Cmc12g0320761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0320761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 7441489 .. 7442028 (+)
RNA-Seq Expression	Cmc12g0320761
Synteny	Cmc12g0320761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTAGTAAACTACTGAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATACTAGAGAGTCAGAAGTTTCCTTGTCCTCCGAACCAGTGGTAAGGGAGTACCCTGATGTTTTCCCCGACGAGCTTCCAGGACTTCCGCCTTCCAGGGAGATAGACTTCGCCATTGAGTTAGAGCCAGGCACTGCTCCTATCTCAAGGGCCCCTTATAGAATGGCCCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAGGAGTTGTTGGATAAGGGTTTCATCCGACCCAGTGTGTCACCTCGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTAACAGTTAAGAATCGCTACTCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCCAAGATCGACCTGCGATCAGGCTACCACCAGTTGAGGATCAGGGATAGTGACATTCCTAAGACGGCCTTTCATTCGAGATAG

mRNA sequence

ATGAAGGCTAGTAAACTACTGAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATACTAGAGAGTCAGAAGTTTCCTTGTCCTCCGAACCAGTGGTAAGGGAGTACCCTGATGTTTTCCCCGACGAGCTTCCAGGACTTCCGCCTTCCAGGGAGATAGACTTCGCCATTGAGTTAGAGCCAGGCACTGCTCCTATCTCAAGGGCCCCTTATAGAATGGCCCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAGGAGTTGTTGGATAAGGGTTTCATCCGACCCAGTGTGTCACCTCGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTAACAGTTAAGAATCGCTACTCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCCAAGATCGACCTGCGATCAGGCTACCACCAGTTGAGGATCAGGGATAGTGACATTCCTAAGACGGCCTTTCATTCGAGATAG

Coding sequence (CDS)

ATGAAGGCTAGTAAACTACTGAGCCAGGGTACTTGGGGCATCTTGGCAAGCGTAGTAGATACTAGAGAGTCAGAAGTTTCCTTGTCCTCCGAACCAGTGGTAAGGGAGTACCCTGATGTTTTCCCCGACGAGCTTCCAGGACTTCCGCCTTCCAGGGAGATAGACTTCGCCATTGAGTTAGAGCCAGGCACTGCTCCTATCTCAAGGGCCCCTTATAGAATGGCCCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAGGAGTTGTTGGATAAGGGTTTCATCCGACCCAGTGTGTCACCTCGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTAACAGTTAAGAATCGCTACTCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCCAAGATCGACCTGCGATCAGGCTACCACCAGTTGAGGATCAGGGATAGTGACATTCCTAAGACGGCCTTTCATTCGAGATAG

Protein sequence

MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR

Homology

[Close]

BLAST of Cmc12g0320761 vs. NCBI nr
Match: KAA0035189.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK21802.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 9.1e-95
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL
Sbjct: 330 MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 389

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI
Sbjct: 390 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 449

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR
Sbjct: 450 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 508

[Close]

BLAST of Cmc12g0320761 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 413 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 472

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 473 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 532

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVT+KNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAFHSR
Sbjct: 533 DYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFHSR 591

[Close]

BLAST of Cmc12g0320761 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 481 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 540

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 541 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 600

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 601 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 659

[Close]

BLAST of Cmc12g0320761 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1    MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
            MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 1145 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 1204

Query: 61   EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
            EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 1205 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 1264

Query: 121  DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
            DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 1265 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 1323

[Close]

BLAST of Cmc12g0320761 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 718

[Close]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 6.0e-25
Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  REYPDVFPDELPGLPP---SREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLD 94
           ++Y ++  ++LP  P    +  +   IE++PG       PY +     +E+   +Q+LLD
Sbjct: 562 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 621

Query: 95  KGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQGATI 154
             FI PS SP  +PV+ V KKDG+ RLC+DY+ LNK T+ + + LPRID+L  ++  A I
Sbjct: 622 NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 681

Query: 155 FSKIDLRSGYHQLRIRDSDIPKTAF 177
           F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 682 FTTLDLHSGYHQIPMEPKDRYKTAF 706

[Close]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 6.0e-25
Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 35  REYPDVFPDELPGLPP---SREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLD 94
           ++Y ++  ++LP  P    +  +   IE++PG       PY +     +E+   +Q+LLD
Sbjct: 588 QKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLD 647

Query: 95  KGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQGATI 154
             FI PS SP  +PV+ V KKDG+ RLC+DY+ LNK T+ + + LPRID+L  ++  A I
Sbjct: 648 NKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQI 707

Query: 155 FSKIDLRSGYHQLRIRDSDIPKTAF 177
           F+ +DL SGYHQ+ +   D  KTAF
Sbjct: 708 FTTLDLHSGYHQIPMEPKDRYKTAF 732

[Close]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-21
Identity = 52/148 (35.14%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 33  VVREYPDVF----PDELPGLPPSREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQE 92
           + +E+ D+      ++LP   P + ++F +EL      +    Y + P +++ +  ++ +
Sbjct: 377 IYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQ 436

Query: 93  LLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQG 152
            L  G IR S +    PV+FV KK+G++R+ +DYK LNK    N Y LP I+ L  ++QG
Sbjct: 437 GLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQG 496

Query: 153 ATIFSKIDLRSGYHQLRIRDSDIPKTAF 177
           +TIF+K+DL+S YH +R+R  D  K AF
Sbjct: 497 STIFTKLDLKSAYHLIRVRKGDEHKLAF 522

[Close]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-21
Identity = 52/148 (35.14%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 33  VVREYPDVF----PDELPGLPPSREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQE 92
           + +E+ D+      ++LP   P + ++F +EL      +    Y + P +++ +  ++ +
Sbjct: 377 IYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQ 436

Query: 93  LLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQG 152
            L  G IR S +    PV+FV KK+G++R+ +DYK LNK    N Y LP I+ L  ++QG
Sbjct: 437 GLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQG 496

Query: 153 ATIFSKIDLRSGYHQLRIRDSDIPKTAF 177
           +TIF+K+DL+S YH +R+R  D  K AF
Sbjct: 497 STIFTKLDLKSAYHLIRVRKGDEHKLAF 522

[Close]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-21
Identity = 52/148 (35.14%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 33  VVREYPDVF----PDELPGLPPSREIDFAIELEPGTAPISRAPYRMAPAELKELKVQLQE 92
           + +E+ D+      ++LP   P + ++F +EL      +    Y + P +++ +  ++ +
Sbjct: 377 IYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQ 436

Query: 93  LLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCIDYKELNKVTVKNRYSLPRIDDLFDQLQG 152
            L  G IR S +    PV+FV KK+G++R+ +DYK LNK    N Y LP I+ L  ++QG
Sbjct: 437 GLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQG 496

Query: 153 ATIFSKIDLRSGYHQLRIRDSDIPKTAF 177
           +TIF+K+DL+S YH +R+R  D  K AF
Sbjct: 497 STIFTKLDLKSAYHLIRVRKGDEHKLAF 522

[Close]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL
Match: A0A5D3DDZ6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00080 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.4e-95
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL
Sbjct: 330 MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 389

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI
Sbjct: 390 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 449

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR
Sbjct: 450 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 508

[Close]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 413 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 472

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 473 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 532

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVT+KNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAFHSR
Sbjct: 533 DYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFHSR 591

[Close]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.2e-90
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 718

[Close]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.2e-90
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 718

[Close]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.2e-90
Identity = 169/179 (94.41%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MKASKLLSQGTWGILASVVDTRESEVSLSSEPVVREYPDVFPDELPGLPPSREIDFAIEL 60
           MKASKLLSQGTWGILASVVD RE EVSLSSEPVVREYPDVFPDELPGLPP RE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPRGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP GAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYKELNKVTVKNRYSLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTAFHSR 180
           DY+ELNKVTVKNRY LPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRD DIPKTAF SR
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSR 718

The following BLAST results are available for this feature:

BLAST of Cmc12g0320761 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035189.1	9.1e-95	100.00	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK21802.1 Tran...	[more]
KAA0058812.1	3.0e-90	94.41	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	1.5e-89	94.41	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	1.5e-89	94.41	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	1.5e-89	94.41	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]

BLAST of Cmc12g0320761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	6.0e-25	40.00	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.0e-25	40.00	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.0e-21	35.14	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.0e-21	35.14	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.0e-21	35.14	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDZ6	4.4e-95	100.00	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7USG7	1.5e-90	94.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5D3CQB5	7.2e-90	94.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	7.2e-90	94.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	7.2e-90	94.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]

BLAST of Cmc12g0320761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 109..177 e-value: 1.2E-7 score: 31.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 55..178 e-value: 2.3E-50 score: 172.8
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 26..167
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 26..167
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..179 e-value: 4.88677E-44 score: 142.349
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 134..161 e-value: 2.3E-50 score: 172.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0320761.1	Cmc12g0320761.1	mRNA