Cmc11g0306221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0306221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ATP synthase subunit a
Location	CMiso1.1chr11: 27460813 .. 27461025 (-)
RNA-Seq Expression	Cmc11g0306221
Synteny	Cmc11g0306221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACCTTATAGCTTCACATTGACAAGTCATTTTCTCATTACTTTGGGTCTCTCGTTTTCTCTTTTTATTGCTATTACTATAGTGGGATTTCAAAGAAATTGGCTTCATTTTTTCAGTTTTTTATTACCCGTAAGAGTTTCACTACCATTAGCACCTTTTTTAATACTCCTTGAGCTAATCCCTTATTGTTTTCGCGCATTAAGCTCATGA

mRNA sequence

ATGATACCTTATAGCTTCACATTGACAAGTCATTTTCTCATTACTTTGGGTCTCTCGTTTTCTCTTTTTATTGCTATTACTATAGTGGGATTTCAAAGAAATTGGCTTCATTTTTTCAGTTTTTTATTACCCGTAAGAGTTTCACTACCATTAGCACCTTTTTTAATACTCCTTGAGCTAATCCCTTATTGTTTTCGCGCATTAAGCTCATGA

Coding sequence (CDS)

ATGATACCTTATAGCTTCACATTGACAAGTCATTTTCTCATTACTTTGGGTCTCTCGTTTTCTCTTTTTATTGCTATTACTATAGTGGGATTTCAAAGAAATTGGCTTCATTTTTTCAGTTTTTTATTACCCGTAAGAGTTTCACTACCATTAGCACCTTTTTTAATACTCCTTGAGCTAATCCCTTATTGTTTTCGCGCATTAAGCTCATGA

Protein sequence

MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLELIPYCFRALSS

Homology

[Close]

BLAST of Cmc11g0306221 vs. NCBI nr
Match: ADV15979.1 (ATP synthase F0 subunit 6, partial [Cuscuta europaea])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 70  MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 129

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 130 IPHCFRALSS 139

[Close]

BLAST of Cmc11g0306221 vs. NCBI nr
Match: AEN56130.1 (ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumis melo var. momordica])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 118 MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 177

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 178 IPHCFRALSS 187

[Close]

BLAST of Cmc11g0306221 vs. NCBI nr
Match: YP_004849344.1 (ATPase subunit 6 [Cucumis sativus] >ADZ10771.1 ATPase subunit 6 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 109 MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 168

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 169 IPHCFRALSS 178

[Close]

BLAST of Cmc11g0306221 vs. NCBI nr
Match: XP_031096219.1 (uncharacterized protein LOC116000291 [Ipomoea triloba])

HSP 1 Score: 116.7 bits (291), Expect = 8.1e-23
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 232 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 291

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 292 IPHCFRALSS 301

[Close]

BLAST of Cmc11g0306221 vs. NCBI nr
Match: ADV15977.1 (ATP synthase F0 subunit 6, partial [Cuscuta gronovii] >ADV15978.1 ATP synthase F0 subunit 6, partial [Cuscuta sandwichiana] >ADV15981.1 ATP synthase F0 subunit 6, partial [Convolvulus assyricus])

HSP 1 Score: 116.7 bits (291), Expect = 8.1e-23
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 70  MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 129

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 130 IPHCFRALSS 139

[Close]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot
Match: P05499 (ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-25
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQ+N LHF SFLLP  V LPLAPFL+LLEL
Sbjct: 236 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVPLPLAPFLVLLEL 295

Query: 61  IPYCFRALSS 71
           IPYCFRALSS
Sbjct: 296 IPYCFRALSS 305

[Close]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot
Match: P05500 (ATP synthase subunit a OS=Oenothera berteroana OX=3950 GN=ATP6 PE=2 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-24
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQRN LHF SFLLP  V LPLAPFL+LLEL
Sbjct: 135 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLEL 194

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 195 ISYCFRALS 203

[Close]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot
Match: Q04654 (ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-24
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQRN LHF SFLLP  V LPLAPFL+LLEL
Sbjct: 136 MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLEL 195

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 196 ISYCFRALS 204

[Close]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot
Match: P93298 (ATP synthase subunit a-1 OS=Arabidopsis thaliana OX=3702 GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-23
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITL LSFS+FI ITIVGFQR+ LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 239 MIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLEL 298

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 299 ISYCFRALS 307

[Close]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot
Match: P92547 (ATP synthase subunit a-2 OS=Arabidopsis thaliana OX=3702 GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-23
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITL LSFS+FI ITIVGFQR+ LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 203 MIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLEL 262

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 263 ISYCFRALS 271

[Close]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL
Match: G3EU41 (ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 118 MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 177

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 178 IPHCFRALSS 187

[Close]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL
Match: E7E1Y7 (ATP synthase subunit a (Fragment) OS=Cuscuta europaea OX=41803 GN=atp6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 70  MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 129

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 130 IPHCFRALSS 139

[Close]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL
Match: G3EIZ6 (ATP synthase subunit a OS=Cucumis sativus OX=3659 GN=atp6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 109 MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 168

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 169 IPHCFRALSS 178

[Close]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL
Match: A0A3S5HPI7 (ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFSLFI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 118 MIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 177

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 178 IPHCFRALSS 187

[Close]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL
Match: E7E1Y9 (ATP synthase subunit a (Fragment) OS=Convolvulus assyricus OX=197366 GN=atp6 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITLGLSFS+FI ITIVGFQRN LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 70  MIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLEL 129

Query: 61  IPYCFRALSS 71
           IP+CFRALSS
Sbjct: 130 IPHCFRALSS 139

[Close]

BLAST of Cmc11g0306221 vs. TAIR 10
Match: AT2G07741.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITL LSFS+FI ITIVGFQR+ LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 239 MIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLEL 298

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 299 ISYCFRALS 307

[Close]

BLAST of Cmc11g0306221 vs. TAIR 10
Match: ATMG01170.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITL LSFS+FI ITIVGFQR+ LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 203 MIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLEL 262

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 263 ISYCFRALS 271

[Close]

BLAST of Cmc11g0306221 vs. TAIR 10
Match: ATMG00410.1 (ATPase subunit 6-1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MIPYSFTLTSHFLITLGLSFSLFIAITIVGFQRNWLHFFSFLLPVRVSLPLAPFLILLEL 60
           MIPYSFT+TSHFLITL LSFS+FI ITIVGFQR+ LHFFSFLLP  V LPLAPFL+LLEL
Sbjct: 239 MIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLEL 298

Query: 61  IPYCFRALS 70
           I YCFRALS
Sbjct: 299 ISYCFRALS 307

The following BLAST results are available for this feature:

BLAST of Cmc11g0306221 vs. NCBI nr


Match Name	E-value	Identity	Description
ADV15979.1	4.7e-23	88.57	ATP synthase F0 subunit 6, partial [Cuscuta europaea]	[more]
AEN56130.1	4.7e-23	88.57	ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumi...	[more]
YP_004849344.1	4.7e-23	88.57	ATPase subunit 6 [Cucumis sativus] >ADZ10771.1 ATPase subunit 6 [Cucumis sativus...	[more]
XP_031096219.1	8.1e-23	87.14	uncharacterized protein LOC116000291 [Ipomoea triloba]	[more]
ADV15977.1	8.1e-23	87.14	ATP synthase F0 subunit 6, partial [Cuscuta gronovii] >ADV15978.1 ATP synthase F...	[more]

BLAST of Cmc11g0306221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05499	3.1e-25	85.71	ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1	[more]
P05500	4.4e-24	85.51	ATP synthase subunit a OS=Oenothera berteroana OX=3950 GN=ATP6 PE=2 SV=2	[more]
Q04654	4.4e-24	85.51	ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1	[more]
P93298	1.7e-23	84.06	ATP synthase subunit a-1 OS=Arabidopsis thaliana OX=3702 GN=ATP6-1 PE=2 SV=2	[more]
P92547	1.7e-23	84.06	ATP synthase subunit a-2 OS=Arabidopsis thaliana OX=3702 GN=ATP6-2 PE=2 SV=2	[more]

BLAST of Cmc11g0306221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EU41	2.3e-23	88.57	ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1	[more]
E7E1Y7	2.3e-23	88.57	ATP synthase subunit a (Fragment) OS=Cuscuta europaea OX=41803 GN=atp6 PE=3 SV=1	[more]
G3EIZ6	2.3e-23	88.57	ATP synthase subunit a OS=Cucumis sativus OX=3659 GN=atp6 PE=3 SV=1	[more]
A0A3S5HPI7	2.3e-23	88.57	ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV...	[more]
E7E1Y9	3.9e-23	87.14	ATP synthase subunit a (Fragment) OS=Convolvulus assyricus OX=197366 GN=atp6 PE=...	[more]

BLAST of Cmc11g0306221 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07741.1	1.2e-24	84.06	ATPase, F0 complex, subunit A protein	[more]
ATMG01170.1	1.2e-24	84.06	ATPase, F0 complex, subunit A protein	[more]
ATMG00410.1	1.2e-24	84.06	ATPase subunit 6-1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000568	ATP synthase, F0 complex, subunit A	PFAM	PF00119	ATP-synt_A	coord: 1..69 e-value: 1.5E-9 score: 38.0
IPR035908	ATP synthase, F0 complex, subunit A superfamily	GENE3D	1.20.120.220	ATP synthase, F0 complex, subunit A	coord: 1..70 e-value: 1.8E-8 score: 36.7
IPR035908	ATP synthase, F0 complex, subunit A superfamily	SUPERFAMILY	81336	F1F0 ATP synthase subunit A	coord: 1..69
IPR045083	ATP synthase, F0 complex, subunit A, bacterial/mitochondria	PANTHER	PTHR11410	ATP SYNTHASE SUBUNIT A	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0306221.1	Cmc11g0306221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity