Cmc12g0314861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0314861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	U2 small nuclear ribonucleoprotein B
Location	CMiso1.1chr12: 253749 .. 257456 (-)
RNA-Seq Expression	Cmc12g0314861
Synteny	Cmc12g0314861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCAAGCTCCTGGACACCAAAACTGGGAGTACGATCTTGGCGCTCTGAAGACATTTGCTTCTAGGGCTCCAAGCTACCTTCCTTCTTCACATTCGGAAAACCACATTTCTGTCCATTACTCCCTGATTCTCTGTAATCCGAAGGCCCTGAACCCTAACAACCATGTTGTCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGGTGATTCACTCTTAGCTTTTCGCTTAACCTTAATCTATTTCTTCCGTAAATGTGTTTTCTTCTGTTCGTTAAGTAGACAACTTAGTATAATTGAAGCGATCTTCGGCACATTTTATCTTTACCATTTCGCATTTGGTTTCCCCGGGAAGGGGGGAAGGGGTATTTGGCAAAGTTGGGCTTGTTTTTTTTGACAGTATTTAACATTTCTTACGACGCCTTCAGTAATGACTCGAGAAGATTAAACTATTTTAGTTGAAATTTGGGTTTTAGGGTGATAGAGCTGGTAGCTTGAAAGGTTAGTTAAAACTTGGGATTTTGGTTTGCTTAGTGCCTATTTGATAACCATTTTGGTTTTTTATTTCGTTGTTTTTGAAAATGAAGCTTATAAACATGTTCAATTGCTAATTTTTTTAATTTGTAATCTACCATTTACCAATGTTTAGTTTTTAAAAATGTTTTTGTTTTTGGAATTGGCTAAGAATTCAACTATTGTATTTAACTATGTTAACCGATACGAGAAATTAAGAGAAAATAATTTTAATTTTCAGAAACCAAAAGCCAAAACAGATTAGTTACCAAGCTGACCATAATGTTCAGTTTTGACAATATTACACCACATGTGGAGGGGGTGGTTTGAATCCAAGTCCTCATAGTGTTCAGATTTTGATGGTATACTAATTTTCTCCCCCTTGGACAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTCGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCCTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGGTTGGTCTTTAGCTGATCACATTTTCTGAAACTGCTTTTCATAGTCATTTTGTGCCTTTCATCTATGGACTGTTCTAGTGCACTTTGATTTTTTCCGAGTAACTGTGGGTAGGTTTCTTGTAGACGGGATTGGATTCTAATTGTGCTTCAATGAGTCTTATGTCGAGATGGTCAAGTGAAAGTCTATAAACAATCACGACCAATGTTGTGCCAGTTTAGCTGCTTTGCATGCCCGAAATAACGACCTAATTTTATTGGATATGTGGGTTTTTATATTGGCCATGTGCTGGTTTCGAACGTTTTGAGATCTTTCTTTGCAACTTCTATACATTGGACAAATCTTTCTTCAATGAATCCATTTATCACGAATTACAAGCTTATGTGCGGCTTAGAATGTTGTAACTTGGACACAAGGAGATCATTTCTCCTTGTTCTAATGTGGTTATAATAAAGGGCTTAGTGATAATTATATCAATTCATAGTGGGACATCTACTTGGGATAGTACCCTTCAAGTCTTTTGGGACACCCAAATTTTGTAGGATCCAATGGGTTATCCTATGAGATTAAGTTGAGATATAGCAAGCTGACTCGAAACACTTACGCCTATAAAAGAAAGAAGGAAAAAAAAAAAAACAAGCATGACTTGGAGACATATCTATGATTGTTTTTGGAACAAACAAGTATTAGTATTACTTTTTTGCTCTTAATTTCAGTTATCTTTTTGTTTCATCTCGATGTTTGTGTACCATATTCATTTGTACCGGTTATTCTGATGTTTAAAAAGAAGATGACTTCTGTTGATCATCTCAAAAATATAAATATGACTTTTGTTTCTTTTCCAGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAACCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATCGTAACAGATAGACAATATATTTTCACTTTGGTGTCTTGAATTTTTGTCATAACGTCTCATTTTCTTATTGCATTGCTTTTGAAACATCTCAAGGGTTTTAAACTGGTTTATGCTCCTGACTATCTTTTAATTTGCTTATCCAGCTGAAAAAAAGCGGCGTGCTGAAGAAGCACACCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGTAAGTTTCTTTTCATTCTTATTTTGTTTTATTTTTATAAAAACTTCATTTTTATTTTCCTTCTTCATATGAGTTGTATGGTATTAATTGTTTTCACCAGAAGTGGTCCCAAACATGAATTGTGAGTCTTTTTCGGACAACGTGGTTCTCTGGTTAATTGTGTTTTTCTTCACATTTGTTAGAAATTCATTGATGTCCATTCCAATTAGATTTCCCCTTAGTGCCTCTGAGATCAGGTAATGTCAATCAACATTTTTCCATAACTATTTTTACTAAGAAATCCTCTTTGTTGTGTGTCATTTCTGCAGGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTCGCAAAGAAGTAACTCAACCTTTGTTCTACTGTTACTAGTTTGGAATGTGTAGCAGGTTTATGTTAATGTCACCGCACATAACATGAGTCGTGGGTTTTTACGTAAAGTTCAGATATCCTTCCCCTCCTTCAAAGAGAAAGAAAGAAGGAAAACATTGGGAGGTAGCCCACTGGAAAAAAAGGGACTTAATGAGTTTTGCGGGCTATGCTAATTCCAGTTTCCAGGGGTAGCAAGAAAATAGATTTATGTTAGGTCGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACCTTTTTTCTTTAAATGTGTTCATGTATTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTAGGAGACGATTTTGATTGACTTTTGCATAAATATTTCGTCCTCGACAATCAAGTGTTCATTTCTGTCAGTCCCAGGGACAGTGCTGCTTGGTGCGTGTGTTTTCTTCCATTGGTCGATTATAAGCAAAATTTGACCCAAACTTAGTTTCAAAGTTGTGTCTTTTACTGGATCAACTGTGTAGCTATTGCTTGTTTTTTCTTATTATTATTCAATGTGGGGCCATTTTATATTTTATTTCATAGGGATCAGTGATTCCATCAACTTCTGACTGCTGACCTTCACAGAACTTCAGTGCTAAAACTGACATTGCGTCTCTCTTTGGGTATCTTCATTCACATACATCGACCACGTCGCCCGGAAGTTCCCTTGTCTTCTTCTTCTTCCTGCCTATTTTCATGAAATATTGAAAGATATCTAGGATATGAATATATATATTAATTAGGTGAAAAAATTATGTTTGTTTTCTTGTGTCTTATTATTTTGTTGCAAGCTCAT

mRNA sequence

TTAGCAAGCTCCTGGACACCAAAACTGGGAGTACGATCTTGGCGCTCTGAAGACATTTGCTTCTAGGGCTCCAAGCTACCTTCCTTCTTCACATTCGGAAAACCACATTTCTGTCCATTACTCCCTGATTCTCTGTAATCCGAAGGCCCTGAACCCTAACAACCATGTTGTCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTCGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCCTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAACCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATCCTGAAAAAAAGCGGCGTGCTGAAGAAGCACACCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTCGCAAAGAAGTAACTCAACCTTTGTTCTACTGTTACTAGTTTGGAATGTGTAGCAGGTTTATGTTAATGTCACCGCACATAACATGAGTCGTGGGTTTTTACGTAAAGTTCAGATATCCTTCCCCTCCTTCAAAGAGAAAGAAAGAAGGAAAACATTGGGAGGTAGCCCACTGGAAAAAAAGGGACTTAATGAGTTTTGCGGGCTATGCTAATTCCAGTTTCCAGGGGTAGCAAGAAAATAGATTTATGTTAGGTCGTCAAAAAGGAAACAGAAAGAACTAATCAAAGACCTTTTTTCTTTAAATGTGTTCATGTATTTGTAGTAGTGGAAAACTAGCTTTTGAAAAGAGAACGGGGAGCTGAAATTTAGGAGACGATTTTGATTGACTTTTGCATAAATATTTCGTCCTCGACAATCAAGTGTTCATTTCTGTCAGTCCCAGGGACAGTGCTGCTTGGTGCGTGTGTTTTCTTCCATTGGTCGATTATAAGCAAAATTTGACCCAAACTTAGTTTCAAAGTTGTGTCTTTTACTGGATCAACTGTGTAGCTATTGCTTGTTTTTTCTTATTATTATTCAATGTGGGGCCATTTTATATTTTATTTCATAGGGATCAGTGATTCCATCAACTTCTGACTGCTGACCTTCACAGAACTTCAGTGCTAAAACTGACATTGCGTCTCTCTTTGGGTATCTTCATTCACATACATCGACCACGTCGCCCGGAAGTTCCCTTGTCTTCTTCTTCTTCCTGCCTATTTTCATGAAATATTGAAAGATATCTAGGATATGAATATATATATTAATTAGGTGAAAAAATTATGTTTGTTTTCTTGTGTCTTATTATTTTGTTGCAAGCTCAT

Coding sequence (CDS)

ATGTTGTCGGGGGATATACCGCCTAACCAGACCATATACATCAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTGTATGCTTTGTTTTCTCAATATGGAAGAATCCTTGATGTCGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCCTTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGAAAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAACCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAGAGGAAAAAGGTGATCCTGAAAAAAAGCGGCGTGCTGAAGAAGCACACCAATCTGCGATGCCCAATGGAACAACTACTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAATCCGAGTGCTACAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCCCATGAAACCTCTAGTATGATGTTGCAAGTTCTCTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCGGGTATTGCTTTCGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAAGGCTTTAAAATTGACCCCCAACATCCCATGGCTATCTCTTTCGCAAAGAAGTAA

Protein sequence

MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Cmc12g0314861 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 442.2 bits (1136), Expect = 2.8e-120
Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Cmc12g0314861 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 438.7 bits (1127), Expect = 3.1e-119
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Cmc12g0314861 vs. NCBI nr
Match: XP_038893561.1 (U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida])

HSP 1 Score: 428.3 bits (1100), Expect = 4.2e-116
Identity = 225/233 (96.57%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEEAHQSAMPNG TT NGGSNATFRHANP+A EATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEEAHQSAMPNG-TTGNGGSNATFRHANPNAAEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 230

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BLAST of Cmc12g0314861 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 427.6 bits (1098), Expect = 7.1e-116
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCVAKADG+FVPREKKKKQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKA--ERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAE++HQSAMPNGTTTENG SNATFRHANPSA EA PNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 221/233 (94.85%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKA--ERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           R EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.2e-91
Identity = 176/234 (75.21%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+G+FVP+EKK KQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEK--VERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLF 180
            AEE  Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF
Sbjct: 121 HAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           +QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 EQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.1e-86
Identity = 168/237 (70.89%), Postives = 200/237 (84.39%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+GTFVP++KK+KQEEK   E+KR
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEK--VERKR 120

Query: 121 RAEEAHQSA---MPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQ 180
              +   +A     NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ
Sbjct: 121 EDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQ 180

Query: 181 VLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           +LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.0e-85
Identity = 172/234 (73.50%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           E+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DG+  P+EK+KKQEEK   EKKR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKA-AEKKR 120

Query: 121 RAEEAHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLF 180
           RAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LF
Sbjct: 121 RAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.3e-85
Identity = 171/234 (73.08%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           E+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DG+  P+EK+KKQEEK   EKKR
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKA-AEKKR 120

Query: 121 RAEEAHQSAMPNGTTTENG-GSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLF 180
           RAEEA QS  PN     NG G  A+          A PNNILFI+NLP ET+SMMLQ+LF
Sbjct: 121 RAEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QQYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.9e-65
Identity = 137/236 (58.05%), Postives = 173/236 (73.31%), Query Frame = 0


Query: 7   PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKRRAEEAH 126
            A++ MQ+FPF+ KPMRIQYAKTKSD +AKADGTFVPRE++K+ +EK  PEKK++ E+ H
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEK--PEKKQKREQHH 139

Query: 127 Q-SAMPNGTTTENGGSNATFRHANPSATE--------ATPNNILFIENLPHETSSMMLQV 186
             S +  G     G   A      P A            PNNILF++NLPHET+ MMLQ+
Sbjct: 140 DVSQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQM 199

Query: 187 LFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           LF QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 LFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL
Match: A0A0A0LPT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDC+AKADG+FVPREKKKKQEEK   EKKR
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKA--EKKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAEE HQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL
Match: A0A6J1DLJ9 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=LOC111022049 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.4e-116
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCVAKADG+FVPREKKKKQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKA--ERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           RAE++HQSAMPNGTTTENG SNATFRHANPSA EA PNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RAEDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.9e-116
Identity = 221/233 (94.85%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+FVPREKKKKQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKA--ERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQ 180
           R EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQ
Sbjct: 121 RTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Cmc12g0314861 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.5e-92
Identity = 176/234 (75.21%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+G+FVP+EKK KQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEK--VERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLF 180
            AEE  Q +MPNG TT+NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF
Sbjct: 121 HAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDTMPPNNILFIHNLPIETNSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           +QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 EQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Cmc12g0314861 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 333.2 bits (853), Expect = 1.7e-91
Identity = 175/234 (74.79%), Postives = 201/234 (85.90%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V KA+G+FVP+EKK KQEEK   E+KR
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEK--VERKR 120

Query: 121 RAEEAHQSAMPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQVLF 180
            AEE  Q +MPNG TT+NG          PS  +   PNNILFI NLP ET+SMMLQ+LF
Sbjct: 121 HAEETQQPSMPNGATTQNGMPPP----FQPSGQDTMPPNNILFIHNLPIETNSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           +QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 EQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Cmc12g0314861 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-87
Identity = 168/237 (70.89%), Postives = 200/237 (84.39%), Query Frame = 0


Query: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR 120
           EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AKA+GTFVP++KK+KQEEK   E+KR
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEK--VERKR 120

Query: 121 RAEEAHQSA---MPNGTTTENGGSNATFRHANPSATEA-TPNNILFIENLPHETSSMMLQ 180
              +   +A     NG +  NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ
Sbjct: 121 EDSQRPNTANGPSANGPSANNGVPAPSFQ---PSGQETMPPNNILFIQNLPHETTSMMLQ 180

Query: 181 VLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           +LF+QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Cmc12g0314861 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-74
Identity = 147/199 (73.87%), Postives = 170/199 (85.43%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  KADGTFVPREKKKKQEEKGDPEKKRRAEEAHQSAMPNGTTTENGGSNATFRHANPSATEA 155
           KA+G+FVP+EKK KQEEK   E+KR AEE  Q +MPNG TT+NG     F+   PS  + 
Sbjct: 67  KAEGSFVPKEKKMKQEEK--VERKRHAEETQQPSMPNGATTQNGMPVPPFQ---PSGQDT 126

Query: 156 -TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQA 215
             PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQA
Sbjct: 127 MPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQA 186

Query: 216 LQGFKIDPQHPMAISFAKK 234
           LQGFKI PQ+PM +SFAKK
Sbjct: 187 LQGFKITPQNPMVVSFAKK 200

[Close]

BLAST of Cmc12g0314861 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 247.7 bits (631), Expect = 9.4e-66
Identity = 137/239 (57.32%), Postives = 177/239 (74.06%), Query Frame = 0


Query: 5   DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKGDPEKKR-RAE 124
           AS A+ +M NFPFY+K MRIQYAKTKSD VAKADGTFVPREK+K+ EEKG  +KK+ +  
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 EAHQSAMPNGTTTEN--GGSNATFRHANPSATE-------ATPNNILFIENLPHETSSMM 184
           ++ Q  MP  +      G +    +   P   +       A PNNILF++NLPHET+ M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 185 LQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 234
           LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Cmc12g0314861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457301.1	2.8e-120	98.71	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_004137370.1	3.1e-119	97.42	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_038893561.1	4.2e-116	96.57	U2 small nuclear ribonucleoprotein B'' 2 [Benincasa hispida]	[more]
XP_022154903.1	7.1e-116	94.42	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]
XP_022949507.1	1.2e-115	94.85	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]

BLAST of Cmc12g0314861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	2.2e-91	75.21	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	2.1e-86	70.89	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	1.0e-85	73.50	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	2.3e-85	73.08	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2Y0J7	5.9e-65	58.05	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of Cmc12g0314861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BF51	1.3e-120	98.71	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	1.3e-120	98.71	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LPT7	1.5e-119	97.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025950 PE=4 SV=1	[more]
A0A6J1DLJ9	3.4e-116	94.42	U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KA04	5.9e-116	94.85	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Cmc12g0314861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	1.5e-92	75.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.7e-91	74.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	1.5e-87	70.89	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	1.1e-74	73.87	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	9.4e-66	57.32	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..85 e-value: 2.5E-12 score: 57.0 coord: 160..229 e-value: 3.6E-10 score: 49.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..81 e-value: 1.0E-8 score: 34.8 coord: 161..221 e-value: 2.9E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 14.214708
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 159..233 score: 13.293717
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..110 e-value: 3.9E-31 score: 109.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 148..233 e-value: 5.3E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..144
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..233
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..233
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 11..88 e-value: 8.92406E-51 score: 158.075
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 157..229 e-value: 5.24335E-38 score: 125.374
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0314861.1	Cmc12g0314861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding