Cmc11g0303901 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0303901
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposon Tf2-9 polyprotein
LocationCMiso1.1chr11: 25474579 .. 25475337 (+)
RNA-Seq ExpressionCmc11g0303901
SyntenyCmc11g0303901
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAATTGGTGGAAGAAATGCTAACATCGAGGGTAATACGGCCGAGCAAAAGTCCTTATTCCAACCCGGTATTACTTGTCAAGAAGAAGGATGGAAGCTGGAGGTTTTGTGTGGATTACCGGACAGTCAATAATGCAACTATTCCGGATAAGTTTCCAATTCCCGTGGTGGAGGAACTTTTTGATGAGTTGAATGGGGCCACCTTGTTCTCAAAAATTGATCTCAAATCCGGTTATCATCAAATAAGGATGGAGGAGAAGGATATTCCGAAAACAGCCTTCAGAACGCATGAAGGACATTATGAGTTTCTTGTCATGCCGTTTGGGTTGACTAATGTCCCGGCTACTTTTCAAGCCTTGATGAATAATGTCTTCAAACCTTATTTGAGGAAGTTTGTCTTAGTATTTTTTGATGATATTCTGATTTACAACAAGAATGAGGAAGAGCATATGAGCCATTTGGGAATAGTTTTTTCAGCCTTGAGGGAACATACGTTATATGCTAATAGAAAAAAGTGCAGTTTTGCCCAATCGAGGATTGAATATTTGGGGCATATAATATCAGGAGGAGGTGTAGAAGTGGATCCGGAGAAAATTCGTTCCATTGCTAACTGGCCAGTTCCGAAAAATGCTAGAGAAATCCGGGGGTTTCTTGGCCTAACCGGGTATTATCGACGATTTGTGCAACATTATGGTTCTATGGCAGCACCACTAACACAGCTACTTAAAAAATGGGGGGTTTATATGGAACGTTGA

mRNA sequence

ATGGAAAAATTGGTGGAAGAAATGCTAACATCGAGGGTAATACGGCCGAGCAAAAGTCCTTATTCCAACCCGGTATTACTTGTCAAGAAGAAGGATGGAAGCTGGAGGTTTTGTGTGGATTACCGGACAGTCAATAATGCAACTATTCCGGATAAGTTTCCAATTCCCGTGGTGGAGGAACTTTTTGATGAGTTGAATGGGGCCACCTTGTTCTCAAAAATTGATCTCAAATCCGGTTATCATCAAATAAGGATGGAGGAGAAGGATATTCCGAAAACAGCCTTCAGAACGCATGAAGGACATTATGAGTTTCTTGTCATGCCGTTTGGGTTGACTAATGTCCCGGCTACTTTTCAAGCCTTGATGAATAATGTCTTCAAACCTTATTTGAGGAAGTTTGTCTTAGTATTTTTTGATGATATTCTGATTTACAACAAGAATGAGGAAGAGCATATGAGCCATTTGGGAATAGTTTTTTCAGCCTTGAGGGAACATACGTTATATGCTAATAGAAAAAAGTGCAGTTTTGCCCAATCGAGGATTGAATATTTGGGGCATATAATATCAGGAGGAGGTGTAGAAGTGGATCCGGAGAAAATTCGTTCCATTGCTAACTGGCCAGTTCCGAAAAATGCTAGAGAAATCCGGGGGTTTCTTGGCCTAACCGGGTATTATCGACGATTTGTGCAACATTATGGTTCTATGGCAGCACCACTAACACAGCTACTTAAAAAATGGGGGGTTTATATGGAACGTTGA

Coding sequence (CDS)

ATGGAAAAATTGGTGGAAGAAATGCTAACATCGAGGGTAATACGGCCGAGCAAAAGTCCTTATTCCAACCCGGTATTACTTGTCAAGAAGAAGGATGGAAGCTGGAGGTTTTGTGTGGATTACCGGACAGTCAATAATGCAACTATTCCGGATAAGTTTCCAATTCCCGTGGTGGAGGAACTTTTTGATGAGTTGAATGGGGCCACCTTGTTCTCAAAAATTGATCTCAAATCCGGTTATCATCAAATAAGGATGGAGGAGAAGGATATTCCGAAAACAGCCTTCAGAACGCATGAAGGACATTATGAGTTTCTTGTCATGCCGTTTGGGTTGACTAATGTCCCGGCTACTTTTCAAGCCTTGATGAATAATGTCTTCAAACCTTATTTGAGGAAGTTTGTCTTAGTATTTTTTGATGATATTCTGATTTACAACAAGAATGAGGAAGAGCATATGAGCCATTTGGGAATAGTTTTTTCAGCCTTGAGGGAACATACGTTATATGCTAATAGAAAAAAGTGCAGTTTTGCCCAATCGAGGATTGAATATTTGGGGCATATAATATCAGGAGGAGGTGTAGAAGTGGATCCGGAGAAAATTCGTTCCATTGCTAACTGGCCAGTTCCGAAAAATGCTAGAGAAATCCGGGGGTTTCTTGGCCTAACCGGGTATTATCGACGATTTGTGCAACATTATGGTTCTATGGCAGCACCACTAACACAGCTACTTAAAAAATGGGGGGTTTATATGGAACGTTGA

Protein sequence

MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEELFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQALMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSRIEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLTQLLKKWGVYMER
Homology
BLAST of Cmc11g0303901 vs. NCBI nr
Match: KAA0033505.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK26821.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 511.9 bits (1317), Expect = 3.1e-141
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS VIRPSKSPYSNPVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPVVEE
Sbjct: 253 MEKLVEEMLTSGVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 312

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVP TFQA
Sbjct: 313 LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPDTFQA 372

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR
Sbjct: 373 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 432

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISGGGVEVDPEKIRSIANWPVP+NAREI GFLGLTGYYRRFVQHYGSMAAPLT
Sbjct: 433 IEYLGHIISGGGVEVDPEKIRSIANWPVPENAREIWGFLGLTGYYRRFVQHYGSMAAPLT 492

Query: 241 QLLKKWGVYMER 253
           QLLKKWGVYMER
Sbjct: 493 QLLKKWGVYMER 504

BLAST of Cmc11g0303901 vs. NCBI nr
Match: KAA0040958.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK20299.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.7e-127
Identity = 220/247 (89.07%), Postives = 234/247 (94.74%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS VIRP KSPYS+PVLLVKKKDGSWRFCVDYR VNNAT+PDKFPI VVEE
Sbjct: 427 MEKLVEEMLTSGVIRPRKSPYSSPVLLVKKKDGSWRFCVDYRAVNNATVPDKFPISVVEE 486

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSK DLKSGYHQIRMEEKDIPKTAFRTHEGHY+FLVMPFGLTN PATFQA
Sbjct: 487 LFDELNGASLFSKNDLKSGYHQIRMEEKDIPKTAFRTHEGHYKFLVMPFGLTNAPATFQA 546

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVF+PYLRKFVLVFFDDIL+Y+KNEEEHM+HLG + S LREHTLYAN+KKCSFAQS+
Sbjct: 547 LMNNVFRPYLRKFVLVFFDDILVYSKNEEEHMNHLGKILSTLREHTLYANKKKCSFAQSK 606

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISGGGVEVDPEKIRSIA+WP+P N REI GFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 607 IEYLGHIISGGGVEVDPEKIRSIADWPIPTNVREIWGFLGLTGYYRRFVQHYGSIAAPLT 666

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 667 QLLKKGG 673

BLAST of Cmc11g0303901 vs. NCBI nr
Match: KAA0032313.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99432.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 461.1 bits (1185), Expect = 6.3e-126
Identity = 219/247 (88.66%), Postives = 234/247 (94.74%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS +IRPSKSPYS+PVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPVVEE
Sbjct: 111 MEKLVEEMLTSGIIRPSKSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 170

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSKIDLKSGYHQIRMEEKDIPKTAFRTH G+YEFLVMPFGLTN PATFQ 
Sbjct: 171 LFDELNGASLFSKIDLKSGYHQIRMEEKDIPKTAFRTHGGYYEFLVMPFGLTNAPATFQP 230

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIY+KNEEEH SHLGIV SALRE++LYAN+KKCSFAQ R
Sbjct: 231 LMNNVFKPYLRKFVLVFFDDILIYSKNEEEHKSHLGIVLSALREYSLYANKKKCSFAQPR 290

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISG G+EVDPEKI SIA+WP+PK  +E++GFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 291 IEYLGHIISGEGIEVDPEKICSIADWPIPKTVKEVKGFLGLTGYYRRFVQHYGSIAAPLT 350

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 351 QLLKKGG 357

BLAST of Cmc11g0303901 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 454.9 bits (1169), Expect = 4.5e-124
Identity = 216/245 (88.16%), Postives = 230/245 (93.88%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS +IRPSKSPYS+PVLLVKKKDGSWRFCV YR VNNATIPDKFPIPVVEE
Sbjct: 391 MEKLVEEMLTSGIIRPSKSPYSSPVLLVKKKDGSWRFCVYYRAVNNATIPDKFPIPVVEE 450

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSKIDLKSGYHQIRMEEKD+ KT FRTHEGHYEFLVMPFGLTN P TFQA
Sbjct: 451 LFDELNGASLFSKIDLKSGYHQIRMEEKDVLKTTFRTHEGHYEFLVMPFGLTNAPVTFQA 510

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIY+KNE+EH SHLGIV S LRE++LYAN+KKCSFAQ R
Sbjct: 511 LMNNVFKPYLRKFVLVFFDDILIYSKNEKEHKSHLGIVLSTLREYSLYANKKKCSFAQPR 570

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISG GVEVDPEKIRSIA+WP+PK  +E+RGFLGL GYYRRFVQHYGS+AAPLT
Sbjct: 571 IEYLGHIISGEGVEVDPEKIRSIADWPIPKTVKEVRGFLGLIGYYRRFVQHYGSIAAPLT 630

Query: 241 QLLKK 246
           QLLKK
Sbjct: 631 QLLKK 635

BLAST of Cmc11g0303901 vs. NCBI nr
Match: TYK02195.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.5 bits (1116), Expect = 6.3e-118
Identity = 200/247 (80.97%), Postives = 228/247 (92.31%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           ME+LVEEML S +IRPS SP+S+PVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPV EE
Sbjct: 654 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 713

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGAT+FSKIDLKSGYHQIRM +KDIPKTAFRTHEGHYEFLVMPFGLTN PATFQA
Sbjct: 714 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 773

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMN++F+P+LRKFVLVFFDDILIY+KNE++H+ H+  VF ALR+H+L+AN+KKC+F Q +
Sbjct: 774 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 833

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           +EYLGHIISG GVEVD EKI+++A+WP P N RE+RGFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 834 VEYLGHIISGEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLT 893

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 894 QLLKKGG 900

BLAST of Cmc11g0303901 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.4e-64
Identity = 112/250 (44.80%), Postives = 164/250 (65.60%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKD-----GSWRFCVDYRTVNNATIPDKFPI 60
           +E  V+EML   +IR S SPY++P  +V KK        +R  +DYR +N  TIPD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PVVEELFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVP 120
           P ++E+  +L     F+ IDL  G+HQI M+E+ I KTAF T  GHYE+L MPFGL N P
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 ATFQALMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCS 180
           ATFQ  MNN+ +P L K  LV+ DDI+I++ +  EH++ + +VF+ L +  L     KC 
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

Query: 181 FAQSRIEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSM 240
           F +    +LGHI++  G++ +P K+++I ++P+P   +EIR FLGLTGYYR+F+ +Y  +
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461

Query: 241 AAPLTQLLKK 246
           A P+T  LKK
Sbjct: 462 AKPMTSCLKK 471

BLAST of Cmc11g0303901 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-62
Identity = 107/250 (42.80%), Postives = 165/250 (66.00%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLV-KKKDGS----WRFCVDYRTVNNATIPDKFPI 60
           +E  +++ML   +IR S SPY++P+ +V KK+D S    +R  +DYR +N  T+ D+ PI
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PVVEELFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVP 120
           P ++E+  +L     F+ IDL  G+HQI M+ + + KTAF T  GHYE+L MPFGL N P
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 121 ATFQALMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCS 180
           ATFQ  MN++ +P L K  LV+ DDI++++ + +EH+  LG+VF  L +  L     KC 
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402

Query: 181 FAQSRIEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSM 240
           F +    +LGH+++  G++ +PEKI +I  +P+P   +EI+ FLGLTGYYR+F+ ++  +
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462

Query: 241 AAPLTQLLKK 246
           A P+T+ LKK
Sbjct: 463 AKPMTKCLKK 472

BLAST of Cmc11g0303901 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.6e-60
Identity = 102/254 (40.16%), Postives = 169/254 (66.54%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKK-----DGSWRFCVDYRTVNNATIPDKFPI 60
           +E+ ++E+L   +IRPS SPY++P+ +V KK     +  +R  VD++ +N  TIPD +PI
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198

Query: 61  PVVEELFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVP 120
           P +      L  A  F+ +DL SG+HQI M+E DIPKTAF T  G YEFL +PFGL N P
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

Query: 121 ATFQALMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCS 180
           A FQ +++++ + ++ K   V+ DDI++++++ + H  +L +V ++L +  L  N +K  
Sbjct: 259 AIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSH 318

Query: 181 FAQSRIEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSM 240
           F  +++E+LG+I++  G++ DP+K+R+I+  P P + +E++ FLG+T YYR+F+Q Y  +
Sbjct: 319 FLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKV 378

Query: 241 AAPLTQLLKKWGVY 250
           A PLT L +  G+Y
Sbjct: 379 AKPLTNLTR--GLY 390

BLAST of Cmc11g0303901 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-58
Identity = 108/239 (45.19%), Postives = 153/239 (64.02%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           + K+V+++L ++ I PSKSP S+PV+LV KKDG++R CVDYRT+N ATI D FP+P ++ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           L   +  A +F+ +DL SGYHQI ME KD  KTAF T  G YE+ VMPFGL N P+TF  
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
            M + F+    +FV V+ DDILI++++ EEH  HL  V   L+   L   +KKC FA   
Sbjct: 732 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 791

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPL 240
            E+LG+ I    +     K  +I ++P PK  ++ + FLG+  YYRRF+ +   +A P+
Sbjct: 792 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI 848

BLAST of Cmc11g0303901 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 2.0e-58
Identity = 108/239 (45.19%), Postives = 153/239 (64.02%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           + K+V+++L ++ I PSKSP S+PV+LV KKDG++R CVDYRT+N ATI D FP+P ++ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           L   +  A +F+ +DL SGYHQI ME KD  KTAF T  G YE+ VMPFGL N P+TF  
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
            M + F+    +FV V+ DDILI++++ EEH  HL  V   L+   L   +KKC FA   
Sbjct: 758 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 817

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPL 240
            E+LG+ I    +     K  +I ++P PK  ++ + FLG+  YYRRF+ +   +A P+
Sbjct: 818 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI 874

BLAST of Cmc11g0303901 vs. ExPASy TrEMBL
Match: A0A5D3DST3 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00090 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.5e-141
Identity = 247/252 (98.02%), Postives = 248/252 (98.41%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS VIRPSKSPYSNPVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPVVEE
Sbjct: 253 MEKLVEEMLTSGVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 312

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVP TFQA
Sbjct: 313 LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPDTFQA 372

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR
Sbjct: 373 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 432

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISGGGVEVDPEKIRSIANWPVP+NAREI GFLGLTGYYRRFVQHYGSMAAPLT
Sbjct: 433 IEYLGHIISGGGVEVDPEKIRSIANWPVPENAREIWGFLGLTGYYRRFVQHYGSMAAPLT 492

Query: 241 QLLKKWGVYMER 253
           QLLKKWGVYMER
Sbjct: 493 QLLKKWGVYMER 504

BLAST of Cmc11g0303901 vs. ExPASy TrEMBL
Match: A0A5D3D9X2 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00270 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 220/247 (89.07%), Postives = 234/247 (94.74%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS VIRP KSPYS+PVLLVKKKDGSWRFCVDYR VNNAT+PDKFPI VVEE
Sbjct: 427 MEKLVEEMLTSGVIRPRKSPYSSPVLLVKKKDGSWRFCVDYRAVNNATVPDKFPISVVEE 486

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSK DLKSGYHQIRMEEKDIPKTAFRTHEGHY+FLVMPFGLTN PATFQA
Sbjct: 487 LFDELNGASLFSKNDLKSGYHQIRMEEKDIPKTAFRTHEGHYKFLVMPFGLTNAPATFQA 546

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVF+PYLRKFVLVFFDDIL+Y+KNEEEHM+HLG + S LREHTLYAN+KKCSFAQS+
Sbjct: 547 LMNNVFRPYLRKFVLVFFDDILVYSKNEEEHMNHLGKILSTLREHTLYANKKKCSFAQSK 606

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISGGGVEVDPEKIRSIA+WP+P N REI GFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 607 IEYLGHIISGGGVEVDPEKIRSIADWPIPTNVREIWGFLGLTGYYRRFVQHYGSIAAPLT 666

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 667 QLLKKGG 673

BLAST of Cmc11g0303901 vs. ExPASy TrEMBL
Match: A0A5A7SPK3 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00210 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.0e-126
Identity = 219/247 (88.66%), Postives = 234/247 (94.74%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS +IRPSKSPYS+PVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPVVEE
Sbjct: 111 MEKLVEEMLTSGIIRPSKSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 170

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSKIDLKSGYHQIRMEEKDIPKTAFRTH G+YEFLVMPFGLTN PATFQ 
Sbjct: 171 LFDELNGASLFSKIDLKSGYHQIRMEEKDIPKTAFRTHGGYYEFLVMPFGLTNAPATFQP 230

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIY+KNEEEH SHLGIV SALRE++LYAN+KKCSFAQ R
Sbjct: 231 LMNNVFKPYLRKFVLVFFDDILIYSKNEEEHKSHLGIVLSALREYSLYANKKKCSFAQPR 290

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISG G+EVDPEKI SIA+WP+PK  +E++GFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 291 IEYLGHIISGEGIEVDPEKICSIADWPIPKTVKEVKGFLGLTGYYRRFVQHYGSIAAPLT 350

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 351 QLLKKGG 357

BLAST of Cmc11g0303901 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.2e-124
Identity = 216/245 (88.16%), Postives = 230/245 (93.88%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           MEKLVEEMLTS +IRPSKSPYS+PVLLVKKKDGSWRFCV YR VNNATIPDKFPIPVVEE
Sbjct: 391 MEKLVEEMLTSGIIRPSKSPYSSPVLLVKKKDGSWRFCVYYRAVNNATIPDKFPIPVVEE 450

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGA+LFSKIDLKSGYHQIRMEEKD+ KT FRTHEGHYEFLVMPFGLTN P TFQA
Sbjct: 451 LFDELNGASLFSKIDLKSGYHQIRMEEKDVLKTTFRTHEGHYEFLVMPFGLTNAPVTFQA 510

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMNNVFKPYLRKFVLVFFDDILIY+KNE+EH SHLGIV S LRE++LYAN+KKCSFAQ R
Sbjct: 511 LMNNVFKPYLRKFVLVFFDDILIYSKNEKEHKSHLGIVLSTLREYSLYANKKKCSFAQPR 570

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           IEYLGHIISG GVEVDPEKIRSIA+WP+PK  +E+RGFLGL GYYRRFVQHYGS+AAPLT
Sbjct: 571 IEYLGHIISGEGVEVDPEKIRSIADWPIPKTVKEVRGFLGLIGYYRRFVQHYGSIAAPLT 630

Query: 241 QLLKK 246
           QLLKK
Sbjct: 631 QLLKK 635

BLAST of Cmc11g0303901 vs. ExPASy TrEMBL
Match: A0A5D3BSP2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00980 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.0e-118
Identity = 200/247 (80.97%), Postives = 228/247 (92.31%), Query Frame = 0

Query: 1   MEKLVEEMLTSRVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRTVNNATIPDKFPIPVVEE 60
           ME+LVEEML S +IRPS SP+S+PVLLVKKKDGSWRFCVDYR VNNATIPDKFPIPV EE
Sbjct: 654 MERLVEEMLASGIIRPSNSPFSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVAEE 713

Query: 61  LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPATFQA 120
           LFDELNGAT+FSKIDLKSGYHQIRM +KDIPKTAFRTHEGHYEFLVMPFGLTN PATFQA
Sbjct: 714 LFDELNGATVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQA 773

Query: 121 LMNNVFKPYLRKFVLVFFDDILIYNKNEEEHMSHLGIVFSALREHTLYANRKKCSFAQSR 180
           LMN++F+P+LRKFVLVFFDDILIY+KNE++H+ H+  VF ALR+H+L+AN+KKC+F Q +
Sbjct: 774 LMNSIFRPFLRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKK 833

Query: 181 IEYLGHIISGGGVEVDPEKIRSIANWPVPKNAREIRGFLGLTGYYRRFVQHYGSMAAPLT 240
           +EYLGHIISG GVEVD EKI+++A+WP P N RE+RGFLGLTGYYRRFVQHYGS+AAPLT
Sbjct: 834 VEYLGHIISGEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLT 893

Query: 241 QLLKKWG 248
           QLLKK G
Sbjct: 894 QLLKKGG 900

BLAST of Cmc11g0303901 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-30
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 0

Query: 152 MSHLGIVFSALREHTLYANRKKCSFAQSRIEYLG--HIISGGGVEVDPEKIRSIANWPVP 211
           M+HLG+V     +H  YANRKKC+F Q +I YLG  HIISG GV  DP K+ ++  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 212 KNAREIRGFLGLTGYYRRFVQHYGSMAAPLTQLLKK 246
           KN  E+RGFLGLTGYYRRFV++YG +  PLT+LLKK
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

BLAST of Cmc11g0303901 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 6.9e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 7  EMLTSRVIRPSKSPYSNPVLLVKKKDGSW 36
          EML +R+I+PS SPYS+PVLLV+KKDG W
Sbjct: 51 EMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033505.13.1e-14198.02peroxidase 64 [Cucumis melo var. makuwa] >TYK26821.1 peroxidase 64 [Cucumis melo... [more]
KAA0040958.15.7e-12789.07peroxidase 64 [Cucumis melo var. makuwa] >TYK20299.1 peroxidase 64 [Cucumis melo... [more]
KAA0032313.16.3e-12688.66Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99432.1 Tran... [more]
TYJ98385.14.5e-12488.16retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa][more]
TYK02195.16.3e-11880.97Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208252.4e-6444.80Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043231.7e-6242.80Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P93.6e-6040.16Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Q993152.0e-5845.19Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG52.0e-5845.19Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5D3DST31.5e-14198.02Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00090 ... [more]
A0A5D3D9X22.7e-12789.07Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00270 ... [more]
A0A5A7SPK33.0e-12688.66Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BJ442.2e-12488.16Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BSP23.0e-11880.97Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
ATMG00860.12.4e-3060.42DNA/RNA polymerases superfamily protein [more]
ATMG00850.16.9e-0672.41DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 53..188
e-value: 1.6E-84
score: 284.5
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 197..251
e-value: 1.6E-16
score: 62.0
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 28..188
e-value: 6.2E-32
score: 110.9
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 9..188
score: 17.87468
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..113
e-value: 1.6E-84
score: 284.5
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 12..245
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 12..245
NoneNo IPR availableCDDcd01647RT_LTRcoord: 13..188
e-value: 3.8002E-100
score: 287.569
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..245

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0303901.1Cmc11g0303901.1mRNA