Cmc12g0319121 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0319121
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-Pol
LocationCMiso1.1chr12: 4692156 .. 4693004 (+)
RNA-Seq ExpressionCmc12g0319121
SyntenyCmc12g0319121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAGAAACAAGAAGCAGATGATAACACTGTAAATGAAAGCTCAGAGACAACAATAGTACATATGGAAAAATCTATAGATGGCTCTTTTGAAGCTGAGCCAGTACACGAGATCCAAGAACCATTTGAGCAACAAGTACTAGAAATTCATCGATCTGGTCGGACAACAAGACCACCAGGTTGGCAATCTGAGTATATTATGGAGAGCAATGTTGCATACTACTATCTTCTAACCGAAGATGGAGAGCCATTAACTCTCCAAGAGGCATTGACCATTTTCGATGCTGCTCAATGGATAACAGTAATGCAGGAAGATATAGAATCTCTTCATAAGAACAAGACTTGGGACCTTGTAACGTTACCACAAAGAAGAAAGCCCATTGGAAACAAGTGGATGTATAAGATAAAGGGCAATAATGACGGCCAAGTAGAGCAGTATCGTACAAGATTGGTAGTAAAGGGATATGCTAAAAAAGAAGGTATTGACTTCAATGAGATATTTTCTCTAGTAATTCGACTTACTACTGTTAGAATAGTTTTAGCAATGTGTGCTACATTTGACTTACACTTGGAGTATTTAGATGTAAAAATTGCATTTCTCCATGAAGATCTTGAAGAAGAAATATATATGCTTCAACCAAAAAGCTTTGAAGTAAAGGGAAAAGAGAAATTGATTTTTAGGTTAAAAAAGTATCTGTACGGTTTCAAACATGCATCGAGGTTTTGGTACAAGAGATTTGATTCCTTCATTTTGAGCCTTGGATACAACAGACTTAATGAAGATCCTTGTGCATATTTTAAGAGGTTTAGAGAAAAAGACTTATTGTCTTATTGTTGTATGTAG

mRNA sequence

ATGGAAGATAAGAAACAAGAAGCAGATGATAACACTGTAAATGAAAGCTCAGAGACAACAATAGTACATATGGAAAAATCTATAGATGGCTCTTTTGAAGCTGAGCCAGTACACGAGATCCAAGAACCATTTGAGCAACAAGTACTAGAAATTCATCGATCTGGTCGGACAACAAGACCACCAGGTTGGCAATCTGAGTATATTATGGAGAGCAATGTTGCATACTACTATCTTCTAACCGAAGATGGAGAGCCATTAACTCTCCAAGAGGCATTGACCATTTTCGATGCTGCTCAATGGATAACAGTAATGCAGGAAGATATAGAATCTCTTCATAAGAACAAGACTTGGGACCTTGTAACGTTACCACAAAGAAGAAAGCCCATTGGAAACAAGTGGATGTATAAGATAAAGGGCAATAATGACGGCCAAGTAGAGCAGTATCGTACAAGATTGGTAGTAAAGGGATATGCTAAAAAAGAAGGTATTGACTTCAATGAGATATTTTCTCTAGTAATTCGACTTACTACTGTTAGAATAGTTTTAGCAATGTGTGCTACATTTGACTTACACTTGGAGTATTTAGATGTAAAAATTGCATTTCTCCATGAAGATCTTGAAGAAGAAATATATATGCTTCAACCAAAAAGCTTTGAAGTAAAGGGAAAAGAGAAATTGATTTTTAGGTTAAAAAAGTATCTGTACGGTTTCAAACATGCATCGAGGTTTTGGTACAAGAGATTTGATTCCTTCATTTTGAGCCTTGGATACAACAGACTTAATGAAGATCCTTGTGCATATTTTAAGAGGTTTAGAGAAAAAGACTTATTGTCTTATTGTTGTATGTAG

Coding sequence (CDS)

ATGGAAGATAAGAAACAAGAAGCAGATGATAACACTGTAAATGAAAGCTCAGAGACAACAATAGTACATATGGAAAAATCTATAGATGGCTCTTTTGAAGCTGAGCCAGTACACGAGATCCAAGAACCATTTGAGCAACAAGTACTAGAAATTCATCGATCTGGTCGGACAACAAGACCACCAGGTTGGCAATCTGAGTATATTATGGAGAGCAATGTTGCATACTACTATCTTCTAACCGAAGATGGAGAGCCATTAACTCTCCAAGAGGCATTGACCATTTTCGATGCTGCTCAATGGATAACAGTAATGCAGGAAGATATAGAATCTCTTCATAAGAACAAGACTTGGGACCTTGTAACGTTACCACAAAGAAGAAAGCCCATTGGAAACAAGTGGATGTATAAGATAAAGGGCAATAATGACGGCCAAGTAGAGCAGTATCGTACAAGATTGGTAGTAAAGGGATATGCTAAAAAAGAAGGTATTGACTTCAATGAGATATTTTCTCTAGTAATTCGACTTACTACTGTTAGAATAGTTTTAGCAATGTGTGCTACATTTGACTTACACTTGGAGTATTTAGATGTAAAAATTGCATTTCTCCATGAAGATCTTGAAGAAGAAATATATATGCTTCAACCAAAAAGCTTTGAAGTAAAGGGAAAAGAGAAATTGATTTTTAGGTTAAAAAAGTATCTGTACGGTTTCAAACATGCATCGAGGTTTTGGTACAAGAGATTTGATTCCTTCATTTTGAGCCTTGGATACAACAGACTTAATGAAGATCCTTGTGCATATTTTAAGAGGTTTAGAGAAAAAGACTTATTGTCTTATTGTTGTATGTAG

Protein sequence

MEDKKQEADDNTVNESSETTIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRPPGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHASRFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLLSYCCM
Homology
BLAST of Cmc12g0319121 vs. NCBI nr
Match: AFB73911.1 (polyprotein [Citrus sinensis])

HSP 1 Score: 352.4 bits (903), Expect = 3.5e-93
Identity = 180/276 (65.22%), Postives = 211/276 (76.45%), Query Frame = 0

Query: 4   KKQEADDNTVNESSETTIVHMEKSIDG--SFEAEPVHEIQEPFEQQVLEIHRSGRTTRPP 63
           ++++ DD TV E SET  V++E + +   S EA P HE QEP E +  E+ RS R  RPP
Sbjct: 710 QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPP 769

Query: 64  GWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVT 123
            W SEY+ E NVA Y LLTEDGEP T  EAL   D A W+T MQE+IE+LHKNKTW+LV 
Sbjct: 770 TWHSEYVTEINVA-YCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVP 829

Query: 124 LPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIV 183
           LP+ RK IGNKW+YKIK + + QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTVRIV
Sbjct: 830 LPRGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIV 889

Query: 184 LAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHAS 243
           LAMCATFDLHLE LDVK AFLH +LEEEIYMLQP+ F   GKE L+ RL K LYG K A 
Sbjct: 890 LAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAP 949

Query: 244 RFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
           R+WYKRFDSFI+SLGYNRL+ D CAY+KRF + D +
Sbjct: 950 RYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFI 984

BLAST of Cmc12g0319121 vs. NCBI nr
Match: AFB73912.1 (polyprotein [Citrus sinensis])

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-92
Identity = 180/276 (65.22%), Postives = 209/276 (75.72%), Query Frame = 0

Query: 4   KKQEADDNTVNESSETTIVHMEKSIDG--SFEAEPVHEIQEPFEQQVLEIHRSGRTTRPP 63
           ++++ DD TV E SET  V++E + +   S EA P HE QEP E +  E+ RS R  RPP
Sbjct: 710 QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPP 769

Query: 64  GWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVT 123
            W SEY+ E NVA Y LLTEDGEP T  EAL   D A W+T MQE+IE+LHKNKTW+LV 
Sbjct: 770 TWHSEYVTEINVA-YCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVP 829

Query: 124 LPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIV 183
           LP  RK IGNKW+YKIK + + QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTVRIV
Sbjct: 830 LPHGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIV 889

Query: 184 LAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHAS 243
           LAMCATFDLHLE LDVK AFLH +LEEEIYMLQP+ F   GKE L+ RL K LYG K A 
Sbjct: 890 LAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAP 949

Query: 244 RFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
           R WYKRFDSFI+SLGYNRL+ D CAY+KRF + D +
Sbjct: 950 RCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFI 984

BLAST of Cmc12g0319121 vs. NCBI nr
Match: TYK12233.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.7e-92
Identity = 179/220 (81.36%), Postives = 184/220 (83.64%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP 60
           MEDKKQEADDNTVNESSET IVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP
Sbjct: 18  MEDKKQEADDNTVNESSETAIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP 77

Query: 61  PGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLV 120
           PGWQSEYIMESN+AYYYLLTEDGEPLTLQEALTIFDAAQWI +MQE+IESLHKNKTWDL+
Sbjct: 78  PGWQSEYIMESNIAYYYLLTEDGEPLTLQEALTIFDAAQWIKLMQEEIESLHKNKTWDLI 137

Query: 121 TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRI 180
           TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKE                   
Sbjct: 138 TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKE------------------- 197

Query: 181 VLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEV 221
                          DVKIAFLHEDLEEEIYMLQPKSFE+
Sbjct: 198 ---------------DVKIAFLHEDLEEEIYMLQPKSFEI 203

BLAST of Cmc12g0319121 vs. NCBI nr
Match: KAE8677858.1 (cytochrome P450 71A9-like [Hibiscus syriacus])

HSP 1 Score: 345.5 bits (885), Expect = 4.3e-91
Identity = 177/279 (63.44%), Postives = 208/279 (74.55%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSID--GSFEAEPVHEIQEPFEQQVLEIHRSGRTT 60
           +EDK Q  +D+   E SETT +H+EK  +   S EAEP H+ QEP   +     +S R  
Sbjct: 612 VEDKLQRKEDDDNAEKSETTQIHVEKEFEEGDSSEAEPAHDEQEPESSEAPTTRQSDRVR 671

Query: 61  RPPGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWD 120
           R P W S+Y++E N+A Y LLTEDGEP T QEA+   DA+ W+  MQE+IE+ HKN TWD
Sbjct: 672 RRPNWHSDYVIEDNIA-YCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEAFHKNNTWD 731

Query: 121 LVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTV 180
           LV LPQ RKPIGNKW++KIK N D QVE+YR RLVV GYA+KEGIDFNEIFS V+RLTTV
Sbjct: 732 LVPLPQGRKPIGNKWVFKIKRNCDDQVERYRARLVVNGYAQKEGIDFNEIFSPVVRLTTV 791

Query: 181 RIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFK 240
           R+VLAMCAT DLHLE LDVKIAFLH +LEEEIYMLQP+ FE K K+ L+ RL K LYG K
Sbjct: 792 RVVLAMCATLDLHLEQLDVKIAFLHGNLEEEIYMLQPEGFEEKEKKNLVCRLNKSLYGLK 851

Query: 241 HASRFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
            A R WYKRFDSFI+ LGYNRLN DPCAYFKR  + D +
Sbjct: 852 QAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSDDNDFV 889

BLAST of Cmc12g0319121 vs. NCBI nr
Match: KAE8731597.1 (hypothetical protein F3Y22_tig00002793pilonHSYRG00074 [Hibiscus syriacus])

HSP 1 Score: 345.1 bits (884), Expect = 5.6e-91
Identity = 176/279 (63.08%), Postives = 209/279 (74.91%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSID--GSFEAEPVHEIQEPFEQQVLEIHRSGRTT 60
           +EDK Q  +D+   E SETT +H+EK  +   S EAEP H+ QEP   +     +S R  
Sbjct: 634 VEDKLQRKEDDDSAEKSETTQIHVEKEFEEGDSSEAEPTHDEQEPESSEAPTTRQSDRVR 693

Query: 61  RPPGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWD 120
           R P W S+YI+E N+A Y LLTEDGEP T QEA+   DA+ W+  MQE+IE+LHKN TWD
Sbjct: 694 RRPNWHSDYIIEGNIA-YCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWD 753

Query: 121 LVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTV 180
           LV LPQ RKPIGNKW++KIK N D QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTV
Sbjct: 754 LVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTV 813

Query: 181 RIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFK 240
           R+VLAMCATF+LHLE LDVK  FLH +LEE+IYMLQP+ FE   K+ L+ RL K LYG K
Sbjct: 814 RVVLAMCATFNLHLEQLDVKTTFLHGNLEEDIYMLQPEGFEEDKKKNLVCRLNKSLYGLK 873

Query: 241 HASRFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
            A+R WYKRFDSFI+ LGYNRLN DPCAYFKR  + D +
Sbjct: 874 QATRCWYKRFDSFIMCLGYNRLNADPCAYFKRSGDNDFV 911

BLAST of Cmc12g0319121 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.8e-53
Identity = 115/268 (42.91%), Postives = 173/268 (64.55%), Query Frame = 0

Query: 10   DNTVNESSETTIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRPPGWQSEYIM 69
            ++T +E SE      E    G    E V E++ P + +  E H+  R +  P  +S    
Sbjct: 741  ESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGE--EQHQPLRRSERPRVESRRYP 800

Query: 70   ESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVTLPQRRKPI 129
             +    Y L+++D EP +L+E L+  +  Q +  MQE++ESL KN T+ LV LP+ ++P+
Sbjct: 801  STE---YVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPL 860

Query: 130  GNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIVLAMCATFD 189
              KW++K+K + D ++ +Y+ RLVVKG+ +K+GIDF+EIFS V+++T++R +L++ A+ D
Sbjct: 861  KCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLD 920

Query: 190  LHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHASRFWYKRFD 249
            L +E LDVK AFLH DLEEEIYM QP+ FEV GK+ ++ +L K LYG K A R WY +FD
Sbjct: 921  LEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFD 980

Query: 250  SFILSLGYNRLNEDPCAYFKRFREKDLL 278
            SF+ S  Y +   DPC YFKRF E + +
Sbjct: 981  SFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

BLAST of Cmc12g0319121 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-26
Identity = 71/193 (36.79%), Postives = 105/193 (54.40%), Query Frame = 0

Query: 68   IMESNVAYYYL--LTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVTLPQR 127
            I + N  Y Y   L  + EP T   A+      +W   M  +I +   N TWDLV  P  
Sbjct: 920  IRKPNQKYSYATSLAANSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPP 979

Query: 128  RKPI-GNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIVLAM 187
               I G +W++  K N+DG + +Y+ RLV KGY ++ G+D+ E FS VI+ T++RIVL +
Sbjct: 980  SVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1039

Query: 188  CATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHASRFW 247
                   +  LDV  AFL   L +E+YM QP  F  K +   + RL+K +YG K A R W
Sbjct: 1040 AVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAW 1099

Query: 248  YKRFDSFILSLGY 258
            Y    +++L++G+
Sbjct: 1100 YVELRTYLLTVGF 1109

BLAST of Cmc12g0319121 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 0

Query: 79   LTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVTLPQRRKPI-GNKWMYKI 138
            L  + EP T  +AL      +W   M  +I +   N TWDLV  P     I G +W++  
Sbjct: 950  LAAESEPRTAIQAL---KDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTK 1009

Query: 139  KGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIVLAMCATFDLHLEYLDV 198
            K N+DG + +Y+ RLV KGY ++ G+D+ E FS VI+ T++RIVL +       +  LDV
Sbjct: 1010 KYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1069

Query: 199  KIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHASRFWYKRFDSFILSLGY 258
              AFL   L +++YM QP  F  K +   + +L+K LYG K A R WY    +++L++G+
Sbjct: 1070 NNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGF 1126

BLAST of Cmc12g0319121 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-21
Identity = 77/274 (28.10%), Postives = 134/274 (48.91%), Query Frame = 0

Query: 2    EDKKQEADDNTVNESSETTIVHMEKSIDGSFEAEPVHE--IQEPFEQQVLEI--HRSGRT 61
            E KK++ DD+ +NES  +   +  +    S  AE + E  I  P +   +EI   RS R 
Sbjct: 806  ESKKRKRDDH-LNESKGSGNPNESRE---SETAEHLKEIGIDNPTKNDGIEIINRRSERL 865

Query: 62   TRPPGWQSEYIMESNVAYYYLLTE----DGEPLTLQEALTIFDAAQWITVMQEDIESLHK 121
               P  Q  Y  E N     +L      +  P +  E     D + W   +  ++ +   
Sbjct: 866  KTKP--QISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKI 925

Query: 122  NKTWDLVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVI 181
            N TW +   P+ +  + ++W++ +K N  G   +Y+ RLV +G+ +K  ID+ E F+ V 
Sbjct: 926  NNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVA 985

Query: 182  RLTTVRIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKY 241
            R+++ R +L++   ++L +  +DVK AFL+  L+EEIYM  P+          + +L K 
Sbjct: 986  RISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN--VCKLNKA 1045

Query: 242  LYGFKHASRFWYKRFDSFILSLGYNRLNEDPCAY 268
            +YG K A+R W++ F+  +    +   + D C Y
Sbjct: 1046 IYGLKQAARCWFEVFEQALKECEFVNSSVDRCIY 1071

BLAST of Cmc12g0319121 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.8e-14
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 100 WITVMQEDIESLHKNKTWDLVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAK 159
           W   MQE++++L +NKTW LV  P  +  +G KW++K K ++DG +++ + RLV KG+ +
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 160 KEGIDFNEIFSLVIRLTTVRIVL 183
           +EGI F E +S V+R  T+R +L
Sbjct: 100 EEGIYFVETYSPVVRTATIRTIL 122

BLAST of Cmc12g0319121 vs. ExPASy TrEMBL
Match: H6U1E9 (Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs1 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.7e-93
Identity = 180/276 (65.22%), Postives = 211/276 (76.45%), Query Frame = 0

Query: 4   KKQEADDNTVNESSETTIVHMEKSIDG--SFEAEPVHEIQEPFEQQVLEIHRSGRTTRPP 63
           ++++ DD TV E SET  V++E + +   S EA P HE QEP E +  E+ RS R  RPP
Sbjct: 710 QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPP 769

Query: 64  GWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVT 123
            W SEY+ E NVA Y LLTEDGEP T  EAL   D A W+T MQE+IE+LHKNKTW+LV 
Sbjct: 770 TWHSEYVTEINVA-YCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVP 829

Query: 124 LPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIV 183
           LP+ RK IGNKW+YKIK + + QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTVRIV
Sbjct: 830 LPRGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIV 889

Query: 184 LAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHAS 243
           LAMCATFDLHLE LDVK AFLH +LEEEIYMLQP+ F   GKE L+ RL K LYG K A 
Sbjct: 890 LAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAP 949

Query: 244 RFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
           R+WYKRFDSFI+SLGYNRL+ D CAY+KRF + D +
Sbjct: 950 RYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFI 984

BLAST of Cmc12g0319121 vs. ExPASy TrEMBL
Match: H6U1F0 (Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs2 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 5.0e-93
Identity = 180/276 (65.22%), Postives = 209/276 (75.72%), Query Frame = 0

Query: 4   KKQEADDNTVNESSETTIVHMEKSIDG--SFEAEPVHEIQEPFEQQVLEIHRSGRTTRPP 63
           ++++ DD TV E SET  V++E + +   S EA P HE QEP E +  E+ RS R  RPP
Sbjct: 710 QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPP 769

Query: 64  GWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVT 123
            W SEY+ E NVA Y LLTEDGEP T  EAL   D A W+T MQE+IE+LHKNKTW+LV 
Sbjct: 770 TWHSEYVTEINVA-YCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVP 829

Query: 124 LPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIV 183
           LP  RK IGNKW+YKIK + + QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTVRIV
Sbjct: 830 LPHGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIV 889

Query: 184 LAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFKHAS 243
           LAMCATFDLHLE LDVK AFLH +LEEEIYMLQP+ F   GKE L+ RL K LYG K A 
Sbjct: 890 LAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAP 949

Query: 244 RFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
           R WYKRFDSFI+SLGYNRL+ D CAY+KRF + D +
Sbjct: 950 RCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFI 984

BLAST of Cmc12g0319121 vs. ExPASy TrEMBL
Match: A0A5D3CK06 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00380 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 8.4e-93
Identity = 179/220 (81.36%), Postives = 184/220 (83.64%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP 60
           MEDKKQEADDNTVNESSET IVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP
Sbjct: 18  MEDKKQEADDNTVNESSETAIVHMEKSIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRP 77

Query: 61  PGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLV 120
           PGWQSEYIMESN+AYYYLLTEDGEPLTLQEALTIFDAAQWI +MQE+IESLHKNKTWDL+
Sbjct: 78  PGWQSEYIMESNIAYYYLLTEDGEPLTLQEALTIFDAAQWIKLMQEEIESLHKNKTWDLI 137

Query: 121 TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRI 180
           TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKE                   
Sbjct: 138 TLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKE------------------- 197

Query: 181 VLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEV 221
                          DVKIAFLHEDLEEEIYMLQPKSFE+
Sbjct: 198 ---------------DVKIAFLHEDLEEEIYMLQPKSFEI 203

BLAST of Cmc12g0319121 vs. ExPASy TrEMBL
Match: A0A6A2XQI6 (Cytochrome P450 71A9-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111493pilonHSYRG00053 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 2.1e-91
Identity = 177/279 (63.44%), Postives = 208/279 (74.55%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSID--GSFEAEPVHEIQEPFEQQVLEIHRSGRTT 60
           +EDK Q  +D+   E SETT +H+EK  +   S EAEP H+ QEP   +     +S R  
Sbjct: 612 VEDKLQRKEDDDNAEKSETTQIHVEKEFEEGDSSEAEPAHDEQEPESSEAPTTRQSDRVR 671

Query: 61  RPPGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWD 120
           R P W S+Y++E N+A Y LLTEDGEP T QEA+   DA+ W+  MQE+IE+ HKN TWD
Sbjct: 672 RRPNWHSDYVIEDNIA-YCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEAFHKNNTWD 731

Query: 121 LVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTV 180
           LV LPQ RKPIGNKW++KIK N D QVE+YR RLVV GYA+KEGIDFNEIFS V+RLTTV
Sbjct: 732 LVPLPQGRKPIGNKWVFKIKRNCDDQVERYRARLVVNGYAQKEGIDFNEIFSPVVRLTTV 791

Query: 181 RIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFK 240
           R+VLAMCAT DLHLE LDVKIAFLH +LEEEIYMLQP+ FE K K+ L+ RL K LYG K
Sbjct: 792 RVVLAMCATLDLHLEQLDVKIAFLHGNLEEEIYMLQPEGFEEKEKKNLVCRLNKSLYGLK 851

Query: 241 HASRFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
            A R WYKRFDSFI+ LGYNRLN DPCAYFKR  + D +
Sbjct: 852 QAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSDDNDFV 889

BLAST of Cmc12g0319121 vs. ExPASy TrEMBL
Match: A0A6A3CSP3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002793pilonHSYRG00074 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.7e-91
Identity = 176/279 (63.08%), Postives = 209/279 (74.91%), Query Frame = 0

Query: 1   MEDKKQEADDNTVNESSETTIVHMEKSID--GSFEAEPVHEIQEPFEQQVLEIHRSGRTT 60
           +EDK Q  +D+   E SETT +H+EK  +   S EAEP H+ QEP   +     +S R  
Sbjct: 634 VEDKLQRKEDDDSAEKSETTQIHVEKEFEEGDSSEAEPTHDEQEPESSEAPTTRQSDRVR 693

Query: 61  RPPGWQSEYIMESNVAYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWD 120
           R P W S+YI+E N+A Y LLTEDGEP T QEA+   DA+ W+  MQE+IE+LHKN TWD
Sbjct: 694 RRPNWHSDYIIEGNIA-YCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWD 753

Query: 121 LVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTV 180
           LV LPQ RKPIGNKW++KIK N D QVE+YR RLVVKGYA+KEGIDFNEIFS V+RLTTV
Sbjct: 754 LVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTV 813

Query: 181 RIVLAMCATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKLIFRLKKYLYGFK 240
           R+VLAMCATF+LHLE LDVK  FLH +LEE+IYMLQP+ FE   K+ L+ RL K LYG K
Sbjct: 814 RVVLAMCATFNLHLEQLDVKTTFLHGNLEEDIYMLQPEGFEEDKKKNLVCRLNKSLYGLK 873

Query: 241 HASRFWYKRFDSFILSLGYNRLNEDPCAYFKRFREKDLL 278
            A+R WYKRFDSFI+ LGYNRLN DPCAYFKR  + D +
Sbjct: 874 QATRCWYKRFDSFIMCLGYNRLNADPCAYFKRSGDNDFV 911

BLAST of Cmc12g0319121 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-37
Identity = 92/268 (34.33%), Postives = 141/268 (52.61%), Query Frame = 0

Query: 27  SIDGSFEAEPVHEIQEPFEQQVLEIHRSGRTTRPPGWQSEYIMESNV------------- 86
           SID    A   +++ EP       +H S R TR P +  +Y   S               
Sbjct: 13  SIDIMPSANIQNDVPEP------SVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSY 72

Query: 87  --------AYYYLLTEDGEPLTLQEALTIFDAAQWITVMQEDIESLHKNKTWDLVTLPQR 146
                   ++   + +  EP T  EA    +   W   M ++I ++    TW++ TLP  
Sbjct: 73  EKVSPLYHSFLVCIAKAKEPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTLPPN 132

Query: 147 RKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAKKEGIDFNEIFSLVIRLTTVRIVLAMC 206
           +KPIG KW+YKIK N+DG +E+Y+ RLV KGY ++EGIDF E FS V +LT+V+++LA+ 
Sbjct: 133 KKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAIS 192

Query: 207 ATFDLHLEYLDVKIAFLHEDLEEEIYMLQPKSFEVKGKEKL----IFRLKKYLYGFKHAS 266
           A ++  L  LD+  AFL+ DL+EEIYM  P  +  +  + L    +  LKK +YG K AS
Sbjct: 193 AIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQAS 252

Query: 267 RFWYKRFDSFILSLGYNRLNEDPCAYFK 270
           R W+ +F   ++  G+ + + D   + K
Sbjct: 253 RQWFLKFSVTLIGFGFVQSHSDHTYFLK 271

BLAST of Cmc12g0319121 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-15
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 100 WITVMQEDIESLHKNKTWDLVTLPQRRKPIGNKWMYKIKGNNDGQVEQYRTRLVVKGYAK 159
           W   MQE++++L +NKTW LV  P  +  +G KW++K K ++DG +++ + RLV KG+ +
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 160 KEGIDFNEIFSLVIRLTTVRIVL 183
           +EGI F E +S V+R  T+R +L
Sbjct: 100 EEGIYFVETYSPVVRTATIRTIL 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AFB73911.13.5e-9365.22polyprotein [Citrus sinensis][more]
AFB73912.11.0e-9265.22polyprotein [Citrus sinensis][more]
TYK12233.11.7e-9281.36polyprotein [Cucumis melo var. makuwa][more]
KAE8677858.14.3e-9163.44cytochrome P450 71A9-like [Hibiscus syriacus][more]
KAE8731597.15.6e-9163.08hypothetical protein F3Y22_tig00002793pilonHSYRG00074 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
P109784.8e-5342.91Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT945.0e-2636.79Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW26.6e-2637.22Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P041462.9e-2128.10Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925209.8e-1442.17Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
H6U1E91.7e-9365.22Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs1 PE=4 SV=1[more]
H6U1F05.0e-9365.22Polyprotein OS=Citrus sinensis OX=2711 GN=Tcs2 PE=4 SV=1[more]
A0A5D3CK068.4e-9381.36Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00380 PE... [more]
A0A6A2XQI62.1e-9163.44Cytochrome P450 71A9-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111493pil... [more]
A0A6A3CSP32.7e-9163.08Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002793pilon... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.3e-3734.33cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.17.0e-1542.17Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 114..276
e-value: 4.8E-44
score: 150.8
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 83..271

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0319121.1Cmc12g0319121.1mRNA