Cmc11g0308471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0308471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ras-related protein Rab-2A
Location	CMiso1.1chr11: 29488140 .. 29489353 (-)
RNA-Seq Expression	Cmc11g0308471
Synteny	Cmc11g0308471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCTACGATTATCTTTTCAAATATATTTTAATTGGAAACACAGGTATTAATTTCTCTAAATCTATTTCTATATATTTTTTGAATGAGTTTCAAAGAACTTTTATATATTATATTTTTTTTGTGTGTATATACAGGGGTTGGAAAATCTTACTTAATGTCACAATTTCTAAGGAAAAAGTTTGAACCAGTTCATGAAGTTACTGTGGGCGCTGAATTTGGTGTTTGTATCCTTACACCTCATGACAAAATCATTAAGCTTCATATTTGGGATACTGTTCGTTTCTTTTCTTTTTAGTTTTTTTTTTCAATCCCGCAACCCAACCCAAAATAAAATGTAACTCAATCCAACCCTTACAATTTAGATTGGGTAATTCGAGTTGGTCGGATTATTAGGTTTTTTTTAATGTTCCTACCAAATGTGGAAGTATTGATCTCCATTTTTCAATTATTGAATTACAAAAAGAAATTCTTATTCTTACAATTTTTAAGTATATTTTAATTAAAAAAATGTTGAAAATATCTACAAATATAACAAAATGGTATGACGTGATAAACATCTAGATAAGAATTACTATCCAAGTTTGAATAGATCTAGAACGTAGTTATCTACCGTGATCTATTGCATATAAAAAGTAAATTTTTACAATATTTGTAAATATTTTGGTTTCTTTTAATTAGCTAACCATAATTACTAGTAGTATTTTTAAACTGATGGTAAAATCAAAATATGTATTATTGCAGGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGTAAGTTCTAATATAAAAGTAAATTGAAATATTATAACTAAATTTGATCATAGATCATCAAACCTTAGAATAGTTAGGAATAAAAACATCAAAAGTACTGATTTGAATGAAATTTAAATGTCAACCTCAATAATTATTATTGCATTAAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGGTTAGTTTAATTTGTTTCAAAAATTCATGA

mRNA sequence

ATGGCGATCTACGATTATCTTTTCAAATATATTTTAATTGGAAACACAGGGGTTGGAAAATCTTACTTAATGTCACAATTTCTAAGGAAAAAGTTTGAACCAGTTCATGAAGTTACTGTGGGCGCTGAATTTGGTGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGGTTAGTTTAATTTGTTTCAAAAATTCATGA

Coding sequence (CDS)

ATGGCGATCTACGATTATCTTTTCAAATATATTTTAATTGGAAACACAGGGGTTGGAAAATCTTACTTAATGTCACAATTTCTAAGGAAAAAGTTTGAACCAGTTCATGAAGTTACTGTGGGCGCTGAATTTGGTGCTGGACAAGAGGCATTCAAATCAATTACAAGATCTTATTACAGAGGAGCAATCGGTGCACTTTTGGTTTATGATGTTACTAGGAGAGAGACATTCTCTAACTTGAAGAGTTGGTTGGATGATGTTAGAGAGCTTGCACATCCCGACATATCAATTATGGTGGTAGGAAATAAGATTGATAAAAATGGTCGAAGAGAAGTGACCAAAGAAGAAGGACAACATTTTGCGGAACAAAATGGACTCTTGTTTTTAGAGACATCCGCTAAAACAAGTCAAAATGTCTATGAGGTTAGTTTAATTTGTTTCAAAAATTCATGA

Protein sequence

MAIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFGAGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKIDKNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYEVSLICFKNS

Homology

[Close]

BLAST of Cmc11g0308471 vs. NCBI nr
Match: XP_008458689.1 (PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-2A-like, partial [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 9.7e-66
Identity = 138/169 (81.66%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MAIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG--------------- 60
           +AIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG               
Sbjct: 3   LAIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFGVRTLTLHDKIIKLHI 62

Query: 61  ---AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGN 120
              AGQEAFKSITRSYYRGAIGALLVYDVTRR+TFSNLKSWLDDVRELAHPDISIMVV N
Sbjct: 63  WDTAGQEAFKSITRSYYRGAIGALLVYDVTRRKTFSNLKSWLDDVRELAHPDISIMVVXN 122

Query: 121 KIDKNGRREVT--KEEGQHFAEQNGLLFLETSAKTSQNVYEVSLICFKN 150
           K+DKNGRREVT  KEEGQHFAEQNGL FLETSAKTSQNVYE   I   N
Sbjct: 123 KVDKNGRREVTKEKEEGQHFAEQNGLWFLETSAKTSQNVYEPFSIIANN 171

[Close]

BLAST of Cmc11g0308471 vs. NCBI nr
Match: KAG8384891.1 (hypothetical protein BUALT_Bualt04G0165400 [Buddleja alternifolia] >KAG8384898.1 hypothetical protein BUALT_Bualt04G0166100 [Buddleja alternifolia])

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-47
Identity = 95/141 (67.38%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG---AGQEAFKSITRSYYR 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG   AGQE+F+SITRSYYR
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMAGQESFRSITRSYYR 62

Query: 64  GAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKIDKNGRREVTKEEGQHF 123
           GA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM+VGNK D   RR V+KEEG+ F
Sbjct: 63  GAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLVGNKSDLAHRRAVSKEEGEQF 122

Query: 124 AEQNGLLFLETSAKTSQNVYE 142
           A++NGLLFLE SA+T+QNV E
Sbjct: 123 AKENGLLFLEVSARTAQNVEE 143

[Close]

BLAST of Cmc11g0308471 vs. NCBI nr
Match: KAB5541783.1 (hypothetical protein DKX38_014757 [Salix brachista] >KAG5239300.1 GTP-BINDING family protein [Salix suchowensis] >KAG5239316.1 GTP-BINDING family protein [Salix suchowensis])

HSP 1 Score: 194.9 bits (494), Expect = 5.0e-46
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDTRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VTKEEG+ FA +NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVTKEEGEQFARENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. NCBI nr
Match: KAF9676340.1 (hypothetical protein SADUNF_Sadunf09G0128500 [Salix dunnii])

HSP 1 Score: 194.9 bits (494), Expect = 5.0e-46
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VTKEEG+ FA +NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVTKEEGEQFARENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. NCBI nr
Match: XP_011016635.1 (PREDICTED: ras-related protein RABB1b [Populus euphratica] >XP_011043481.1 PREDICTED: ras-related protein RABB1b [Populus euphratica])

HSP 1 Score: 194.9 bits (494), Expect = 5.0e-46
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDARPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VTKEEG+ FA +NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVTKEEGEQFARENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.5e-48
Identity = 94/156 (60.26%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              +R V+KEEGQ FA+++GLLFLE SA+T+QNV E
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y YLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VT EEG+ FA+++GL+FLETSA+T+ NV E
Sbjct: 123 LTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot
Match: P36863 (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y YLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P+++IM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VT EEG+ FA+++GL+FLETSA+T+ NV E
Sbjct: 123 LTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-45
Identity = 90/156 (57.69%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y YLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
            + RR V+ EEG+ FA+++GL+F+E SAKT+QNV E
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-45
Identity = 90/156 (57.69%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y YLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
            + RR V+ EEG+ FA+++GL+F+E SAKT+QNV E
Sbjct: 123 LSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL
Match: A0A1S3C8F9 (LOW QUALITY PROTEIN: ras-related protein Rab-2A-like OS=Cucumis melo OX=3656 GN=LOC103498018 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 138/169 (81.66%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MAIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG--------------- 60
           +AIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG               
Sbjct: 3   LAIYDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFGVRTLTLHDKIIKLHI 62

Query: 61  ---AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGN 120
              AGQEAFKSITRSYYRGAIGALLVYDVTRR+TFSNLKSWLDDVRELAHPDISIMVV N
Sbjct: 63  WDTAGQEAFKSITRSYYRGAIGALLVYDVTRRKTFSNLKSWLDDVRELAHPDISIMVVXN 122

Query: 121 KIDKNGRREVT--KEEGQHFAEQNGLLFLETSAKTSQNVYEVSLICFKN 150
           K+DKNGRREVT  KEEGQHFAEQNGL FLETSAKTSQNVYE   I   N
Sbjct: 123 KVDKNGRREVTKEKEEGQHFAEQNGLWFLETSAKTSQNVYEPFSIIANN 171

[Close]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL
Match: A0A5N5LGA9 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_014757 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-46
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDTRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VTKEEG+ FA +NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVTKEEGEQFARENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL
Match: A0A6N2L677 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS180903 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-46
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDTRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR VTKEEG+ FA +NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVTKEEGEQFARENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL
Match: A0A2H5Q9H9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_208850 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 96/156 (61.54%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR V+KEEG+ FA++NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL
Match: A0A067EDK6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028251mg PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 96/156 (61.54%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM+VGNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR V+KEEG+ FA++NGLLFLE SA+T+QNV E
Sbjct: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-49
Identity = 94/156 (60.26%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           YDYLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+P++SIM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              +R V+KEEGQ FA+++GLLFLE SA+T+QNV E
Sbjct: 123 LAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-46
Identity = 89/156 (57.05%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y YLFKYI+IG+TGVGKS L+ QF  K+F+PVH++T+G EFG                  
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+SITRSYYRGA GALLVYD+TRRETF++L SWL+D R+ A+ +++IM++GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              RR V+ EEG+ FA+++GL+F+E SAKT+QNV E
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-41
Identity = 79/156 (50.64%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 4   YDYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------ 63
           Y Y FKYI+IG+TGVGKS L+ +F  K+F+ VH++T+G EFG                  
Sbjct: 3   YAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIWDT 62

Query: 64  AGQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKID 123
           AGQE+F+S+TRSYYRG  G LLVYD+TRRETF++L SWL++ R+ A  +++ M++GNK D
Sbjct: 63  AGQESFRSVTRSYYRGRAGTLLVYDITRRETFNHLASWLEEARQHASENMTTMLIGNKCD 122

Query: 124 KNGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYE 142
              +R V+ EEG+ FA ++GL+F+E SAKT+ NV E
Sbjct: 123 LEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEE 158

[Close]

BLAST of Cmc11g0308471 vs. TAIR 10
Match: AT1G73640.1 (RAB GTPase homolog A6A )

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-35
Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 5   DYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------A 64
           DYLFK +LIG++ VGKS L+S+F + +F    + T+G EF                   A
Sbjct: 11  DYLFKAVLIGDSAVGKSNLLSRFSKDEFRFDSKPTIGVEFAYRNVHVGDKIIKAQIWDTA 70

Query: 65  GQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKIDK 124
           GQE F++IT SYYRGA+GALL+YD+TRR TF N+K WL ++R+ A+P+  +++VGNK D 
Sbjct: 71  GQERFRAITSSYYRGALGALLIYDITRRTTFDNIKKWLFELRDFANPETVVVLVGNKSDL 130

Query: 125 NGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYEVSLI 146
              REV ++EG+  AE  GL FLETSA  + NV E  L+
Sbjct: 131 RQSREVEEDEGKTLAESEGLYFLETSALENVNVEEAFLV 169

[Close]

BLAST of Cmc11g0308471 vs. TAIR 10
Match: AT1G18200.1 (RAB GTPase homolog A6B )

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-35
Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 5   DYLFKYILIGNTGVGKSYLMSQFLRKKFEPVHEVTVGAEFG------------------A 64
           DYLFK +LIG++ VGKS L+S+F R +F    + T+G +F                   A
Sbjct: 11  DYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGDKTIKAQIWDTA 70

Query: 65  GQEAFKSITRSYYRGAIGALLVYDVTRRETFSNLKSWLDDVRELAHPDISIMVVGNKIDK 124
           GQE F++IT SYYRGA+GALL+YD+TRR TF N++ WL ++R  + P+  +++VGNK D 
Sbjct: 71  GQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGFSSPETVVVLVGNKSDL 130

Query: 125 NGRREVTKEEGQHFAEQNGLLFLETSAKTSQNVYEVSL 145
              REV +EEG+  AE  GL FLETSA  +QNV E  L
Sbjct: 131 GQSREVEEEEGKTLAESEGLYFLETSALENQNVEEAFL 168

The following BLAST results are available for this feature:

BLAST of Cmc11g0308471 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458689.1	9.7e-66	81.66	PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-2A-like, partial [Cucumi...	[more]
KAG8384891.1	4.5e-47	67.38	hypothetical protein BUALT_Bualt04G0165400 [Buddleja alternifolia] >KAG8384898.1...	[more]
KAB5541783.1	5.0e-46	61.54	hypothetical protein DKX38_014757 [Salix brachista] >KAG5239300.1 GTP-BINDING fa...	[more]
KAF9676340.1	5.0e-46	61.54	hypothetical protein SADUNF_Sadunf09G0128500 [Salix dunnii]	[more]
XP_011016635.1	5.0e-46	61.54	PREDICTED: ras-related protein RABB1b [Populus euphratica] >XP_011043481.1 PREDI...	[more]

BLAST of Cmc11g0308471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38922	5.5e-48	60.26	Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1	[more]
Q39570	1.8e-46	58.33	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=...	[more]
P36863	1.8e-46	58.33	GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1	[more]
P49103	2.6e-45	57.69	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
P49104	2.6e-45	57.69	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]

BLAST of Cmc11g0308471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8F9	4.7e-66	81.66	LOW QUALITY PROTEIN: ras-related protein Rab-2A-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5N5LGA9	2.4e-46	61.54	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_014757 PE=4 SV=1	[more]
A0A6N2L677	2.4e-46	61.54	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS180903 PE=4 SV=...	[more]
A0A2H5Q9H9	3.2e-46	61.54	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_208850 PE=4 SV=1	[more]
A0A067EDK6	3.2e-46	61.54	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028251mg PE=4 SV=1	[more]

BLAST of Cmc11g0308471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35860.1	3.9e-49	60.26	GTP-binding 2	[more]
AT4G17170.1	4.1e-46	57.05	RAB GTPase homolog B1C	[more]
AT4G17160.1	6.7e-41	50.64	RAB GTPase homolog B1A	[more]
AT1G73640.1	3.2e-35	47.17	RAB GTPase homolog A6A	[more]
AT1G18200.1	9.4e-35	47.47	RAB GTPase homolog A6B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 128..150 score: 35.26 coord: 8..29 score: 43.4 coord: 31..47 score: 25.95
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 5..149 e-value: 3.7E-11 score: 41.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 8..149 e-value: 4.0E-59 score: 212.4
None	No IPR available	PANTHER	PTHR47979:SF42	RAS-RELATED PROTEIN RABB1C-LIKE	coord: 4..46
None	No IPR available	PANTHER	PTHR47979:SF42	RAS-RELATED PROTEIN RABB1C-LIKE	coord: 46..142
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 4..46
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 46..142
None	No IPR available	PROSITE	PS51419	RAB	coord: 3..150 score: 23.908638
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 10..149 e-value: 6.4E-6 score: -41.9
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 9..44 e-value: 5.7E-7 score: 29.3 coord: 46..142 e-value: 2.3E-31 score: 108.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..150 score: 12.106748
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 46..141 e-value: 2.2E-14 score: 51.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..149 e-value: 2.7E-48 score: 165.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 4..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0308471.1	Cmc11g0308471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding