Cmc12g0316791 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0316791
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionmetallothionein-like protein LSC54
LocationCMiso1.1chr12: 1817162 .. 1819082 (-)
RNA-Seq ExpressionCmc12g0316791
SyntenyCmc12g0316791
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATATAAATTGTGTACCTCAAAACCTCTATAAATAGAGAAGAAGAATCAGACTCCAAATCAAAACACAGCAAAAATTCAACAAATTTAAGCTTTGAAAAAGATAAGATTATTTTTTAGTTTGTGAAAGAGAGAAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGTCTCATCTCTTCTACAATTTTTATATTTACCAATACTCTTTTTTTTTTAAAAAAAAATTTTATACAAATTATTAATTGCCAATGTACACAATAATTTTTCATTAATTAAATGCTTTTGTGTTTTAATCTATGCAGGACCATCTCAGGGGCCATGATTCTCAAGCAGTAAGTAATAAGTTTTTTTTAGTGTTGTTTTAGAATTAAGTATATTGTTAAATATGAATAAAAAAAACTCAAACTAATTATTATATAACTCAATTTTTTCATTAGTGAATTATTGATTATAATCCTACTGCAACAAAACTGAAATTTAACGATGCAAAATAAGTGTCATAAACGGTTTTCGTGACACATATTTTGCGTCTTTGAAATCCCTGTCAAGATAGAACATTTGATGACACATCCAAAAAAGTTTCGTTATTATTGCATACACAACATTGGATTAATTAACGTCATCAATGATCACTTTGTCCTCATATTTACTATCTATCGCTATTAACTGAATGTCGATACAAAAAAATTGTCATCGCTGAGGTCTAAATTGGTTAATTACTTTAACGTTTTTCATTAATGACGATAATTTTTTTGTATCATCAATTGATTTTTAGTAACATTTTTGTTATTGCCTACATATACACTCTCATAACACTTATATTGTGTAATACATTTTTCTGCTATAAAAGAATCCAATTACAGATTGTCAAACATGCATTTTCCCTGTTATTTTTCATATAATTTAAAGGAGTACCGATATATTTGCAAATTGATCTATATATTGATAATGAAAAGTTAAATTACATTGTCGAATCAATATTTGGTAATGCATATCGACACATATCCTTAAACAAAAAATGGTTTTACTAGAATTCATTACCTAAAGCATTACAATGAAATACATATTGACACATATTCTTAACAAAAAAAAAGTAAAAACTAACATATCTATTGCGACATGTTTCTATGGTCCACGGATTCTTCGAAAATCTACAAAATCATCGAAAATGAATGCTAATTAAGCACATGCCAAATGACAAGCAGACCGTTCTTTTTTAAAACACTTATACATATAACAAAACAAAACTAGTACTTTAGGATAGAGTCCTAAAGAGAATTCTAAATTATATTGATTAATGTTTAAAAGTTTCAAATAGAATTATTAGTTTGAAACTTCAAGTTGATTAACTCCTCGAAATTAAACGATTATGTATATTTATATATATTTATATATATATATGAAAGTTATTATATTGAATAAAATAACAATTTGAAAAATGGTTTGATTGAGAATGCAGAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAGTGAGCCATGAGAAAGATGGATAAAACCCCTAAACACAACAAAAGCTTCTTCATCCAATAAATTGATGAATACGATCAATCTACAAACTTTGTTTCTTTTTTCTTCTTTATCCTTCCTTGTTTGATGAAAATGAAATATTGTAAATTGGCTTTGAAACTCCAAGTTCATATGGATTTGGGTTTTCTATGGCTTCTTGAAATTTAGTGTGAACTATGTACTATAGCTTTGTTGTGTGTTGGGGGAACTTAGGGTTGATAATATTCATCAAAAGTTTTAAATTTGTGTTTGAATTTGTGTTTAATATGGATATTTGGTTTTGAGTATACTCTTCGTATTTATAACTCTTTACTCCTCCTAGATCATCATCTAATT

mRNA sequence

TCAATATAAATTGTGTACCTCAAAACCTCTATAAATAGAGAAGAAGAATCAGACTCCAAATCAAAACACAGCAAAAATTCAACAAATTTAAGCTTTGAAAAAGATAAGATTATTTTTTAGTTTGTGAAAGAGAGAAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGACCATCTCAGGGGCCATGATTCTCAAGCAAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAGTGAGCCATGAGAAAGATGGATAAAACCCCTAAACACAACAAAAGCTTCTTCATCCAATAAATTGATGAATACGATCAATCTACAAACTTTGTTTCTTTTTTCTTCTTTATCCTTCCTTGTTTGATGAAAATGAAATATTGTAAATTGGCTTTGAAACTCCAAGTTCATATGGATTTGGGTTTTCTATGGCTTCTTGAAATTTAGTGTGAACTATGTACTATAGCTTTGTTGTGTGTTGGGGGAACTTAGGGTTGATAATATTCATCAAAAGTTTTAAATTTGTGTTTGAATTTGTGTTTAATATGGATATTTGGTTTTGAGTATACTCTTCGTATTTATAACTCTTTACTCCTCCTAGATCATCATCTAATT

Coding sequence (CDS)

ATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGACCATCTCAGGGGCCATGATTCTCAAGCAAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAGTGA

Protein sequence

MASGCKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSCK
Homology
BLAST of Cmc12g0316791 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 6.2e-14
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1  MASGCKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSCK 50
          M SGCKCGD+CSCGDSCNCQSG+I+ A IL + GCSCG SCSCDPC+CK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

BLAST of Cmc12g0316791 vs. NCBI nr
Match: AAC27529.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 7  CGDNCSCGDSCNCQSGTISGAMILKQ-SGCSCGDSCSCDPCSC 49
          CGDNCSCGD+C+C SG     +  K+  GC+CGD C+CDPC+C
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

BLAST of Cmc12g0316791 vs. NCBI nr
Match: AAC27530.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 7  CGDNCSCGDSCNCQSG-TISGAMILKQSGCSCGDSCSCDPCSC 49
          CGDNC+CGD+C+C SG   + +   K  GC CGD CSCDPC+C
Sbjct: 3  CGDNCNCGDNCSCGSGCNCNRSYAKKDDGCKCGDDCSCDPCTC 45

BLAST of Cmc12g0316791 vs. NCBI nr
Match: KNA09450.1 (hypothetical protein SOVF_153520 [Spinacia oleracea])

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 5  CKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSC 49
          C CGDNCSCGD CNC        M+  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCSCGDDCNCN-------MMTSRTECGCGDDCSCDPCTC 42

BLAST of Cmc12g0316791 vs. NCBI nr
Match: KMT05247.1 (hypothetical protein BVRB_7g173880 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 5  CKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSC 49
          C CGDNCSCGD CNC         +  ++ C CGD CSCDPC+C
Sbjct: 6  CSCGDNCSCGDDCNCN-------RMYSRTECGCGDDCSCDPCTC 42

BLAST of Cmc12g0316791 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-05
Identity = 27/74 (36.49%), Postives = 34/74 (45.95%), Query Frame = 0

Query: 3  SGCKCGDNCSCGDSCNCQSGT------------------------ISGA---MILKQSGC 50
          SGC CG +C+CGDSC C   +                          GA      K+ GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEGGC 61

BLAST of Cmc12g0316791 vs. ExPASy Swiss-Prot
Match: P43399 (Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.5e-05
Identity = 26/74 (35.14%), Postives = 32/74 (43.24%), Query Frame = 0

Query: 3  SGCKCGDNCSCGDSCNC---------------------------QSGTISGAMILKQSGC 50
          SGC CG +C+CGDSC C                           Q       +  + SGC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSGC 61

BLAST of Cmc12g0316791 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-05
Identity = 27/74 (36.49%), Postives = 34/74 (45.95%), Query Frame = 0

Query: 3  SGCKCGDNCSCGDSCNCQSGT------------------------ISGAMILKQS---GC 50
          SGC CG +C+CGDSC C   +                          GA +   S   GC
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGGC 61

BLAST of Cmc12g0316791 vs. ExPASy Swiss-Prot
Match: Q41669 (Metallothionein-like protein 1A OS=Vicia faba OX=3906 GN=MT1A PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-04
Identity = 26/76 (34.21%), Postives = 33/76 (43.42%), Query Frame = 0

Query: 3  SGCKCGDNCSCGDSCNCQSGT---------------------------ISGA---MILKQ 49
          SGC CG +C+CGDSC C   +                             GA   +  K+
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETKETKETVVLGFGPAKIHFDGAEMSVASKE 61

BLAST of Cmc12g0316791 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1  MASGCKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSCK 50
          M SGCKCGD+CSCGDSCNCQSG+I+ A IL + GCSCG SCSCDPC+CK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

BLAST of Cmc12g0316791 vs. ExPASy TrEMBL
Match: O81528 (Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 7  CGDNCSCGDSCNCQSGTISGAMILKQ-SGCSCGDSCSCDPCSC 49
          CGDNCSCGD+C+C SG     +  K+  GC+CGD C+CDPC+C
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

BLAST of Cmc12g0316791 vs. ExPASy TrEMBL
Match: A0A0K9QQ95 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_153520 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 5  CKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSC 49
          C CGDNCSCGD CNC        M+  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCSCGDDCNCN-------MMTSRTECGCGDDCSCDPCTC 42

BLAST of Cmc12g0316791 vs. ExPASy TrEMBL
Match: O81529 (Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 7  CGDNCSCGDSCNCQSG-TISGAMILKQSGCSCGDSCSCDPCSC 49
          CGDNC+CGD+C+C SG   + +   K  GC CGD CSCDPC+C
Sbjct: 3  CGDNCNCGDNCSCGSGCNCNRSYAKKDDGCKCGDDCSCDPCTC 45

BLAST of Cmc12g0316791 vs. ExPASy TrEMBL
Match: J9PHD6 (Metallothionein OS=Phytolacca acinosa OX=3528 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 5  CKCGDNCSCGDSCNCQSGTISGAMILKQSGCSCGDSCSCDPCSC 49
          C CGDNCSCG  CNC       A  ++  GC+CGD C+CDPC+C
Sbjct: 6  CGCGDNCSCGSGCNCNR---FYAKTVEGEGCNCGDDCTCDPCTC 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022997994.16.2e-1477.55metallothionein-like protein LSC54 [Cucurbita maxima][more]
AAC27529.13.1e-0558.14metallothionein [Mesembryanthemum crystallinum][more]
AAC27530.14.1e-0558.14metallothionein [Mesembryanthemum crystallinum][more]
KNA09450.14.1e-0556.82hypothetical protein SOVF_153520 [Spinacia oleracea][more]
KMT05247.11.2e-0454.55hypothetical protein BVRB_7g173880 [Beta vulgaris subsp. vulgaris][more]
Match NameE-valueIdentityDescription
Q416701.4e-0536.49Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1[more]
P433995.5e-0535.14Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1[more]
P208309.4e-0536.49Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1[more]
Q416692.7e-0434.21Metallothionein-like protein 1A OS=Vicia faba OX=3906 GN=MT1A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1KD423.0e-1477.55metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P... [more]
O815281.5e-0558.14Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1[more]
A0A0K9QQ952.0e-0556.82Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_153520 PE=4 SV=1[more]
O815292.0e-0558.14Metallothionein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1[more]
J9PHD62.2e-0454.55Metallothionein OS=Phytolacca acinosa OX=3528 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0316791.1Cmc12g0316791.1mRNA