Cmc12g0315541 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0315541
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein PSY1-like
LocationCMiso1.1chr12: 699460 .. 701787 (+)
RNA-Seq ExpressionCmc12g0315541
SyntenyCmc12g0315541
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTGCTTCTCCTCCTCCTCACTACTGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGTAAGAACGGAACCCTTTCCTAGTTCTTCTCTTCTTCACCTTTGTTCATTTTCTTTCCTTTAATCTAAATTTGTCATTTAACATAGGGGTATAAATGGGTAATGGGGTTGAGGGACATTTTCAATCCAACCTATATTTTCAACTTAGTTGGTTGACAATCCAAATAATCCGAATTATATTCCCAATCCAACCCAACTCAACCCTTAATGCTTGGGTTTAGTTAGTATTTCCTTTTTCATTCCTAATTTTTAGGATTTAAAATTGTTGCACGACCACGATAAATACTCACATCCAAAGATTCAAACATCCATGAATTCAAAGTTTCAAATATTTACAAAAGTTTAACATTCCAAACATTATTGTAATATTAAATAAATAATAAAATATCTATAATATAAATATAAATAAATATAGATATATTATTATTTCGGGTTGGGTTGACACAAATTTTCCAACTCCTAACCCAAGACTTAATTTGACAAAAATCAAAATTTTCAACCCAACTCATATAATATGAGTTAGATAGTATTGGTTGTCAGATTATTTGGATTATTCTTACACACTTAATATAACTTTTTTTTAATTTGATAGTTTAACGTAGTATATGAGACATCGATATCTATTCCTATTTCTTGAATATAGAACTTTTGCATTCTTGGTTTATAAAATAATGGTTGAACTTGTCGGATTTTTTTTGTTCCAATGCATACAACTGATTAAAGATGTCTGGCCTCTCAATTTAATTTTTACGTAGAATCAGGGAAAATAAAATTCTGGTTATTTTGCATTTCGAATTTCAGAGTTTCATTAAGTCAAAATTTATTCTTTTTACTTTAAATTGATTTTATATTTAATCAATCAAAGTTAATAATTTTCTAGATGGTCATCAAATAATAATAAATTTTGTAAAAACATAAAATAATATTATACGTGTTTGAATTCTAAAGATTTATAAAAAACCTAAGTAGCAAACAATATTTTTATATTTGGAAAAAGCAACATCGTGATTAAAATCAACAAAAAGTACTATTATTCTTAAGATTTACCGATAGTATTAAAAAAAAAAAATTATTCGAAAGTACATGAAATAAAACTCGAAATTAAATTAAAATAGTATGTATTTTAGGTATTATATTAAAAATTTAACATGGTGTCAAAATAGAAGGTTTTGAGTAATTGTCATGTCACATTCTTTCGTTTGTACATATATGATAATTAACCTCTAAGGTCTTAATGTTTAATTTTCAAGCTTTATAAACTATTGAACTTGTTTTATGGATTTATAGGTAATTTAATATGATTAATTATAAAGTTTTATGGTTAATTAAAAATGTATATATGTAGGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGTCAGTTTCACCGTAGACATATCTATAATTGATGAATGGAAAATATACTCTTCAACTGTTTCGAGTCTCGTCACTTATTCTATATAAATATAGATTATTACTCGAGTGATGAAACTAATTGGTATATCATTGAATGCATGAGATGAATTTTTTTATTTATTTGGTTTCTTAATGGTTTAGAGTACAAGTCTCTAACTAAATTATTATTATTTAGATTATTAGTGACTTTATCTATTTAAATAAATGTATAAAAACTATGTGGTGAAGTTTTTTCGTACAAAAGAAAACTATACATTCTTGTAAATATAATATTTTTATACTTAATTGTACTCGAAATAAAACTATGAAAGTTTTTAACACATTCAAAGAGGTCGAAGTTGTTGATATTTCATATATACTTACGATTATAGCAAACCACCTAATAAAATTTGTTGTTATAATTATTATTTATTGATTTTTTTTTTTTTTTGTAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAATTAATACAAGAAATAGAAATTTTTCACACACTATATGATATTTTTGCATATCCCTTTAGTTTTATATATATCAAATTTAAAAGATTATATATTGTAACTATTTACTAATTAACGTTAAGGTAATTAATTTTCTATTATTATCA

mRNA sequence

CTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTGCTTCTCCTCCTCCTCACTACTGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAATTAATACAAGAAATAGAAATTTTTCACACACTATATGATATTTTTGCATATCCCTTTAGTTTTATATATATCAAATTTAAAAGATTATATATTGTAACTATTTACTAATTAACGTTAAGGTAATTAATTTTCTATTATTATCA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTGCTTCTCCTCCTCCTCACTACTGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAA

Protein sequence

MASSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG
Homology
BLAST of Cmc12g0315541 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 2  ASSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 61
          +SSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH
Sbjct: 3  SSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 62

Query: 62 RHDPHHPLTVNKGNKKELDG 82
          RHDPHHPLTVNKGNKKELDG
Sbjct: 63 RHDPHHPLTVNKGNKKELDG 82

BLAST of Cmc12g0315541 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.5e-30
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MASSSS--PRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 82
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of Cmc12g0315541 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 8  RLSFYFSFLLLLLLTTAMVA-SAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPH 67
          R S YFS L  LL T A+VA S AR+ P  PI+S ER+DE MIGL+DYGDARANHRH+PH
Sbjct: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERHDE-MIGLRDYGDARANHRHEPH 63

Query: 68 HPLTVNKGNKKELD 81
          HPL V +G KKELD
Sbjct: 64 HPLGV-EGYKKELD 75

BLAST of Cmc12g0315541 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MASSSSPRLSFYFSFLLLLLLTTAMVAS-AARHAPPIPISSNERNDEGMIGLQDYGDARA 60
          MAS S    S YFS L  LL T A+VA+  AR+ P  PISS ER+DE MIGL+DYGDARA
Sbjct: 1  MASQS----SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDE-MIGLRDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNKKELD 81
          NHRH+PHHPL V +G KKELD
Sbjct: 61 NHRHEPHHPLGV-EGYKKELD 75

BLAST of Cmc12g0315541 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 49/101 (48.51%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 8   RLSFYFSFLLLLLLTTAMVASAARHAPPIP---------ISSNER--------------- 67
           RLS YFS L+LLL T ++V+SAARHAP            +  +ER               
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 68  ---NDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82
                E MIGL DYGD  ANH+HDPHHPL V KGN KELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

BLAST of Cmc12g0315541 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 2  ASSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 61
          +SSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH
Sbjct: 3  SSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANH 62

Query: 62 RHDPHHPLTVNKGNKKELDG 82
          RHDPHHPLTVNKGNKKELDG
Sbjct: 63 RHDPHHPLTVNKGNKKELDG 82

BLAST of Cmc12g0315541 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MASSSS--PRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 82
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of Cmc12g0315541 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MASSSSPRLSFYFSFLLLLLLTTAMVAS-AARHAPPIPISSNERNDEGMIGLQDYGDARA 60
          MAS S    S YFS L  LL T A+VA+  AR+ P  PISS ER+DE MIGL+DYGDARA
Sbjct: 1  MASQS----SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDE-MIGLRDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNKKELD 81
          NHRH+PHHPL V +G KKELD
Sbjct: 61 NHRHEPHHPLGV-EGYKKELD 75

BLAST of Cmc12g0315541 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 49/101 (48.51%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 8   RLSFYFSFLLLLLLTTAMVASAARHAPPIP---------ISSNER--------------- 67
           RLS YFS L+LLL T ++V+SAARHAP            +  +ER               
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 68  ---NDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82
                E MIGL DYGD  ANH+HDPHHPL V KGN KELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008457363.11.3e-3598.75PREDICTED: protein PSY1-like [Cucumis melo][more]
KGN65819.13.5e-3086.75hypothetical protein Csa_023229 [Cucumis sativus][more]
KAG6607316.11.3e-1367.57hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022998316.13.0e-1365.43uncharacterized protein LOC111492989 [Cucurbita maxima][more]
XP_022150920.12.8e-1148.51uncharacterized protein LOC111018956 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C5B46.1e-3698.75protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1[more]
A0A0A0LXN01.7e-3086.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1[more]
A0A6J1K9X51.5e-1365.43uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989... [more]
A0A6J1D9T41.4e-1148.51uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0315541.1Cmc12g0315541.1mRNA