Cmc11g0305431 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0305431
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 26741840 .. 26742559 (-)
RNA-Seq ExpressionCmc11g0305431
SyntenyCmc11g0305431
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

mRNA sequence

ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

Coding sequence (CDS)

ATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGAAGTAACGCTGTTAGTCCTGGATATGCTCGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCTAGCATAGATTGTTCCCGTAAGGAGGTAACGTTTAACCCTTCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAGGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGTCGATGTATCCCTGTCATCAGAACCGGTGGTGAGGGACTATCCGGATGTCTTTCCTGAAGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTATAGGATGGCCCTCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCCCCTTGGGGTGCGCTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGAAGATCTATTTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCATGA

Protein sequence

MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSSMASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS
Homology
[Close]
BLAST of Cmc11g0305431 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.0 bits (1190), Expect = 1.6e-126
Identity = 235/239 (98.33%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 910  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 969

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1148

[Close]
BLAST of Cmc11g0305431 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.8 bits (1187), Expect = 3.5e-126
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 799  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 858

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPS+S
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1037

[Close]
BLAST of Cmc11g0305431 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 461.1 bits (1185), Expect = 5.9e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWL ANHASIDCSRKEVTFNP S
Sbjct: 409 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLVANHASIDCSRKEVTFNPPS 468

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 647

[Close]
BLAST of Cmc11g0305431 vs. NCBI nr
Match: KAA0063192.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 460.7 bits (1184), Expect = 7.8e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 300 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 359

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 360 MASFKFKGGGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 419

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AE+KELKVQLQELLDKGFIRPSVS
Sbjct: 420 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAEMKELKVQLQELLDKGFIRPSVS 479

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 480 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 538

[Close]
BLAST of Cmc11g0305431 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 460.3 bits (1183), Expect = 1.0e-125
Identity = 234/239 (97.91%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIA HVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 552 MLSKEKVKACQIEIADHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 611

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 790

[Close]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0 

Query: 117 YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKG 176
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 177 FIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFS 236
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 237 KIDLRS 240
            +DL S
Sbjct: 684 TLDLHS 689

[Close]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0 

Query: 117 YPDVFPEELPGLPP---HREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKG 176
           Y ++   +LP  P    +  V+  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 177 FIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFS 236
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 237 KIDLRS 240
            +DL S
Sbjct: 710 TLDLHS 715

[Close]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-15
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 0 

Query: 115 RDYPDVFPEELPGLPPHREVEFAIELEPGTV--------------PISRAPYRMALAELK 174
           +++P++F  +L  +       FA+E EP TV              P+    YR   ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 175 ELKVQLQELLDKGFIRPSVSPWGALVLFVKKKDG------SMRLCIDYRELNKVTVKNRY 234
           E++ Q+Q+L+    + PSVS + + +L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

Query: 235 PLPRIEDLFDQLQGATVFSKIDLRS 240
           PLPRI+D+ DQL  A  FS +DL S
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDLMS 413

[Close]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0 

Query: 123 EELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPW 182
           E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 183 GALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
              V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0 

Query: 123 EELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVSPW 182
           E+LP   P + +EF +EL      +    Y +   +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 183 GALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
              V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 7.6e-127
Identity = 235/239 (98.33%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 910  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 969

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 970  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 1029

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 1030 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1089

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 1090 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1148

[Close]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.7e-126
Identity = 234/239 (97.91%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1    MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
            MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 799  MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 858

Query: 61   MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
            MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 859  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 918

Query: 121  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
            FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPS+S
Sbjct: 919  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMS 978

Query: 181  PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
            PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 979  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 1037

[Close]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 2.9e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWL ANHASIDCSRKEVTFNP S
Sbjct: 409 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLVANHASIDCSRKEVTFNPPS 468

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 469 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 528

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 529 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 588

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 589 PWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 647

[Close]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match: A0A5A7V4L7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00850 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.8e-126
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 300 MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 359

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVIS IRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 360 MASFKFKGGGSRSLPQVISTIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 419

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AE+KELKVQLQELLDKGFIRPSVS
Sbjct: 420 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAEMKELKVQLQELLDKGFIRPSVS 479

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 480 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 538

[Close]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.9e-126
Identity = 234/239 (97.91%), Postives = 235/239 (98.33%), Query Frame = 0 

Query: 1   MLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPSS 60
           MLSKEKVKACQIEIA HVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP S
Sbjct: 552 MLSKEKVKACQIEIADHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 611

Query: 61  MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 120
           MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV
Sbjct: 612 MASFKFKGGGSRSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDV 671

Query: 121 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMALAELKELKVQLQELLDKGFIRPSVS 180
           FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMA AELKELKVQLQELLDKGFIRPSVS
Sbjct: 672 FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 731

Query: 181 PWGALVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRS 240
           PWGA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRS
Sbjct: 732 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 790

The following BLAST results are available for this feature:
BLAST of Cmc11g0305431 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047433.11.6e-12698.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031931.13.5e-12697.91pol protein [Cucumis melo var. makuwa][more]
KAA0032356.15.9e-12697.49ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063192.17.8e-12697.49ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0040188.11.0e-12597.91pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc11g0305431 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q993151.1e-1838.89Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.1e-1838.89Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P103944.4e-1533.10Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Q9UR071.3e-1435.90Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT411.3e-1435.90Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TV577.6e-12798.33Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SQU81.7e-12697.91Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
A0A5A7SQP52.9e-12697.49Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7V4L73.8e-12697.49Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TB424.9e-12697.91Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11... [more]
BLAST of Cmc11g0305431 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availablePFAMPF08284RVP_2coord: 4..59
e-value: 2.0E-16
score: 60.0
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 135..213
e-value: 1.4E-41
score: 144.1
NoneNo IPR availablePANTHERPTHR24559:SF330RNA-DIRECTED DNA POLYMERASE HOMOLOGcoord: 18..211
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 18..211
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 1..41
e-value: 6.53472E-9
score: 50.0276
NoneNo IPR availableCDDcd01647RT_LTRcoord: 173..239
e-value: 1.26729E-33
score: 117.696
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 214..239
e-value: 1.4E-41
score: 144.1
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 2..66
e-value: 2.8E-14
score: 55.0
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 113..239

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0305431.1Cmc11g0305431.1mRNA