Cmc11g0304321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0304321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 25857144 .. 25857645 (+)
RNA-Seq Expression	Cmc11g0304321
Synteny	Cmc11g0304321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCGGTTTAACGAATGCGCCAGGTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATGATCAGTTTGTGATTGTGTTCACTGATGATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCTGTAA

mRNA sequence

ATGTCATTCGGTTTAACGAATGCGCCAGGTTTCATGGATCTCATGAACAAGATCTTCCATCAAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCTGTAA

Coding sequence (CDS)

ATGTCATTCGGTTTAACGAATGCGCCAGGTTTCATGGATCTCATGAACAAGATCTTCCATCAAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACATGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAGAAGTAGTATTTTTGGGACATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGATTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTGCTTGGGTTTCAAAGGATACTATAGGCGTTTTATTGAGGATTTCGCTCGATTGGCATTGCCTTTTACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCATAGTACCTATTTTGGCACTTCTGTAA

Protein sequence

MSFGLTNAPGFMDLMNKIFHQESHEEHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL

Homology

[Close]

BLAST of Cmc11g0304321 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 4.3e-66
Identity = 134/168 (79.76%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL 829

[Close]

BLAST of Cmc11g0304321 vs. NCBI nr
Match: TYJ96975.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 132/168 (78.57%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF++LALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL 699

[Close]

BLAST of Cmc11g0304321 vs. NCBI nr
Match: KAA0036001.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 131/169 (77.51%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMD MN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGV VDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL 149
           RFIEDF+RLALP TA+TRKNAKFEWSDKCEQSFQELKKRLV  PILALL
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFEWSDKCEQSFQELKKRLVTAPILALL 251

[Close]

BLAST of Cmc11g0304321 vs. NCBI nr
Match: KAA0038417.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.8e-64
Identity = 130/168 (77.38%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 744 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 803

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 804 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 863

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF++LALP TALTRKNAKFEWSDKC+Q FQELKKRLV  PILAL
Sbjct: 864 RFIEDFSQLALPLTALTRKNAKFEWSDKCKQIFQELKKRLVTAPILAL 911

[Close]

BLAST of Cmc11g0304321 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 129/168 (76.79%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFH                    +ESHEEHLRIVLQTL +KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILAL 500

[Close]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-23
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 27  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTS 86
           HL +VLQ     Q YA   KC F   ++ +LG  HI+S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 87  ATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPI 146
            TE+R  LG  GYYRRF++++ ++  P T L +KN+  +W++    +F+ LK  +  +P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 147 LAL 148
           LAL
Sbjct: 123 LAL 124

[Close]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 0


Query: 1   MSFGLTNAPG---------FMDLMNK---------IFHQESHEEHL---RIVLQTLHDKQ 60
           M FGL NAP             L+NK         I    S  EHL   ++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L  +  KCEF  +E  FLGHIV+  G+  +P KV+AIV++  PT   E+R+ LG  GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCE--QSFQELKKRLVIVPILAL 148
           +FI ++A +A P T+  +K  K + + K E  ++F++LK  ++  PIL L
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQL 501

[Close]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-19
Identity = 56/167 (33.53%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGL NAP  F   MN I                       + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L  +  KCEF  +E  FLGH+++  G+  +P+K+EAI  +  PT   E+++ LG  GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSD-KCEQSFQELKKRLVIVPIL 146
           +FI +FA +A P T   +KN K + ++ + + +F++LK  +   PIL
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPIL 500

[Close]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.9e-18
Identity = 63/178 (35.39%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           + FGL NAP  F  +++ I  +                    ++H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           L     K  F   +V FLG+IV+A G+  DP+KV AI     PTS  E++  LG   YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFARLALPFTALTR---KNAKFEWSDKCE--------QSFQELKKRLVIVPILA 147
           +FI+D+A++A P T LTR    N K   S K          QSF +LK  L    ILA
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILA 427

[Close]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 11  FMDLMNKIFHQESHE-EHLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLGHIVSAKGVSVD 70
           +MD +  I   E H  ++L  V     +  L     KC F++ EV FLGH  + KG+  D
Sbjct: 472 YMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPD 531

Query: 71  PQKVEAIVNWERPTSATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCE 130
            +K + I N+  P  A   R  + F  YYRRFI++FA  +   T L +KN  FEW+D+C+
Sbjct: 532 DKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQ 591

Query: 131 QSFQELKKRLV 141
           ++F  LK +L+
Sbjct: 592 KAFIHLKSQLI 602

[Close]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 134/168 (79.76%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           MSFGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF+RLALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL 829

[Close]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 132/168 (78.57%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF++LALP TALTRKNAKFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL 699

[Close]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL
Match: A0A5A7T306 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00050 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.1e-65
Identity = 131/169 (77.51%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMD MN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGV VDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILALL 149
           RFIEDF+RLALP TA+TRKNAKFEWSDKCEQSFQELKKRLV  PILALL
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFEWSDKCEQSFQELKKRLVTAPILALL 251

[Close]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.3e-64
Identity = 130/168 (77.38%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFHQ--------------------ESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFHQ                    ESHEEHLRIVLQTL DKQ
Sbjct: 744 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 803

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERPTSATEVRS LG  GYYR
Sbjct: 804 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 863

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF++LALP TALTRKNAKFEWSDKC+Q FQELKKRLV  PILAL
Sbjct: 864 RFIEDFSQLALPLTALTRKNAKFEWSDKCKQIFQELKKRLVTAPILAL 911

[Close]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 129/168 (76.79%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MSFGLTNAPG-FMDLMNKIFH--------------------QESHEEHLRIVLQTLHDKQ 60
           M FGLTNAP  FMDLMN+IFH                    +ESHEEHLRIVLQTL +KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKCEFWLEEVVFLGHIVSAKGVSVDPQKVEAIVNWERPTSATEVRSCLGFKGYYR 120
           LYAKFSKCEFWLE+VVFLGH+VSAKGVSVDPQKVEA+VNWERP SATEVRS LG  GYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPILAL 148
           RFIEDF+RLALP TALTRKN KFEWSDKCEQSFQELKKRLV  PILAL
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILAL 908

[Close]

BLAST of Cmc11g0304321 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-24
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 27  HLRIVLQTLHDKQLYAKFSKCEFWLEEVVFLG--HIVSAKGVSVDPQKVEAIVNWERPTS 86
           HL +VLQ     Q YA   KC F   ++ +LG  HI+S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 87  ATEVRSCLGFKGYYRRFIEDFARLALPFTALTRKNAKFEWSDKCEQSFQELKKRLVIVPI 146
            TE+R  LG  GYYRRF++++ ++  P T L +KN+  +W++    +F+ LK  +  +P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 147 LAL 148
           LAL
Sbjct: 123 LAL 124

The following BLAST results are available for this feature:

BLAST of Cmc11g0304321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	4.3e-66	79.76	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
TYJ96975.1	4.7e-65	78.57	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0036001.1	1.1e-64	77.51	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 D...	[more]
KAA0038417.1	6.8e-64	77.38	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	2.0e-63	76.79	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0304321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92523	6.1e-23	41.46	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P20825	1.1e-19	37.65	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.1e-19	33.53	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	5.9e-18	35.39	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10394	3.8e-17	36.64	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc11g0304321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	2.1e-66	79.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BEU1	2.3e-65	78.57	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T306	5.1e-65	77.51	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TA17	3.3e-64	77.38	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2V7	9.6e-64	76.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of Cmc11g0304321 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.3e-24	41.46	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 71..148 e-value: 1.0E-27 score: 97.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 11..68 e-value: 3.0E-13 score: 52.1
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 24..141
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 24..141
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0304321.1	Cmc11g0304321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding