Cmc11g0305421 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0305421
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 26740979 .. 26741758 (-)
RNA-Seq ExpressionCmc11g0305421
SyntenyCmc11g0305421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCGGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTTCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCGGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGTGA

mRNA sequence

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCGGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTTCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCGGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGTGA

Coding sequence (CDS)

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAGCATTTACGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCGGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTTCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCGGTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATATTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGTGA

Protein sequence

MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDAFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ
Homology
BLAST of Cmc11g0305421 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 519.2 bits (1336), Expect = 2.0e-143
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK
Sbjct: 263 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 322

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 323 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 382

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 383 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 442

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 443 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 502

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 503 TDHKSLKYFFTQKELNMRQ 521

BLAST of Cmc11g0305421 vs. NCBI nr
Match: KAA0053234.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 519.2 bits (1336), Expect = 2.0e-143
Identity = 257/259 (99.23%), Postives = 259/259 (100.00%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 688 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 747

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 748 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 807

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSD
Sbjct: 808 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVIYSD 867

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 868 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 927

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 928 TDHKSLKYFFTQKELNMRQ 946

BLAST of Cmc11g0305421 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 518.1 bits (1333), Expect = 4.4e-143
Identity = 257/259 (99.23%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 933

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 934 TDHKSLKYFFTQKELNMRQ 952

BLAST of Cmc11g0305421 vs. NCBI nr
Match: KAA0050009.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.5 bits (1329), Expect = 1.3e-142
Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSF LTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK
Sbjct: 73  MSFSLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 132

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKL+TAPVLTVPDGSGSFVIYSD
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLITAPVLTVPDGSGSFVIYSD 252

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 253 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 312

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 313 TDHKSLKYFFTQKELNMRQ 331

BLAST of Cmc11g0305421 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 256/259 (98.84%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1    MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
            MSFGLTNAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 2399 MSFGLTNAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 2458

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 2459 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 2518

Query: 121  RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
            RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 2519 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 2578

Query: 181  AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 2579 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 2638

Query: 241  TDHKSLKYFFTQKELNMRQ 260
            TDHKSLKYFFTQKELNMRQ
Sbjct: 2639 TDHKSLKYFFTQKELNMRQ 2657

BLAST of Cmc11g0305421 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-50
Identity = 99/255 (38.82%), Postives = 151/255 (59.22%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+  +  P+   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYS 180
           +F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DAFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DA    LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FTDHKSLKYFFTQKE 255
            +DH+ L++    KE
Sbjct: 573 ASDHQPLRWLHNLKE 587

BLAST of Cmc11g0305421 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.6e-50
Identity = 102/259 (39.38%), Postives = 154/259 (59.46%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +  P+   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPDGSGSFVIYS 180
           +F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DAFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DA    LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FTDHKSLKYFFTQKELNMR 259
            +DH+ L + +  K+ N +
Sbjct: 574 SSDHQPLSWLYRMKDPNSK 592

BLAST of Cmc11g0305421 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-44
Identity = 98/271 (36.16%), Postives = 156/271 (57.56%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           + FGL NA ++F   ++ V RE +     V++DD++I+S+ E++H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           +     K  F+ + V +LG +VSK G   DP K++A+  +  P  V +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPV-LTV 180
            F+++F+ IA P+T + +           K  P  +++   ++FQ L+  L +  V L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGSGSFVIYSDAFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 240
           PD    F + +DA   G+G VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHYLYGEK-IQIFTDHKSLKYFFTQKELNMR 259
           +++LYG + I IFTDH+ L +    +  N +
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAK 579

BLAST of Cmc11g0305421 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 91/274 (33.21%), Postives = 153/274 (55.84%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           L     K  F   QV FLG++V+  G+  DP K+ A++    P++V E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTVP 180
           +F+++++++A PLT LTR              P    +    SF +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSGSFVIYSDAFKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL 240
             +  F + +DA    +G VL Q    + + +AY SR L   E+NY T + E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMR 259
              R YLYG   I+++TDH+ L +    +  N +
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAK 523

BLAST of Cmc11g0305421 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40
Identity = 90/253 (35.57%), Postives = 143/253 (56.52%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           +F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 AFKKGLGCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG- 240
           A    +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIFTDHKSL 247
            E  +I TDH++L
Sbjct: 774 IEPFKILTDHRNL 786

BLAST of Cmc11g0305421 vs. ExPASy TrEMBL
Match: A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 9.7e-144
Identity = 257/259 (99.23%), Postives = 259/259 (100.00%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 688 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 747

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 748 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 807

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSD
Sbjct: 808 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVIYSD 867

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 868 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 927

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 928 TDHKSLKYFFTQKELNMRQ 946

BLAST of Cmc11g0305421 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 9.7e-144
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK
Sbjct: 263 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 322

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 323 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 382

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 383 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 442

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 443 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 502

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 503 TDHKSLKYFFTQKELNMRQ 521

BLAST of Cmc11g0305421 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.2e-143
Identity = 257/259 (99.23%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 933

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 934 TDHKSLKYFFTQKELNMRQ 952

BLAST of Cmc11g0305421 vs. ExPASy TrEMBL
Match: A0A5A7U943 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001930 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.3e-143
Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 0

Query: 1   MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
           MSF LTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK
Sbjct: 73  MSFSLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 132

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
           RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKL+TAPVLTVPDGSGSFVIYSD
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLITAPVLTVPDGSGSFVIYSD 252

Query: 181 AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 253 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 312

Query: 241 TDHKSLKYFFTQKELNMRQ 260
           TDHKSLKYFFTQKELNMRQ
Sbjct: 313 TDHKSLKYFFTQKELNMRQ 331

BLAST of Cmc11g0305421 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.2e-143
Identity = 256/259 (98.84%), Postives = 258/259 (99.61%), Query Frame = 0

Query: 1    MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 60
            MSFGLTNAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 2399 MSFGLTNAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 2458

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR
Sbjct: 2459 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 2518

Query: 121  RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 180
            RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD
Sbjct: 2519 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 2578

Query: 181  AFKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            A KKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF
Sbjct: 2579 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 2638

Query: 241  TDHKSLKYFFTQKELNMRQ 260
            TDHKSLKYFFTQKELNMRQ
Sbjct: 2639 TDHKSLKYFFTQKELNMRQ 2657

BLAST of Cmc11g0305421 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 0

Query: 48  HLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPST 107
           HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPV 167
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W++    +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPDGSGSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0026271.12.0e-14399.61pol protein [Cucumis melo var. makuwa][more]
KAA0053234.12.0e-14399.23DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0048687.14.4e-14399.23pol protein [Cucumis melo var. makuwa][more]
KAA0050009.11.3e-14298.84pol protein [Cucumis melo var. makuwa][more]
KAA0046094.11.7e-14298.84gag protease polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208252.7e-5038.82Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043234.6e-5039.38Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P104012.2e-4436.16Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Q8I7P91.3e-4133.21Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P0CT411.1e-4035.57Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Match NameE-valueIdentityDescription
A0A5A7UDB19.7e-14499.23Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10... [more]
A0A5A7SPZ29.7e-14499.61Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE... [more]
A0A5A7U3302.2e-14399.23Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
A0A5A7U9436.3e-14398.84Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001930 PE... [more]
A0A5A7TSQ88.2e-14398.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
Match NameE-valueIdentityDescription
ATMG00860.11.1e-2745.04DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 92..181
e-value: 1.5E-31
score: 110.2
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..87
e-value: 2.8E-35
score: 123.1
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..81
e-value: 9.3E-17
score: 61.3
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..82
score: 9.654579
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 145..239
e-value: 1.6E-31
score: 108.2
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 91..255
NoneNo IPR availablePANTHERPTHR24559:SF355PROTEIN, PUTATIVE-RELATEDcoord: 91..255
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..82
e-value: 3.02772E-39
score: 132.719
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 176..259
e-value: 3.74284E-41
score: 135.698
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..259

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0305421.1Cmc11g0305421.1mRNA