTCTCAGATTTTTTAATTCTCTGACAGGTTGTGTCACAATGAGTCAGGAAACTAAGCATTTTAACCACCAGTTTTGTTGTCAGATTACAGGTTGCGCCTGCATTTAAACAAATTGAACGTATGTGAAATTAGATTTATCATTCGTATTTGGATGTTCATTGGTCTAAAATCCTTCCCTTGTTTCTATTTCAGCCTCCGGGATCGGCTAGTTAAAATCATTACTGATTACAGGACGGAAACCAGTCTTAGACATGGATGCAATGATATTTTAAAGGTATTTTCATGCGAGAAATTTTCTTGCTTCACTAGAACTGAGCCTTGTGCTATCAAGATAGTAATGCGTGATTTCCAACAGCCCGACACTGAGTCTACTCGTTAAGTACTACAAATAGGCCAGACATGGAATTTACTTGAGCAATGAAGAAGATGAAGTACATGGGAAGAGGAATGGAAATAAGGTTTCTCGATCAATTAAAAACCTTCAAATGTTAAAATGATGGAGGTTTAAGTAGAAAACTCGGGGAGGCACTCGAGGCTCATATGATCCATTTTTAATACAAAACATATCCGTCGTCCTGTTCTTTTGCTGCCATGTGTATCACGAGACTTGTCTCATAGAATCAACCTCCAATCTTGATGCTAAGAAAGGGACTGGAGACATAGAGGATGACGAAGACGGTGAGGACAATACAGATGTGGGCCAACTGCTTCTTCCGAGACTTGACAATGCTTTGTGCCATCATGGTTTTCGTTATTTTTCTTCGTCTTTGTTGGGCTTTTTGAATTTGTTTATGAGCATGCTAATATGTACAGGCCATCGTCCCTTTCCTTGCATCGCTATTTGTTACTCTTTTTTTTCCTTTTATCAAAGTCTATAATTAGTTGGAAGATTTTGGTTGATGGGTTGTATCCATTTTCTTTTTCATACAAAGCTTTTTAAGTTATGCTCAGGTTTGTAGTCGAGTTTTGTTAGGTTAGCTGATTTATGGATTACAAAAGGTAATCAACATTTGTATATTTCTTTTTTCAACTTCAGTTCTTCTGAGAATTGTAACCTCTTATAATCTCAATAATATATATTCATGAATAATATCTGTGACGAAAAGT

mRNA sequence

TTTATATCTTCTTCTTCAAAGTCACGGCCTCTCAATCTCTATTCTCAGGTTGCATCTTTCTCACTCAGCTCAGTAACTCACCTTCACGACTTCAACCTCACGGCGGCCGTCGCTCCACCTCTCCATTGCTCATTATCCCACTCTCAGATTTTCACCTCTCTTGACTCAGACTCACGTTCACGTCCTCCACCAGTGACCGACTACCGCTCCTCCTCTGTCTCACGCTCACCCCTCTGACTCTCACCTCACGGCTCCAAATCGCAGAGAGCCGTCCATTAAAACGGTTTTTGCAGCTTTTTTCTCCCTTCAGTTCCCCTCTTGAATAGAAGATTCTTGTGGGCATTTGTTGCTTTGAAGAATATCTTCAAATTTTGAATCTTATAATCAATTTTATTTATGGACAAATTCGAAGCAAGGCCAAGGAGCTAGAGGAAGAAGCTAGAACGAGACCAAGGGGCTACAATGTATAAAAGAGACGAGAGAGAGAGAAGACCGAAGGGAAACAGAATGTATCATTGATGCTACAAATTGGATAGGTTCATGTAGTTTTGTTGTCACTTGTAAGGTCAAGTTTTGGTAGAAAACTATTTTGATAGCCCCGTGGAGTCTTTACTTTGCACCTTCAAAGCTTCGCTCTCAGAATTATGCATTCCATTGTCTCAGCAACTTCAGTGTCTTCCATTCTGGTGAAAGGAAATGGAGGAATTGGCTGCCAGATTACGATGGTTCATTTCAAGGCTAACTCCAGAAGACGCCCACCCAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTGACCCTGCCGTCAACCAATTCTTGAACAACAAAACCTCTGCCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGATTATACCAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCATCACTCTTCCAAGGGAGAATCCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTGCCACACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATCCGCCCAACAACAACGGTGTCTTCGCGTGCTTTGCTGTCTAAGAAAGTCTACAAGCGTCCTGATTTTCTTATTGGCCTTGCTAGGGCGATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAGGAACAACGTCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACCGTTGAGGTCCTTTCAAGGAACCACGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTGGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTTGTAAAAACCCTGATAAAAACGTATTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGAGAAGCCTTGAAGTTGAACCAACAAGATAGTACAACTATAATTAAGTTTCAGGGAGGTTAGCCAAGTCTAAGGAAATTTATAAGGAAGCGGAGAATGCTGGATTTATCATGGATAAACAAATTACTTCAATATTGTTGCAAGCAAAAAGATGATTCACCTGTGGCAAGAGATTTTTTTATCTATCACCGAGTTGCACCATCAGTTTGCATATCATCGAGTAGGTCTCTTTCCTGGAAGAATGGGAAACGCAAAACAAGCCCTTGCTGTCATCATTGATAAATTAGGAGATATAGAAGAGGCAGTGGAGTTTGTTAGTCTGCAACATGATGATGAGCTCTGGGCAGAACTGATAAAGCTGTCTTCACAAGGCTGAAATGGTTGTGTCACAATGAGTCAGGAAACTAAGCATTTTAACCACCAGTTTTGTTGTCAGATTACAGCCTCCGGGATCGGCTAGTTAAAATCATTACTGATTACAGGACGGAAACCAGTCTTAGACATGGATGCAATGATATTTTAAAGCCCGACACTGAGTCTACTCGTTAAGTACTACAAATAGGCCAGACATGGAATTTACTTGAGCAATGAAGAAGATGAAGTACATGGGAAGAGGAATGGAAATAAGGTTTCTCGATCAATTAAAAACCTTCAAATGTTAAAATGATGGAGGTTTAAGTAGAAAACTCGGGGAGGCACTCGAGGCTCATATGATCCATTTTTAATACAAAACATATCCGTCGTCCTGTTCTTTTGCTGCCATGTGTATCACGAGACTTGTCTCATAGAATCAACCTCCAATCTTGATGCTAAGAAAGGGACTGGAGACATAGAGGATGACGAAGACGGTGAGGACAATACAGATGTGGGCCAACTGCTTCTTCCGAGACTTGACAATGCTTTGTGCCATCATGGTTTTCGTTATTTTTCTTCGTCTTTGTTGGGCTTTTTGAATTTGTTTATGAGCATGCTAATATGTACAGGCCATCGTCCCTTTCCTTGCATCGCTATTTGTTACTCTTTTTTTTCCTTTTATCAAAGTCTATAATTAGTTGGAAGATTTTGGTTGATGGGTTGTATCCATTTTCTTTTTCATACAAAGCTTTTTAAGTTATGCTCAGGTTTGTAGTCGAGTTTTGTTAGGTTAGCTGATTTATGGATTACAAAAGGTAATCAACATTTGTATATTTCTTTTTTCAACTTCAGTTCTTCTGAGAATTGTAACCTCTTATAATCTCAATAATATATATTCATGAATAATATCTGTGACGAAAAGT

Coding sequence (CDS)

ATGCATTCCATTGTCTCAGCAACTTCAGTGTCTTCCATTCTGGTGAAAGGAAATGGAGGAATTGGCTGCCAGATTACGATGGTTCATTTCAAGGCTAACTCCAGAAGACGCCCACCCAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTGACCCTGCCGTCAACCAATTCTTGAACAACAAAACCTCTGCCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGATTATACCAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCATCACTCTTCCAAGGGAGAATCCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTGCCACACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATCCGCCCAACAACAACGGTGTCTTCGCGTGCTTTGCTGTCTAAGAAAGTCTACAAGCGTCCTGATTTTCTTATTGGCCTTGCTAGGGCGATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAGGAACAACGTCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACCGTTGAGGTCCTTTCAAGGAACCACGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTGGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTTGTAAAAACCCTGATAAAAACGTATTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGAGAAGCCTTGAAGTTGAACCAACAAGATAGTACAACTATAATTAAGTTTCAGGGAGGTTAG

Protein sequence

MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFLNNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKFQGG

Homology

[Close]

BLAST of Cmc12g0322001 vs. NCBI nr
Match: KAA0052071.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00686.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 677.2 bits (1746), Expect = 7.7e-191
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 346

[Close]

BLAST of Cmc12g0322001 vs. NCBI nr
Match: XP_008462173.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462181.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462189.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902994.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902996.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo])

HSP 1 Score: 677.2 bits (1746), Expect = 7.7e-191
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 346

[Close]

BLAST of Cmc12g0322001 vs. NCBI nr
Match: XP_004139567.1 (pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_011654198.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_031739920.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_031739926.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >KGN64877.1 hypothetical protein Csa_022712 [Cucumis sativus])

HSP 1 Score: 645.2 bits (1663), Expect = 3.3e-181
Identity = 328/346 (94.80%), Postives = 334/346 (96.53%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M SIVSATSVSSILVKGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQF 
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFF 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSP FTDLISSKIFQDEHEEIHA+DYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPPFTDLISSKIFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYKRPDFLIGLAR IRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKV VNLEEFTKLASRGVLEAMMRGFI+GGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKN+LVLTLLEELGQREALKLNQQD TTI+K
Sbjct: 301 PSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVK 346

[Close]

BLAST of Cmc12g0322001 vs. NCBI nr
Match: XP_038893977.1 (pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida] >XP_038893978.1 pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida])

HSP 1 Score: 603.6 bits (1555), Expect = 1.1e-168
Identity = 315/352 (89.49%), Postives = 326/352 (92.61%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M SI SATSVSSILVKGNGGIGCQ TM HFK NSRRR PKNLLCPRRAKLPPDPAVNQFL
Sbjct: 1   MDSIFSATSVSSILVKGNGGIGCQATMAHFKTNSRRRLPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQ------DEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQG 120
            NKTSAPSPS TDLISS+IFQ      DEHEEIHAYDY KDTDVVWDSDEIEAISSLFQG
Sbjct: 61  KNKTSAPSPSLTDLISSEIFQLPKGEDDEHEEIHAYDY-KDTDVVWDSDEIEAISSLFQG 120

Query: 121 RIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLA 180
           RIPQKPGKLNR+RPLPLPLPHKLRP  LP+PKIRP   VSSRALLSK+VYKRPDFLIGLA
Sbjct: 121 RIPQKPGKLNRDRPLPLPLPHKLRPSGLPDPKIRPRIMVSSRALLSKQVYKRPDFLIGLA 180

Query: 181 RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPD 240
           RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTF W QEQ RLFPD
Sbjct: 181 RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFSWAQEQPRLFPD 240

Query: 241 DRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKK 300
           DRVLASTVEVL+RNHELKVP++LEEFTKLASRGVLEAM+RGFIKGGSLNLAWKLLVAAKK
Sbjct: 241 DRVLASTVEVLARNHELKVPLDLEEFTKLASRGVLEAMVRGFIKGGSLNLAWKLLVAAKK 300

Query: 301 GKRMLDPSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
            KR+LDPSVYVKLILEL KNPDKNVLVLTLL+ELGQREAL LNQQD+TTIIK
Sbjct: 301 RKRLLDPSVYVKLILELGKNPDKNVLVLTLLDELGQREALTLNQQDTTTIIK 351

[Close]

BLAST of Cmc12g0322001 vs. NCBI nr
Match: XP_022951807.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 541.2 bits (1393), Expect = 6.6e-150
Identity = 283/358 (79.05%), Postives = 307/358 (85.75%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M S+ S T++SSILVK NGGI CQI + HF+ NSRRRPPKNLL PRR KLPPDP VNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  NNKTSAPSP--SFTDLISSKIF------QDEHEEIHAYDY----TKDTDVVWDSDEIEAI 120
             +TS P P  SF DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SK+VYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQ 240
           FLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 RRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKKGKRMLDPSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           LVAAK GKRMLDPSVYVKLILE+ KNPDKN+LVL LL+ELGQREAL LNQQD++ IIK
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIK 358

[Close]

BLAST of Cmc12g0322001 vs. ExPASy Swiss-Prot
Match: Q5XET4 (Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX=3702 GN=EMB975 PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.9e-79
Identity = 176/332 (53.01%), Postives = 227/332 (68.37%), Query Frame = 0


Query: 19  GGIGCQITMVH-FKANSRRRPPKNLLCPRRAKLPPDPAVNQFLNNKTSAPSPSFTDLISS 78
           G IG  +T V+  + N  ++  KNL  PRR KLPPD  VN FL      P          
Sbjct: 23  GNIG--VTRVNASQRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPKIEP---------- 82

Query: 79  KIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKL 138
            +  D+ E++       D  VVW+ +EIEAISSLFQ RIPQKP K +R RPLPLP PHKL
Sbjct: 83  LVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHKL 142

Query: 139 RPPRLPNPKIRPTTTVSSRAL--LSKKVYKRPDFLIGLARAIRDL-SPEENVSKVLNRWG 198
           RP  LP PK      + S AL  +SK+VYK P FLIGLAR I+ L S + +VS VLN+W 
Sbjct: 143 RPLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWV 202

Query: 199 PFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLASTVEVLSRNHELKVP 258
            FL+KGSLS TI+ELGHMGLP+RAL+T+ W ++   L PD+R+LAST++VL+++HELK+ 
Sbjct: 203 SFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL- 262

Query: 259 VNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELCKN 318
             L+    LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ KN
Sbjct: 263 --LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKN 322

Query: 319 PDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PDK  LV+ LLEEL +RE LKL+QQD T+I+K
Sbjct: 323 PDKYHLVVALLEELKKREDLKLSQQDCTSIMK 336

[Close]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL
Match: A0A1S3CGD0 (pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN=LOC103500594 PE=4 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 3.7e-191
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 346

[Close]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL
Match: A0A5D3BQZ3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00260 PE=4 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 3.7e-191
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 346

[Close]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL
Match: A0A0A0LVM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.6e-181
Identity = 328/346 (94.80%), Postives = 334/346 (96.53%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M SIVSATSVSSILVKGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQF 
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFF 60

Query: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
           NNKTSAPSP FTDLISSKIFQDEHEEIHA+DYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPPFTDLISSKIFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYKRPDFLIGLAR IRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKV VNLEEFTKLASRGVLEAMMRGFI+GGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PSVYVKLILEL KNPDKN+LVLTLLEELGQREALKLNQQD TTI+K
Sbjct: 301 PSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVK 346

[Close]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL
Match: A0A6J1GIP2 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454537 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 3.2e-150
Identity = 283/358 (79.05%), Postives = 307/358 (85.75%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M S+ S T++SSILVK NGGI CQI + HF+ NSRRRPPKNLL PRR KLPPDP VNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  NNKTSAPSP--SFTDLISSKIF------QDEHEEIHAYDY----TKDTDVVWDSDEIEAI 120
             +TS P P  SF DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SK+VYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQ 240
           FLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 RRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKKGKRMLDPSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           LVAAK GKRMLDPSVYVKLILE+ KNPDKN+LVL LL+ELGQREAL LNQQD++ IIK
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIK 358

[Close]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL
Match: A0A6J1DI37 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020698 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.8e-148
Identity = 280/355 (78.87%), Postives = 303/355 (85.35%), Query Frame = 0


Query: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60
           M  I S++ VSSI+VKGNGGI CQI+M  F AN+RRR PKNLL PRR KLPPDP VNQFL
Sbjct: 1   MDCIFSSSIVSSIMVKGNGGISCQISMARFMANARRRLPKNLLNPRRTKLPPDPGVNQFL 60

Query: 61  NNKTSAPSPSFTDLISSKIFQ------DEHEEIHAYDY---TKDTDVVWDSDEIEAISSL 120
            N TS   PSFTD  SS+  +      D+HEE    +Y    KD +++WDSDEIEAISSL
Sbjct: 61  KNTTSGSGPSFTDFTSSEKIEFPEEEHDDHEEADTENYFVDDKDGEIIWDSDEIEAISSL 120

Query: 121 FQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLI 180
           FQGRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIR  T V SRA LSK+VYKRPDFLI
Sbjct: 121 FQGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRARTGVPSRASLSKQVYKRPDFLI 180

Query: 181 GLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRL 240
           GLARAIRDLS EENVSKVLNRW PFL KGSLSLTI+ELGHMGL DRAL++FCW QEQ RL
Sbjct: 181 GLARAIRDLSREENVSKVLNRWAPFLLKGSLSLTIRELGHMGLADRALQSFCWAQEQPRL 240

Query: 241 FPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVA 300
           FPDDRVLASTVEVLSRNHELKVP+NLEEFT+LASRGVLEAM+RGFIKGGSLNLAWKLLV 
Sbjct: 241 FPDDRVLASTVEVLSRNHELKVPLNLEEFTRLASRGVLEAMIRGFIKGGSLNLAWKLLVV 300

Query: 301 AKKGKRMLDPSVYVKLILELCKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           AKKG RMLDPSVYVKLILEL KNPDKN+LVLTLL+ELGQREALKLNQQD+T I+K
Sbjct: 301 AKKGNRMLDPSVYVKLILELGKNPDKNMLVLTLLDELGQREALKLNQQDTTAIMK 355

[Close]

BLAST of Cmc12g0322001 vs. TAIR 10
Match: AT2G01860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 296.2 bits (757), Expect = 3.5e-80
Identity = 176/332 (53.01%), Postives = 227/332 (68.37%), Query Frame = 0


Query: 19  GGIGCQITMVH-FKANSRRRPPKNLLCPRRAKLPPDPAVNQFLNNKTSAPSPSFTDLISS 78
           G IG  +T V+  + N  ++  KNL  PRR KLPPD  VN FL      P          
Sbjct: 23  GNIG--VTRVNASQRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPKIEP---------- 82

Query: 79  KIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKL 138
            +  D+ E++       D  VVW+ +EIEAISSLFQ RIPQKP K +R RPLPLP PHKL
Sbjct: 83  LVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHKL 142

Query: 139 RPPRLPNPKIRPTTTVSSRAL--LSKKVYKRPDFLIGLARAIRDL-SPEENVSKVLNRWG 198
           RP  LP PK      + S AL  +SK+VYK P FLIGLAR I+ L S + +VS VLN+W 
Sbjct: 143 RPLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWV 202

Query: 199 PFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLASTVEVLSRNHELKVP 258
            FL+KGSLS TI+ELGHMGLP+RAL+T+ W ++   L PD+R+LAST++VL+++HELK+ 
Sbjct: 203 SFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL- 262

Query: 259 VNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELCKN 318
             L+    LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ KN
Sbjct: 263 --LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKN 322

Query: 319 PDKNVLVLTLLEELGQREALKLNQQDSTTIIK 347
           PDK  LV+ LLEEL +RE LKL+QQD T+I+K
Sbjct: 323 PDKYHLVVALLEELKKREDLKLSQQDCTSIMK 336

The following BLAST results are available for this feature:

BLAST of Cmc12g0322001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052071.1	7.7e-191	99.71	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00686...	[more]
XP_008462173.1	7.7e-191	99.71	PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] ...	[more]
XP_004139567.1	3.3e-181	94.80	pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_0116...	[more]
XP_038893977.1	1.1e-168	89.49	pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida] >XP_03...	[more]
XP_022951807.1	6.6e-150	79.05	pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita mosc...	[more]

BLAST of Cmc12g0322001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XET4	4.9e-79	53.01	Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cmc12g0322001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGD0	3.7e-191	99.71	pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3BQZ3	3.7e-191	99.71	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LVM0	1.6e-181	94.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1	[more]
A0A6J1GIP2	3.2e-150	79.05	pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita mo...	[more]
A0A6J1DI37	1.8e-148	78.87	pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Momordica ch...	[more]

BLAST of Cmc12g0322001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01860.1	3.5e-80	53.01	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 170..331 e-value: 3.9E-8 score: 35.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..149
None	No IPR available	PANTHER	PTHR46128:SF179	TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEIN	coord: 69..346
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 69..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0322001.1	Cmc12g0322001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding