Cmc12g0319821 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0319821
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr12: 5527737 .. 5528662 (+)
RNA-Seq ExpressionCmc12g0319821
SyntenyCmc12g0319821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGTATTCAGATCTTTAGAGATCGTAAGAACAAAACACTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAACGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGACTTACTTTGTTTAAGGAACAGTGTCCTATGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGATTCTAAGATTTGATTCTTACAGGATACACAGACTCTGACTTTCAAACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTTTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGAGATCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGTAAGTATAACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCTCCTCACGACTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTTATCTAG

mRNA sequence

ATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGTATTCAGATCTTTAGAGATCGTAAGAACAAAACACTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAACGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGACTTACTTTGTTTAAGGAACAGTGTCCTATGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTTTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGAGATCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGTAAGTATAACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCTCCTCACGACTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTTATCTAG

Coding sequence (CDS)

ATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGTATTCAGATCTTTAGAGATCGTAAGAACAAAACACTAGCTTTGTCTCAAGCATCGTATATTGACAAAATAGTTGTTAAATATTCAACGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATGGACTTACTTTGTTTAAGGAACAGTGTCCTATGACACCTCAAGACGTTGAGGAAATGAGACATATCCCCTATGCATCAGCTGTTGGCAGCTTGATGTATGCGATGTTATGTACTAGACCTGACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGATTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTTTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGAGATCCCAGAAGCCACAAGCGTGGAAAGCATATTGAGCGTAAGTATAACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCTCCTCACGACTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTTATCTAG

Protein sequence

MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYMLVKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI
Homology
BLAST of Cmc12g0319821 vs. NCBI nr
Match: KAA0051845.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 505.8 bits (1301), Expect = 2.5e-139
Identity = 258/285 (90.53%), Postives = 260/285 (91.23%), Query Frame = 0

Query: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60
           MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH
Sbjct: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60

Query: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAH 120
           GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV RY  +     
Sbjct: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV-RYTDSD---- 120

Query: 121 WIAVKTILKYLRRTRDYMLVKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180
                      +  RD    KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA
Sbjct: 121 ----------FQTDRDSR--KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180

Query: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240
           AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV
Sbjct: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240

Query: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 286
           HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI
Sbjct: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 268

BLAST of Cmc12g0319821 vs. NCBI nr
Match: TYK21399.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.9e-137
Identity = 254/283 (89.75%), Postives = 256/283 (90.46%), Query Frame = 0

Query: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60
           MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH
Sbjct: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60

Query: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAH 120
           GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV RY  +     
Sbjct: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV-RYTDSD---- 120

Query: 121 WIAVKTILKYLRRTRDYMLVKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180
                      +  RD    KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA
Sbjct: 121 ----------FQTDRDSR--KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180

Query: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240
           AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV
Sbjct: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240

Query: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
           HRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 241 HRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 266

BLAST of Cmc12g0319821 vs. NCBI nr
Match: KAA0050671.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 496.9 bits (1278), Expect = 1.2e-136
Identity = 253/297 (85.19%), Postives = 256/297 (86.20%), Query Frame = 0

Query: 12  GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
           G      GIQIFRDRKNKTLALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 101 GEAQFVLGIQIFRDRKNKTLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 160

Query: 72  TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
           TPQDVEEMRHIPYAS VGSLMYAMLCTRPDICYAV IVSRYQSNPRLAHWIAVKTILKYL
Sbjct: 161 TPQDVEEMRHIPYASTVGSLMYAMLCTRPDICYAVRIVSRYQSNPRLAHWIAVKTILKYL 220

Query: 132 RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
           RRTRDYM V                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 221 RRTRDYMPVYGSKDLILTGYTDSDFQTDRDFRKSTSGSVFTLNGGAVVWRSIKQGCIADS 280

Query: 192 TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
           TMEAEYVAACEAAKEAVWLRK LIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 281 TMEAEYVAACEAAKEAVWLRKILIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 340

Query: 252 IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 286
           IERKY+LIREIVHRGDVIVTQIASTHN ADPFTK LT KVFEGHLESLGLRDMPH I
Sbjct: 341 IERKYHLIREIVHRGDVIVTQIASTHNGADPFTKPLTAKVFEGHLESLGLRDMPHLI 397

BLAST of Cmc12g0319821 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136
Identity = 252/295 (85.42%), Postives = 255/295 (86.44%), Query Frame = 0

Query: 12   GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
            G      GIQIFRDRKNK LALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 832  GEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 891

Query: 72   TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
            TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNP LAHW AVKTILKYL
Sbjct: 892  TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYL 951

Query: 132  RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
            RRTRDY LV                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 952  RRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADS 1011

Query: 192  TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
            TMEAEYVAACEAAKEAVWLR FLIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 1012 TMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 1071

Query: 252  IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
            IERKY+LIREIVHRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 1072 IERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 1126

BLAST of Cmc12g0319821 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136
Identity = 252/295 (85.42%), Postives = 255/295 (86.44%), Query Frame = 0

Query: 12   GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
            G      GIQIFRDRKNK LALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 1046 GEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 1105

Query: 72   TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
            TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNP LAHW AVKTILKYL
Sbjct: 1106 TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYL 1165

Query: 132  RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
            RRTRDY LV                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 1166 RRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADS 1225

Query: 192  TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
            TMEAEYVAACEAAKEAVWLR FLIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 1226 TMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 1285

Query: 252  IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
            IERKY+LIREIVHRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 1286 IERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 1340

BLAST of Cmc12g0319821 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.9e-52
Identity = 114/283 (40.28%), Postives = 167/283 (59.01%), Query Frame = 0

Query: 19   GIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPMTPQDVEE 78
            G++I R+R ++ L LSQ  YI++++ +++ +N+K    P    L L K+ CP T ++   
Sbjct: 1046 GMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGN 1105

Query: 79   MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYM 138
            M  +PY+SAVGSLMYAM+CTRPDI +AVG+VSR+  NP   HW AVK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 139  LV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 198
            L                        KS++G +FT +GGA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 199  AACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNL 258
            AA E  KE +WL++FL +L +     K    YCD+  A+  S++   H R KHI+ +Y+ 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 259  IREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGL 279
            IRE+V    + V +I++  N AD  TK++    FE   E +G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

BLAST of Cmc12g0319821 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-32
Identity = 93/291 (31.96%), Postives = 142/291 (48.80%), Query Frame = 0

Query: 19   GIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLP----FRHGLTLFKEQCPMTPQ 78
            GI+I  + +   + LSQ++Y+ KI+ K++ +N      P      + L    E C     
Sbjct: 1125 GIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC----- 1184

Query: 79   DVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRT 138
                  + P  S +G LMY MLCTRPD+  AV I+SRY S      W  +K +L+YL+ T
Sbjct: 1185 ------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGT 1244

Query: 139  RDYMLV--------------------------KSTSGSVFTL-NGGAVVWRSIKQGCIAD 198
             D  L+                          KST+G +F + +   + W + +Q  +A 
Sbjct: 1245 IDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAA 1304

Query: 199  STMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGK 258
            S+ EAEY+A  EA +EA+WL+  L  + +   +  PI  Y DN G ++ + +P  HKR K
Sbjct: 1305 SSTEAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAK 1364

Query: 259  HIERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGL 279
            HI+ KY+  RE V    + +  I + + +AD FTK L    F    + LGL
Sbjct: 1365 HIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

BLAST of Cmc12g0319821 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-23
Identity = 80/276 (28.99%), Postives = 117/276 (42.39%), Query Frame = 0

Query: 31   LALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPMTPQDVEEMRHIPYASAVGS 90
            L LSQ  Y   ++ + +   +K    P      L        P   E      Y   VGS
Sbjct: 1181 LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGS 1240

Query: 91   LMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYML----------- 150
            L Y +  TRPD+ YAV  +S+Y   P   HW A+K +L+YL  T D+ +           
Sbjct: 1241 LQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLH 1300

Query: 151  -------------VKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVW 210
                           ST+G +  L    + W S KQ  +  S+ EAEY +    + E  W
Sbjct: 1301 AYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQW 1360

Query: 211  LRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIVHRGDVI 270
            +   L +L +   +S P   YCDN GA     +P  H R KHI   Y+ IR  V  G + 
Sbjct: 1361 ICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALR 1420

Query: 271  VTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMP 283
            V  +++   +AD  TK L+   F+     +G+  +P
Sbjct: 1421 VVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

BLAST of Cmc12g0319821 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 58/133 (43.61%), Postives = 81/133 (60.90%), Query Frame = 0

Query: 79  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYM 138
           M+++PY SAVG++MY M+ TRPD+  AVG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 139 LV------------------------KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 188
           L                         +STSG +F LNGG V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

BLAST of Cmc12g0319821 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 68/223 (30.49%), Postives = 102/223 (45.74%), Query Frame = 0

Query: 84   YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYML---- 143
            Y   VGSL Y +  TRPDI YAV  +S++   P   H  A+K IL+YL  T ++ +    
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 144  --------------------VKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACE 203
                                  ST+G +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 204  AAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREI 263
             + E  W+   L +L +   +++P   YCDN GA     +P  H R KHI   Y+ IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 264  VHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMP 283
            V  G + V  +++   +AD  TK L+   F+     +G+  +P
Sbjct: 1425 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVP 1464

BLAST of Cmc12g0319821 vs. ExPASy TrEMBL
Match: A0A5A7UDR8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002740 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 258/285 (90.53%), Postives = 260/285 (91.23%), Query Frame = 0

Query: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60
           MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH
Sbjct: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60

Query: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAH 120
           GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV RY  +     
Sbjct: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV-RYTDSD---- 120

Query: 121 WIAVKTILKYLRRTRDYMLVKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180
                      +  RD    KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA
Sbjct: 121 ----------FQTDRDSR--KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180

Query: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240
           AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV
Sbjct: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240

Query: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 286
           HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI
Sbjct: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 268

BLAST of Cmc12g0319821 vs. ExPASy TrEMBL
Match: A0A5D3DDM9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00460 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.3e-137
Identity = 254/283 (89.75%), Postives = 256/283 (90.46%), Query Frame = 0

Query: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60
           MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH
Sbjct: 1   MASNPISNERFGRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRH 60

Query: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAH 120
           GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV RY  +     
Sbjct: 61  GLTLFKEQCPMTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIV-RYTDSD---- 120

Query: 121 WIAVKTILKYLRRTRDYMLVKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180
                      +  RD    KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA
Sbjct: 121 ----------FQTDRDSR--KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEA 180

Query: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240
           AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV
Sbjct: 181 AKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIREIV 240

Query: 241 HRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
           HRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 241 HRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 266

BLAST of Cmc12g0319821 vs. ExPASy TrEMBL
Match: A0A5A7UAT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001540 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.6e-137
Identity = 253/297 (85.19%), Postives = 256/297 (86.20%), Query Frame = 0

Query: 12  GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
           G      GIQIFRDRKNKTLALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 101 GEAQFVLGIQIFRDRKNKTLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 160

Query: 72  TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
           TPQDVEEMRHIPYAS VGSLMYAMLCTRPDICYAV IVSRYQSNPRLAHWIAVKTILKYL
Sbjct: 161 TPQDVEEMRHIPYASTVGSLMYAMLCTRPDICYAVRIVSRYQSNPRLAHWIAVKTILKYL 220

Query: 132 RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
           RRTRDYM V                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 221 RRTRDYMPVYGSKDLILTGYTDSDFQTDRDFRKSTSGSVFTLNGGAVVWRSIKQGCIADS 280

Query: 192 TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
           TMEAEYVAACEAAKEAVWLRK LIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 281 TMEAEYVAACEAAKEAVWLRKILIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 340

Query: 252 IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPHFI 286
           IERKY+LIREIVHRGDVIVTQIASTHN ADPFTK LT KVFEGHLESLGLRDMPH I
Sbjct: 341 IERKYHLIREIVHRGDVIVTQIASTHNGADPFTKPLTAKVFEGHLESLGLRDMPHLI 397

BLAST of Cmc12g0319821 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.4e-137
Identity = 252/295 (85.42%), Postives = 255/295 (86.44%), Query Frame = 0

Query: 12   GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
            G      GIQIFRDRKNK LALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 1047 GEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 1106

Query: 72   TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
            TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNP LAHW AVKTILKYL
Sbjct: 1107 TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYL 1166

Query: 132  RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
            RRTRDY LV                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 1167 RRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADS 1226

Query: 192  TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
            TMEAEYVAACEAAKEAVWLR FLIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 1227 TMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 1286

Query: 252  IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
            IERKY+LIREIVHRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 1287 IERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 1341

BLAST of Cmc12g0319821 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.4e-137
Identity = 252/295 (85.42%), Postives = 255/295 (86.44%), Query Frame = 0

Query: 12   GRGTICSGIQIFRDRKNKTLALSQASYIDKIVVKYSTQNSKRGLLPFRHGLTLFKEQCPM 71
            G      GIQIFRDRKNK LALSQASYIDKIVVKYS QNSKRGLLPFRHG+TL KEQCP 
Sbjct: 1047 GEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQCPK 1106

Query: 72   TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYL 131
            TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNP LAHW AVKTILKYL
Sbjct: 1107 TPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYL 1166

Query: 132  RRTRDYMLV-----------------------KSTSGSVFTLNGGAVVWRSIKQGCIADS 191
            RRTRDY LV                       KSTSGSVFTLNGGAVVWRSIKQGCIADS
Sbjct: 1167 RRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADS 1226

Query: 192  TMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKH 251
            TMEAEYVAACEAAKEAVWLR FLIDLEVVPNMSKPIT YCDNSGAVANSR+PRSHKRGKH
Sbjct: 1227 TMEAEYVAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKH 1286

Query: 252  IERKYNLIREIVHRGDVIVTQIASTHNVADPFTKLLTTKVFEGHLESLGLRDMPH 284
            IERKY+LIREIVHRGDVIVTQIASTHNVADPFTK LT KVFEGHLESLGLRDMPH
Sbjct: 1287 IERKYHLIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPH 1341

BLAST of Cmc12g0319821 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-17
Identity = 59/179 (32.96%), Postives = 88/179 (49.16%), Query Frame = 0

Query: 84  YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYMLV--- 143
           Y   +G LMY  + TR DI +AV  +S++   PRLAH  AV  IL Y++ T    L    
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 144 ---------------------KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACE 203
                                +ST+G    L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 204 AAKEAVWLRKFLIDLEVVPNMSKPITFYCDNSGAVANSRDPRSHKRGKHIERKYNLIRE 239
           A  E +WL +F  +L++   +SKP   +CDN+ A+  + +   H+R KHIE   + +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

BLAST of Cmc12g0319821 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06
Identity = 38/127 (29.92%), Postives = 56/127 (44.09%), Query Frame = 0

Query: 84  YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPRLAHWIAVKTILKYLRRTRDYMLV--- 143
           + S VG+L Y  L TRPDI YAV IV +    P LA +  +K +L+Y++ T  + L    
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 144 ---------------------KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACE 187
                                +ST+G    L    + W + +Q  ++ S+ E EY A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0051845.12.5e-13990.53gag/pol protein [Cucumis melo var. makuwa][more]
TYK21399.18.9e-13789.75gag/pol protein [Cucumis melo var. makuwa][more]
KAA0050671.11.2e-13685.19gag/pol protein [Cucumis melo var. makuwa][more]
TYJ97618.11.5e-13685.42gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.11.5e-13685.42gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109781.9e-5240.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.6e-3231.96Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT943.1e-2328.99Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P0CV721.2e-2243.61Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Q94HW21.1e-2030.49Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5A7UDR81.2e-13990.53Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00274... [more]
A0A5D3DDM94.3e-13789.75Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G0046... [more]
A0A5A7UAT65.6e-13785.19Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0015... [more]
A0A5A7SMH87.4e-13785.42Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ67.4e-13785.42Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.2e-1732.96cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.6e-0629.92DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 141..278
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 141..278
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 141..267
e-value: 3.11204E-56
score: 175.734

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0319821.1Cmc12g0319821.1mRNA