Cmc12g0319171 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0319171
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LOB domain-containing protein
Location	CMiso1.1chr12: 4735117 .. 4736688 (+)
RNA-Seq Expression	Cmc12g0319171
Synteny	Cmc12g0319171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCATCTCTTCTTCTTCATTTCGTCTCTATATATATTATATTCTTCATTCTTCTTCACAGCCAAAACCAACTTCATTTCTCTCTTTCTACCCAGTCTAAAATGGAGTCTAGGGAGGTAAAATCCAGCCCGACTTCAACACTCCTTTCTCAGTCCCCGTCGCCGTCTCCTTTACCGCCCCCGACTGTTCAGGCCCCCGTGGTGGTCAGTCCATGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGTACTTCCTTAATCCCAATTTTCTGTTTCTCTTTCAAATTTCGCGTGTTATCTTCTTGTTTCTAGGTTTAGAGATTATGGATTCCGTTCTGGAAATTGAAATTTGACCTTAAAAACTTAACGAAAAACCATCGAATTAGTTTGGGAATTCTGTTTGAGCAATTAAAGTCATCTCTGGCTGGAATGAAGTTAGTACTGAAATTGATCAAACGAAATCCTAATAATCTATGAAGAATTCACAATCCTATTCTGTTTAATTGCTTTTTCTTGATGAAAATTTGAAGCTATAATATTCAAGCATCATGTAAATTAGTAGAATCAAATGAAAGCACCCCAACTGTTTGATTAATGTCCTCACAGAACAACCCATCATATTAATCGCTTTATTGAATTCTTCAGGATCTTCCAGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCACCACCGATGTCATCATTGTCGCTCCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACTCCTCAAAACTACCAAGGGTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAAGAGAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTTAGTAGAACATATGAAAGTTAGGTAGTTGATTATCGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGTGAAGAAAAAGGACCGATGGTTACTAGAGACTAGATTAGTGCGAAATATATTATATCTTAGTATATATCTTCTTCTTCTTTTTTCTTTTTTTGGTTACCTACCATTAACTTCTTAACATTGATGTGTGAAGAAAAGGAACATATTTGTCAAAATGTTTTTACTCAAAGTGTGGTGTCAATTGTAGCAACCCCATTTATAAAATGACTAAAGATGTTTCCTTTCTTAGATCTAAGTTTAATCTACGTGTGCTAAAAAATCAAATATCTATTTTTAAAAGTATA

mRNA sequence

ATGACGTCATCTCTTCTTCTTCATTTCGTCTCTATATATATTATATTCTTCATTCTTCTTCACAGCCAAAACCAACTTCATTTCTCTCTTTCTACCCAGTCTAAAATGGAGTCTAGGGAGGTAAAATCCAGCCCGACTTCAACACTCCTTTCTCAGTCCCCGTCGCCGTCTCCTTTACCGCCCCCGACTGTTCAGGCCCCCGTGGTGGTCAGTCCATGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGATCTTCCAGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCACCACCGATGTCATCATTGTCGCTCCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACTCCTCAAAACTACCAAGGGTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAAGAGAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTTAGTAGAACATATGAAAGTTAGGTAGTTGATTATCGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGTGAAGAAAAAGGACCGATGGTTACTAGAGACTAGATTAGTGCGAAATATATTATATCTTAGTATATATCTTCTTCTTCTTTTTTCTTTTTTTGGTTACCTACCATTAACTTCTTAACATTGATGTGTGAAGAAAAGGAACATATTTGTCAAAATGTTTTTACTCAAAGTGTGGTGTCAATTGTAGCAACCCCATTTATAAAATGACTAAAGATGTTTCCTTTCTTAGATCTAAGTTTAATCTACGTGTGCTAAAAAATCAAATATCTATTTTTAAAAGTATA

Coding sequence (CDS)

ATGACGTCATCTCTTCTTCTTCATTTCGTCTCTATATATATTATATTCTTCATTCTTCTTCACAGCCAAAACCAACTTCATTTCTCTCTTTCTACCCAGTCTAAAATGGAGTCTAGGGAGGTAAAATCCAGCCCGACTTCAACACTCCTTTCTCAGTCCCCGTCGCCGTCTCCTTTACCGCCCCCGACTGTTCAGGCCCCCGTGGTGGTCAGTCCATGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGATCTTCCAGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCACCACCGATGTCATCATTGTCGCTCCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACTCCTCAAAACTACCAAGGGTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MTSSLLLHFVSIYIIFFILLHSQNQLHFSLSTQSKMESREVKSSPTSTLLSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQNYQGYTSLFEDSNIWDPLWT

Homology

[Close]

BLAST of Cmc12g0319171 vs. NCBI nr
Match: XP_008463550.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 1.9e-108
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 36  MESREVKSSPTSTLLSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 95
           MESREVKSSPTSTLLSQSPSPSP PPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP
Sbjct: 1   MESREVKSSPTSTLLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 60

Query: 96  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 155
           SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ
Sbjct: 61  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 120

Query: 156 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 215
           KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI
Sbjct: 121 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 180

Query: 216 ATPQNYQGYTSLFEDSNIWDPLWT 240
           ATPQ+YQGYTSLFEDSNIWDPLWT
Sbjct: 181 ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of Cmc12g0319171 vs. NCBI nr
Match: XP_004147299.1 (LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical protein Csa_013406 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 190/208 (91.35%), Postives = 196/208 (94.23%), Query Frame = 0


Query: 36  MESREVKSSPTSTLL---SQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPY 95
           MES + KSSPTSTLL   S SPSPSP PPPTVQA VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 96  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 155
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 156 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNN 215
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSS SLLP+HRSLDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180

Query: 216 FNI-ATPQNYQGYTSLFEDSNIWDPLWT 240
           FNI ATPQ+YQGYTSLF DSNIWDPLWT
Sbjct: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of Cmc12g0319171 vs. NCBI nr
Match: KAA0051926.1 (LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 354.8 bits (909), Expect = 6.0e-94
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 65  QAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 124
           +APVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 5   EAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 64

Query: 125 RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 184
           RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA
Sbjct: 65  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 124

Query: 185 LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQNYQGYTSLFEDSNIWDPLWT 240
           LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQ+YQGYTSLFEDSNIWDPLWT
Sbjct: 125 LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 179

[Close]

BLAST of Cmc12g0319171 vs. NCBI nr
Match: XP_038895012.1 (LOB domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 348.2 bits (892), Expect = 5.6e-92
Identity = 178/205 (86.83%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 36  MESREVKSSPTSTL-LSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 95
           ME  E KS   ST+ LSQSPS SP PPP++Q  VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECCEAKSGQASTIFLSQSPSSSPSPPPSIQTGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 96  PSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL 155
           PSDPLKFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEA+ARIRDPVYGCAGAICQL
Sbjct: 61  PSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEANARIRDPVYGCAGAICQL 120

Query: 156 QKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN 215
           QKQINELQAELAKTQAELVNIHC Q NLVALICKEL Q PPPMS    LPDHRSLDNNFN
Sbjct: 121 QKQINELQAELAKTQAELVNIHCRQANLVALICKELTQLPPPMSP---LPDHRSLDNNFN 180

Query: 216 IATPQNYQGYTSLFEDSNIWDPLWT 240
           IATPQ+YQGYTSLFEDSNIWDPLWT
Sbjct: 181 IATPQSYQGYTSLFEDSNIWDPLWT 202

[Close]

BLAST of Cmc12g0319171 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-90
Identity = 173/205 (84.39%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 36  MESREVKSSPTSTLL-SQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 95
           ME  E KS+ TST+L SQSPSPSP PPP++ A VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 96  PSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL 155
           PSDP KFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEASARIRDPVYGCAGAICQL
Sbjct: 61  PSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQL 120

Query: 156 QKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN 215
           QKQINELQAELAKTQAELVN+HCHQ +LVALICKELAQTPPP+      PDHRSLDNNFN
Sbjct: 121 QKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP----PDHRSLDNNFN 180

Query: 216 IATPQNYQGYTSLFEDSNIWDPLWT 240
           IATPQ+YQ YT   EDSNIW+PLWT
Sbjct: 181 IATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 115/211 (54.50%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 46  TSTLLSQSPSPSPLPPPT----VQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKF 105
           T+ + S SP+ SP PPP+     Q PVV+SPCAACKILRRRCA+KCVLAPYFPP+DP KF
Sbjct: 25  TTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKF 84

Query: 106 TIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINEL 165
           TIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGCAGAI  LQ+Q++EL
Sbjct: 85  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSEL 144

Query: 166 QAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN-----IA 225
           QA+LAKTQ ELV +   +++L+ LI   + QT   +S         S +++F      I+
Sbjct: 145 QAQLAKTQVELVGMQLQRSSLLELI-YNMEQT--KLSVQEQGQQKMSFESSFESGDEFIS 204

Query: 226 TPQNYQGYTSLFEDSN--------IWDPLWT 240
           +P          ED+N         WDPLWT
Sbjct: 205 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-51
Identity = 111/208 (53.37%), Postives = 140/208 (67.31%), Query Frame = 0


Query: 36  MESREVKSSPTSTLLSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 95
           MES+   S  T+ ++S S S    PPP++   VV+SPCAACKILRRRCAE+CVLAPYFPP
Sbjct: 1   MESKSDASVATTPIISSSSS----PPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPP 60

Query: 96  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 155
           +DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI  LQ
Sbjct: 61  TDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQ 120

Query: 156 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 215
           +Q++ELQA+LAK Q E+VN+   ++NL+ LI                  D +      N+
Sbjct: 121 RQVSELQAQLAKAQVEMVNMQFQRSNLLELIYN---------------MDQQQKQEQDNM 180

Query: 216 ATPQNYQGYTSLFEDSNI----WDPLWT 240
           +   N  G+     ++N     WDPLWT
Sbjct: 181 SFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 3.5e-36
Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 0


Query: 71  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 130
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 131 SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKEL 190
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE             ++C ++
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAE-------------ILCIQM 126

Query: 191 AQTPPPMSS---LSLLPDHRSL---DNNFNIATPQN 221
              P   S    L L  DH++L   +NN N     N
Sbjct: 127 QNEPTLQSHHQVLELDQDHKALLLNNNNINNCNTNN 149

[Close]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-35
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 71  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 130
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 131 SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQT 181
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-32
Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 56  PSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 115
           P   PP T+     ++PCAACK+LRRRCA++C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 116 LLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELV 174
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

[Close]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL
Match: A0A1S3CK12 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 9.3e-109
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 36  MESREVKSSPTSTLLSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 95
           MESREVKSSPTSTLLSQSPSPSP PPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP
Sbjct: 1   MESREVKSSPTSTLLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 60

Query: 96  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 155
           SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ
Sbjct: 61  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 120

Query: 156 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 215
           KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI
Sbjct: 121 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 180

Query: 216 ATPQNYQGYTSLFEDSNIWDPLWT 240
           ATPQ+YQGYTSLFEDSNIWDPLWT
Sbjct: 181 ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL
Match: A0A5D3CPB0 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00420 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.9e-94
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 65  QAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 124
           +APVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 5   EAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 64

Query: 125 RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 184
           RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA
Sbjct: 65  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 124

Query: 185 LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQNYQGYTSLFEDSNIWDPLWT 240
           LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQ+YQGYTSLFEDSNIWDPLWT
Sbjct: 125 LICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 179

[Close]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL
Match: A0A6J1DVT7 (LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111024535 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.5e-90
Identity = 173/205 (84.39%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 36  MESREVKSSPTSTLL-SQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 95
           ME  E KS+ TST+L SQSPSPSP PPP++ A VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 96  PSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL 155
           PSDP KFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEASARIRDPVYGCAGAICQL
Sbjct: 61  PSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQL 120

Query: 156 QKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN 215
           QKQINELQAELAKTQAELVN+HCHQ +LVALICKELAQTPPP+      PDHRSLDNNFN
Sbjct: 121 QKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP----PDHRSLDNNFN 180

Query: 216 IATPQNYQGYTSLFEDSNIWDPLWT 240
           IATPQ+YQ YT   EDSNIW+PLWT
Sbjct: 181 IATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL
Match: A0A6J1I3T6 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469412 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.5e-82
Identity = 167/202 (82.67%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 40  EVKSSPTSTLL-SQSPSPSPL-PPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSD 99
           + KSSPTST+  SQSPS SPL PPP+VQA +VVSPCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPSD 61

Query: 100 PLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 159
           PLKFTIAHRIFGASNIIKLL DLP+SQR DAVSSLVYEASARIRDPVYGCAGAI QLQKQ
Sbjct: 62  PLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQ 121

Query: 160 INELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIAT 219
           INELQAELAKTQAELVNIH HQTNLVALICKELAQTPPP+S     PDH +LDNN N A 
Sbjct: 122 INELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSP----PDHHALDNNLNTAI 181

Query: 220 PQNYQGYTSLFEDSNIWDPLWT 240
           PQ+   YT+LFEDS+IW+PLWT
Sbjct: 182 PQS---YTNLFEDSSIWEPLWT 196

[Close]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL
Match: A0A6J1HPR9 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464931 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.4e-82
Identity = 166/202 (82.18%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 40  EVKSSPTSTLL-SQSPSPSPLPPP-TVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSD 99
           + KSSPTST+  SQSPS SPLPPP +VQA +V SPCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSD 61

Query: 100 PLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 159
           PLKFTIAHRIFGASNIIKLL DLP+SQR DAVSSLVYEASARIRDPVYGCAGAI QLQKQ
Sbjct: 62  PLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQ 121

Query: 160 INELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIAT 219
           INELQAELAKTQAEL+NIH HQTNLVALICKELAQTPPP+S L    DH +LDNN N AT
Sbjct: 122 INELQAELAKTQAELLNIHSHQTNLVALICKELAQTPPPVSPL----DHHTLDNNLNTAT 181

Query: 220 PQNYQGYTSLFEDSNIWDPLWT 240
           PQ+   YT+LFEDS+IW+PLWT
Sbjct: 182 PQS---YTNLFEDSSIWEPLWT 196

[Close]

BLAST of Cmc12g0319171 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-52
Identity = 115/211 (54.50%), Postives = 145/211 (68.72%), Query Frame = 0


Query: 46  TSTLLSQSPSPSPLPPPT----VQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKF 105
           T+ + S SP+ SP PPP+     Q PVV+SPCAACKILRRRCA+KCVLAPYFPP+DP KF
Sbjct: 25  TTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKF 84

Query: 106 TIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINEL 165
           TIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGCAGAI  LQ+Q++EL
Sbjct: 85  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSEL 144

Query: 166 QAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN-----IA 225
           QA+LAKTQ ELV +   +++L+ LI   + QT   +S         S +++F      I+
Sbjct: 145 QAQLAKTQVELVGMQLQRSSLLELI-YNMEQT--KLSVQEQGQQKMSFESSFESGDEFIS 204

Query: 226 TPQNYQGYTSLFEDSN--------IWDPLWT 240
           +P          ED+N         WDPLWT
Sbjct: 205 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Cmc12g0319171 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-52
Identity = 111/208 (53.37%), Postives = 140/208 (67.31%), Query Frame = 0


Query: 36  MESREVKSSPTSTLLSQSPSPSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 95
           MES+   S  T+ ++S S S    PPP++   VV+SPCAACKILRRRCAE+CVLAPYFPP
Sbjct: 1   MESKSDASVATTPIISSSSS----PPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPP 60

Query: 96  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 155
           +DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI  LQ
Sbjct: 61  TDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQ 120

Query: 156 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 215
           +Q++ELQA+LAK Q E+VN+   ++NL+ LI                  D +      N+
Sbjct: 121 RQVSELQAQLAKAQVEMVNMQFQRSNLLELIYN---------------MDQQQKQEQDNM 180

Query: 216 ATPQNYQGYTSLFEDSNI----WDPLWT 240
           +   N  G+     ++N     WDPLWT
Sbjct: 181 SFESNDLGFLEDKSNTNSSMLWWDPLWT 189

[Close]

BLAST of Cmc12g0319171 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-37
Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 0


Query: 71  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 130
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 131 SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKEL 190
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE             ++C ++
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAE-------------ILCIQM 126

Query: 191 AQTPPPMSS---LSLLPDHRSL---DNNFNIATPQN 221
              P   S    L L  DH++L   +NN N     N
Sbjct: 127 QNEPTLQSHHQVLELDQDHKALLLNNNNINNCNTNN 149

[Close]

BLAST of Cmc12g0319171 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 71  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 130
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 131 SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQT 181
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of Cmc12g0319171 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-33
Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 56  PSPLPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 115
           P   PP T+     ++PCAACK+LRRRCA++C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 116 LLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELV 174
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

The following BLAST results are available for this feature:

BLAST of Cmc12g0319171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463550.1	1.9e-108	99.02	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
XP_004147299.1	1.8e-98	91.35	LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical pro...	[more]
KAA0051926.1	6.0e-94	98.86	LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB ...	[more]
XP_038895012.1	5.6e-92	86.83	LOB domain-containing protein 1-like [Benincasa hispida]	[more]
XP_022157927.1	5.3e-90	84.39	LOB domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of Cmc12g0319171 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK08	2.2e-51	54.50	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9LQR0	6.5e-51	53.37	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q8LBW3	3.5e-36	50.64	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	1.7e-35	63.64	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8L5T5	1.8e-32	55.08	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of Cmc12g0319171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK12	9.3e-109	99.02	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=...	[more]
A0A5D3CPB0	2.9e-94	98.86	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DVT7	2.5e-90	84.39	LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1I3T6	1.5e-82	82.67	LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HPR9	4.4e-82	82.18	LOB domain-containing protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cmc12g0319171 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28500.1	1.6e-52	54.50	LOB domain-containing protein 11	[more]
AT1G07900.1	4.6e-52	53.37	LOB domain-containing protein 1	[more]
AT2G30130.1	2.5e-37	50.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.2e-36	63.64	LOB domain-containing protein 4	[more]
AT2G40470.1	1.3e-33	55.08	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 60..238
None	No IPR available	PANTHER	PTHR31301:SF137	LOB DOMAIN-CONTAINING PROTEIN 1	coord: 60..238
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 72..169 e-value: 6.0E-40 score: 135.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 71..172 score: 26.426443

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0319171.1	Cmc12g0319171.1	mRNA