Cmc11g0307901 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0307901
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
LocationCMiso1.1chr11: 29112908 .. 29113717 (+)
RNA-Seq ExpressionCmc11g0307901
SyntenyCmc11g0307901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAATTTCCCATTCTTCTGTTCCTCTTGAATTTTGGCCTCACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGTCTTCTTCATCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCTTGATTTGCATTGTTTAAAAGTTTTTTTATGTGCATGTTACCCCATTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGACTATCCTCATAGCTTCAAAGGCTATATTTGTTACAATCCATTAACCAAACAAACCATAGTTTCACGACATGTTATCTTTCATGAAACAATCTTTCCCTATGCAAATTCCACCACATTTTCTCCACCTCAATCCTTATCCATCTCTAATCCAAGCATACTACTCACCTTACTAAACATTCTACAATATACACCCTTAAATTCTGTTCCCATTCCCAATATCCAATCCCCACCTATTCACCCTCTCACTGTTGACATTACTTGCTCATCTTTTATGGATACTAATGGCACTTGTCAGTCTTTGAATGTTTCATCTACAATCGATACAGGAAATGAGATAAATGCTACTGCAACTAACTTACCTGATCCACCTCCTCCTCAAAATACTCATGCTATGCAAACTCAAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTTCCACATCATACACAGAAGCCTCCAAATATCCAAAATGGCAAATTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCTTTAGTACCCTGA

mRNA sequence

ATGTCTCTAATTTCCCATTCTTCTGTTCCTCTTGAATTTTGGCCTCACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGTCTTCTTCATCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCTTGATTTGCATTGTTTAAAAGTTTTTTTATGTGCATGTTACCCCATTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGACTATCCTCATAGCTTCAAAGGCTATATTTGTTACAATCCATTAACCAAACAAACCATAGTTTCACGACATGTTATCTTTCATGAAACAATCTTTCCCTATGCAAATTCCACCACATTTTCTCCACCTCAATCCTTATCCATCTCTAATCCAAGCATACTACTCACCTTACTAAACATTCTACAATATACACCCTTAAATTCTGTTCCCATTCCCAATATCCAATCCCCACCTATTCACCCTCTCACTGTTGACATTACTTGCTCATCTTTTATGGATACTAATGGCACTTGTCAGTCTTTGAATGTTTCATCTACAATCGATACAGGAAATGAGATAAATGCTACTGCAACTAACTTACCTGATCCACCTCCTCCTCAAAATACTCATGCTATGCAAACTCAAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTTCCACATCATACACAGAAGCCTCCAAATATCCAAAATGGCAAATTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCTTTAGTACCCTGA

Coding sequence (CDS)

ATGTCTCTAATTTCCCATTCTTCTGTTCCTCTTGAATTTTGGCCTCACGCCTTCTCCACTGCAGTCTTTCTTATTAATCGAATGTCTTCTTCATCACTTAAAATGTTATCACCATTTGAAATGCTTTTTGGTTATACTCTTGATTTGCATTGTTTAAAAGTTTTTTTATGTGCATGTTACCCCATTCTCAAGCCTTACACCAAACACAAACTTGAACCAAAAACCACCCAACATGTATTTTTAGACTATCCTCATAGCTTCAAAGGCTATATTTGTTACAATCCATTAACCAAACAAACCATAGTTTCACGACATGTTATCTTTCATGAAACAATCTTTCCCTATGCAAATTCCACCACATTTTCTCCACCTCAATCCTTATCCATCTCTAATCCAAGCATACTACTCACCTTACTAAACATTCTACAATATACACCCTTAAATTCTGTTCCCATTCCCAATATCCAATCCCCACCTATTCACCCTCTCACTGTTGACATTACTTGCTCATCTTTTATGGATACTAATGGCACTTGTCAGTCTTTGAATGTTTCATCTACAATCGATACAGGAAATGAGATAAATGCTACTGCAACTAACTTACCTGATCCACCTCCTCCTCAAAATACTCATGCTATGCAAACTCAAGCAAAATCAGGTATTTTTAAGCCAAAGGCCTTTCACATTACAACTGCTCTCCCAACTTCCACATCATACACAGAAGCCTCCAAATATCCAAAATGGCAAATTGCGATGCATGAGGAATTCAATGCTCTTCAAGCACAAGGTACCTGGTCTTTAGTACCCTGA

Protein sequence

MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYPILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP
Homology
BLAST of Cmc11g0307901 vs. NCBI nr
Match: KAA0045362.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 2.0e-69
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0

Query: 111 TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCS 170
           TIFPYANST  SP QSLSISNPSILLTLLNI Q+TPLNS+ IPNIQS PI P TVDITCS
Sbjct: 50  TIFPYANSTNSSPSQSLSISNPSILLTLLNIPQHTPLNSILIPNIQSAPIRPPTVDITCS 109

Query: 171 SFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHIT 230
           SFMDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NTHAMQT+AKS IFKPKAFHIT
Sbjct: 110 SFMDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSDIFKPKAFHIT 169

Query: 231 TALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           TALPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Sbjct: 170 TALPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVP 208

BLAST of Cmc11g0307901 vs. NCBI nr
Match: TYJ96936.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-42
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 173 MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTA 232
           MDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NTHAMQT+AKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 233 LPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           LPT TSYTEASKYP+WQ AMHEEFNALQAQGTWSLVP
Sbjct: 61  LPTPTSYTEASKYPEWQTAMHEEFNALQAQGTWSLVP 97

BLAST of Cmc11g0307901 vs. NCBI nr
Match: PKU66571.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-41
Identity = 116/273 (42.49%), Postives = 160/273 (58.61%), Query Frame = 0

Query: 2   SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYP 61
           +L+  +++P  FW  A STA +LINR+ + +  +  P++ ++G   D   L+ F C CYP
Sbjct: 506 TLLHEANLPHLFWAEALSTANYLINRLPTKACNLTIPYQTIYGTLPDYEHLRTFGCLCYP 565

Query: 62  ILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANSTTF 121
            L+P T +KL+P++   VFL Y  S KGY CYN  T++  +SRHVIFHET FPY N    
Sbjct: 566 WLRPLTTNKLQPRSQDCVFLGYSSSQKGYRCYNLQTRKIHISRHVIFHETHFPYHN---L 625

Query: 122 SPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHP-LTVDITCSSFMDTNGTCQ 181
           SPP  +S S P I          +PL  +P   ++  PI+P L+   + SSF     T  
Sbjct: 626 SPPPPIS-SPPPI---------SSPLMLIPTSTLK--PIYPTLSPTHSSSSFPTHTSTES 685

Query: 182 SLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFH----ITTALPTS 241
           SLN S TI T    + T +  P PPPPQ  H M+T+ K+G  KPK       +TT+  T 
Sbjct: 686 SLN-SPTISTS---SVTPSLSPTPPPPQ--HQMKTRFKTGNLKPKTIFDLSAVTTSNSTP 745

Query: 242 TSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           TSYT+A+K+P+W+ AM +EF ALQ Q TWSL P
Sbjct: 746 TSYTQANKFPQWREAMSKEFLALQKQSTWSLTP 757

BLAST of Cmc11g0307901 vs. NCBI nr
Match: KAA0056830.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ99954.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-40
Identity = 98/141 (69.50%), Postives = 111/141 (78.72%), Query Frame = 0

Query: 123 PPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFM-DTNGTCQS 182
           P QS+S S+ SILLTLLNI  +TP     I NIQSPP +P  VDIT SSF+ +TN T QS
Sbjct: 15  PSQSISNSDSSILLTLLNIPHHTPSPFASISNIQSPPPNPPAVDITYSSFITNTNATSQS 74

Query: 183 LNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTSTSYTE 242
           LNVSST++  N+INA  TN+  PPPP+NTH MQT+ KSGIFKPKAFHITTALPT TSYTE
Sbjct: 75  LNVSSTVNIRNDINAATTNIHVPPPPRNTHTMQTREKSGIFKPKAFHITTALPTPTSYTE 134

Query: 243 ASKYPKWQIAMHEEFNALQAQ 263
           ASKYPKW  AM EEF+ALQAQ
Sbjct: 135 ASKYPKWCTAMCEEFDALQAQ 155

BLAST of Cmc11g0307901 vs. NCBI nr
Match: KAA0066360.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-40
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0

Query: 173 MDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHITTA 232
           MDTN TCQSLN+SS +DTGNEINAT  NLPDPPP +NTHAMQT+AKSGIFKPKAFHITTA
Sbjct: 1   MDTNATCQSLNISSIVDTGNEINATTINLPDPPPSRNTHAMQTRAKSGIFKPKAFHITTA 60

Query: 233 LPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           LPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Sbjct: 61  LPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVP 97

BLAST of Cmc11g0307901 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.3e-26
Identity = 85/255 (33.33%), Postives = 136/255 (53.33%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++L+SH+S+P  +WP+AF+ AV+LINR+ +  L++ SPF+ LFG + +   L+VF CACY
Sbjct: 637 LTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACY 696

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYAN-ST 120
           P L+PY +HKL+ K+ Q VFL Y  +   Y+C +  T +  +SRHV F E  FP++N   
Sbjct: 697 PWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLA 756

Query: 121 TFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSS-FMDTNGT 180
           T SP Q     +  +      +   TP+  +P P+  S P H  T   + S+ F ++  +
Sbjct: 757 TLSPVQEQRRESSCVWSPHTTLPTRTPV--LPAPSC-SDPHHAATPPSSPSAPFRNSQVS 816

Query: 181 CQSL--NVSSTIDTGNEINATATNLPDP--PPPQ---NTHAMQTQAKSGIFKPKAFHITT 240
             +L  + SS+  +  E  A   N P P   P Q    TH+ Q  +++         +  
Sbjct: 817 SSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQ 876

Query: 241 ALPTSTSYTEASKYP 247
           +L T    + +S  P
Sbjct: 877 SLSTPAQSSSSSPSP 888

BLAST of Cmc11g0307901 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-24
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++L+SH+SVP  +WP+AFS AV+LINR+ +  L++ SPF+ LFG   +   LKVF CACY
Sbjct: 616 LTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACY 675

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANS-- 120
           P L+PY +HKLE K+ Q  F+ Y  +   Y+C +  T +   SRHV F E  FP++ +  
Sbjct: 676 PWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNF 735

Query: 121 --TTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTN 180
             +T    +S S  N     TL       P      P++ + P  P +    C++ + ++
Sbjct: 736 GVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSS 795

Query: 181 GTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQ 215
                   SS+I + +    TA +   P P    H  Q
Sbjct: 796 NL-----PSSSISSPSSSEPTAPSHNGPQPTAQPHQTQ 828

BLAST of Cmc11g0307901 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07
Identity = 34/110 (30.91%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 2   SLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACYP 61
           S++  + +P  FW  A  TA +LINR  S  L    P  +     +    LKVF C  + 
Sbjct: 598 SMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFA 657

Query: 62  ILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHET 112
            +    + KL+ K+   +F+ Y     GY  ++P+ K+ I SR V+F E+
Sbjct: 658 HVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES 707

BLAST of Cmc11g0307901 vs. ExPASy TrEMBL
Match: A0A5A7TPR4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001410 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-70
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0

Query: 111 TIFPYANSTTFSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCS 170
           TIFPYANST  SP QSLSISNPSILLTLLNI Q+TPLNS+ IPNIQS PI P TVDITCS
Sbjct: 50  TIFPYANSTNSSPSQSLSISNPSILLTLLNIPQHTPLNSILIPNIQSAPIRPPTVDITCS 109

Query: 171 SFMDTNGTCQSLNVSSTIDTGNEINATATNLPDPPPPQNTHAMQTQAKSGIFKPKAFHIT 230
           SFMDTN TCQSLNVSST+DTGNEINAT  NLPDPPPP+NTHAMQT+AKS IFKPKAFHIT
Sbjct: 110 SFMDTNATCQSLNVSSTVDTGNEINATTINLPDPPPPRNTHAMQTRAKSDIFKPKAFHIT 169

Query: 231 TALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           TALPT TSYTEASKYP+W+ AMHEEFNALQAQGTWSLVP
Sbjct: 170 TALPTPTSYTEASKYPEWRTAMHEEFNALQAQGTWSLVP 208

BLAST of Cmc11g0307901 vs. ExPASy TrEMBL
Match: A0A2N9GDM9 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25223 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 120/297 (40.40%), Postives = 169/297 (56.90%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++++S S +P+ +W HA STA  LINR+ + +L   +P+E+LF    DL  L+ F C C+
Sbjct: 664 LAILSESKLPMSYWSHAVSTATHLINRLPTPNLSYNNPWELLFQKPPDLTYLRSFGCQCF 723

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFP-YANST 120
           P+L PYT HKL PKTT  VF+ YP   KGY+C +P+TK+  VSRHV+F+ETIFP   +ST
Sbjct: 724 PLLTPYTAHKLHPKTTPCVFIGYPTHTKGYLCLDPITKRLYVSRHVLFNETIFPGLTHST 783

Query: 121 TFSPPQSLSISNPSILLTLL---NILQYTP---------------LNSVPIPNIQSPPIH 180
                 +  I +P+  +T +   +   +TP                 S+P+P   SP   
Sbjct: 784 NALHSSATHIISPNTWMTTIPSSHTCSHTPPLPTLPTESNTASPTNTSLPLPLPNSPLPS 843

Query: 181 PLTVDITCSSFMDTNGTCQS-LNVSSTIDTGNEINATATNLPD-----PPPPQNTHAMQT 240
           P +   + SS  +++ +  S   + +T  T    + T T LP      P  P NTH MQT
Sbjct: 844 PFSSAESHSSSAESHSSPTSPTPIPATSPTPIPTSITLTTLPTPSLPVPSVPPNTHPMQT 903

Query: 241 QAKSGIFKPK---AFHITTALPTSTSYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
           ++K+GIFKPK   A H    L   T+Y  ASK+P+W  AM EEF ALQ QGTW+LVP
Sbjct: 904 RSKNGIFKPKLGYAAHTDYTLTKPTTYATASKHPQWCNAMDEEFEALQKQGTWTLVP 960

BLAST of Cmc11g0307901 vs. ExPASy TrEMBL
Match: A0A2N9GRJ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.3e-45
Identity = 121/281 (43.06%), Postives = 171/281 (60.85%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++LIS SS+PL++WP+AFSTA++LINRM + +LK  SP+++LF    D   LK F C C+
Sbjct: 705 LTLISESSLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLFHTNPDYSFLKTFGCLCF 764

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANSTT 120
           P+L+PY KHKLEP+++  VFL Y  + KGY+C N  T + ++SRHV FHE  FP+ + T+
Sbjct: 765 PLLRPYNKHKLEPRSSPCVFLGYALNAKGYLCLNLQTHKLLISRHVAFHENSFPFKSQTS 824

Query: 121 FSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGT 180
            S     S S PS    L ++L + P  +   P+I  PP  + PL+     SS +  + +
Sbjct: 825 PS-----SCSTPS-NTWLSSVLYFHPCTA---PSILGPPPSLPPLSGSTPLSSSL-PDVS 884

Query: 181 CQSLNVSSTIDTGNEINAT----ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITT 240
            Q+   S  + T +  + +    + ++P  P  PP N+H MQT+ KSGI K K   H  T
Sbjct: 885 AQTEPPSPLLHTTSSPHISCPVPSCSVPSGPILPPINSHPMQTRGKSGISKRKLLLHTKT 944

Query: 241 ALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
             P  T   SY  ASKYP+WQ AM +E+ ALQ Q TWSLVP
Sbjct: 945 LNPLETEPPSYKVASKYPEWQSAMLDEYTALQRQQTWSLVP 975

BLAST of Cmc11g0307901 vs. ExPASy TrEMBL
Match: A0A2N9FMC6 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16294 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.3e-45
Identity = 121/281 (43.06%), Postives = 171/281 (60.85%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++LIS SS+PL++WP+AFSTA++LINRM + +LK  SP+++LF    D   LK F C C+
Sbjct: 532 LTLISESSLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLFHTNPDYSFLKTFGCLCF 591

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANSTT 120
           P+L+PY KHKLEP+++  VFL Y  + KGY+C N  T + ++SRHV FHE  FP+ + T+
Sbjct: 592 PLLRPYNKHKLEPRSSPCVFLGYALNAKGYLCLNLQTHKLLISRHVAFHENSFPFKSQTS 651

Query: 121 FSPPQSLSISNPSILLTLLNILQYTPLNSVPIPNIQSPP--IHPLTVDITCSSFMDTNGT 180
            S     S S PS    L ++L + P  +   P+I  PP  + PL+     SS +  + +
Sbjct: 652 PS-----SCSTPS-NTWLSSVLYFHPCTA---PSILGPPPSLPPLSGSTPLSSSL-PDVS 711

Query: 181 CQSLNVSSTIDTGNEINAT----ATNLPDPP--PPQNTHAMQTQAKSGIFKPK-AFHITT 240
            Q+   S  + T +  + +    + ++P  P  PP N+H MQT+ KSGI K K   H  T
Sbjct: 712 AQTEPPSPLLHTTSSPHISCPVPSCSVPSGPILPPINSHPMQTRGKSGISKRKLLLHTKT 771

Query: 241 ALPTST---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
             P  T   SY  ASKYP+WQ AM +E+ ALQ Q TWSLVP
Sbjct: 772 LNPLETEPPSYKVASKYPEWQSAMLDEYTALQRQQTWSLVP 802

BLAST of Cmc11g0307901 vs. ExPASy TrEMBL
Match: A0A2N9ISJ0 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55704 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.2e-45
Identity = 119/275 (43.27%), Postives = 160/275 (58.18%), Query Frame = 0

Query: 1   MSLISHSSVPLEFWPHAFSTAVFLINRMSSSSLKMLSPFEMLFGYTLDLHCLKVFLCACY 60
           ++L+SH+S+P+  W HA +TA+ LINR+ +  L   SP+EMLF    DL  LK F C C+
Sbjct: 582 ITLLSHASLPITHWSHAVTTAIHLINRIPTPKLTHKSPWEMLFHKPPDLTHLKTFGCMCF 641

Query: 61  PILKPYTKHKLEPKTTQHVFLDYPHSFKGYICYNPLTKQTIVSRHVIFHETIFPYANSTT 120
           P L+PY  HKL+P+TT  +FL YP   KGYIC +P T +T +SRHV+F+E+ F  ++S  
Sbjct: 642 PYLRPYNTHKLQPRTTPCLFLGYPPHSKGYICLDPKTNRTYISRHVLFNESEFLSSSSLK 701

Query: 121 FSPPQSLS--ISNPSILLTLLNILQYTPLNSVPIPNIQSPPIHPLTVDITCSSFMDTNGT 180
            + P S S   S   ++  L +I   T  +S     + SP  H         S  + N  
Sbjct: 702 STSPASSSPVTSTFDLVPWLSDIPTLTQTSSPTDQEVSSPITH---------SPHEPNSP 761

Query: 181 CQSLNVSSTIDTGNEINATATNLP-DPPPPQNTHAMQTQAKSGIFKPKAFHITTALPTST 240
             SL + STI         + +LP  P  P NTH M T++K GIFKPK+FH TT   T T
Sbjct: 762 SASLPIESTI-------VPSASLPIAPSAPVNTHPMNTRSKHGIFKPKSFHTTTTDYTHT 821

Query: 241 ---SYTEASKYPKWQIAMHEEFNALQAQGTWSLVP 270
              +Y  ASK+P+W  AM EEF+ALQ Q TWSLVP
Sbjct: 822 EPPTYQIASKFPQWCSAMDEEFSALQRQQTWSLVP 840

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045362.12.0e-6986.79putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYJ96936.11.2e-4290.72putative mitochondrial protein [Cucumis melo var. makuwa][more]
PKU66571.11.7e-4142.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
KAA0056830.11.9e-4069.50putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ99954.1 putative m... [more]
KAA0066360.11.9e-4086.60putative mitochondrial protein [Cucumis melo var. makuwa] >TYK00923.1 putative m... [more]
Match NameE-valueIdentityDescription
Q94HW26.3e-2633.33Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.5e-2434.40Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.7e-0730.91Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5A7TPR49.6e-7086.79Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A2N9GDM92.1e-4540.40Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9GRJ06.3e-4543.06Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1[more]
A0A2N9FMC66.3e-4543.06Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9ISJ08.2e-4543.27Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0307901.1Cmc11g0307901.1mRNA