Cmc11g0303681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0303681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr11: 25181132 .. 25182025 (-)
RNA-Seq Expression	Cmc11g0303681
Synteny	Cmc11g0303681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAACAAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTGGAATATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATCAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTACGAATGAAGCGTTCATTTCTAAGAATGATGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTTTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCGATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTAGACATGGTTCTTTCAATGATGAGTTACGCTTAA

mRNA sequence

ATGACACTCAAGGTTGGAACAAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTGGAATATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATCAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTACGAATGAAGCGTTCATTTCTAAGAATGATGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTTTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCGATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTAGACATGGTTCTTTCAATGATGAGTTACGCTTAA

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACAAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTGGAATATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATCAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTACGAATGAAGCGTTCATTTCTAAGAATGATGTACATATTTGTTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCAGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTTTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCGATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAAGAGAAATAGAACCTTGTTAGACATGGTTCTTTCAATGATGAGTTACGCTTAA

Protein sequence

MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSTNEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA

Homology

[Close]

BLAST of Cmc11g0303681 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 558.5 bits (1438), Expect = 3.4e-155
Identity = 282/297 (94.95%), Postives = 285/297 (95.96%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTLKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFS 
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFI KN VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKL+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc11g0303681 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 549.7 bits (1415), Expect = 1.6e-152
Identity = 278/297 (93.60%), Postives = 282/297 (94.95%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTLKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFS 
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFI KN VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVK+GLLNKL+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
            RSDRGGEYMDL FQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc11g0303681 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 547.0 bits (1408), Expect = 1.0e-151
Identity = 275/296 (92.91%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           M LKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FS 
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFISKN VHICS KLE+NLYVL+PNE KAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKLEDDSLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSY 297
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSY
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSY 500

[Close]

BLAST of Cmc11g0303681 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 531.9 bits (1369), Expect = 3.4e-147
Identity = 272/297 (91.58%), Postives = 276/297 (92.93%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTL VGT DVISARAVGD KLF   KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFS 
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFISKN      AKLE+NLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 268 NEAFISKN-----GAKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRL HINLD+IGRLVKNGLLNKL+DDSLPPCES LEGKMTKRPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVEN LSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 499

[Close]

BLAST of Cmc11g0303681 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121
Identity = 222/297 (74.75%), Postives = 256/297 (86.20%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MT++VGT  VISA AVG  +L L+  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F+ 
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           N+ FI KN V ICSAKLENNLYVLR   +KA+LN EMF+TA TQNKR +IS   N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINL++I RLVKNGLL++LE++SLP CES LEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFI+F DDYSRYGY+YLM+HKSEALEKFKEYK EVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
            RSDRGGEYMDL+FQ+Y++E GI SQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 632

[Close]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-37
Identity = 92/297 (30.98%), Postives = 156/297 (52.53%), Query Frame = 0


Query: 2   TLKVGTRDVISARAVGDAKLFLEYK-FMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 61
           T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 121
            +  ++K  + I        LY       +  LN            +  IS++    LWH
Sbjct: 381 QKWRLTKGSLVIAKGVARGTLYRTNAEICQGELN----------AAQDEISVD----LWH 440

Query: 122 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 181
            R+GH++   +  L K  L++  +  ++ PC+  L GK  +  F     R    L+L++S
Sbjct: 441 KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 500

Query: 182 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 241
           D+CGPM +++ GG +YF++FIDD SR  ++Y+++ K +  + F+++   VE    +K+K 
Sbjct: 501 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 560

Query: 242 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           LRSD GGEY    F++Y   HGI+ + + PGTPQ NGV+E+ NRT+++ V SM+  A
Sbjct: 561 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

[Close]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-26
Identity = 86/277 (31.05%), Postives = 139/277 (50.18%), Query Frame = 0


Query: 30  LENLYIVPKIKRNLVSVSCLIEHMYSINFSTNEAFISKNDVHIC-SAKLENNLYVLRPNE 89
           LE++    +   NL+SV  L E   SI F  +   ISKN + +  ++ + NN+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKAVLNHEMFRTANTQNKRQRISLNNNTYLWHLRLGHINLDQIGRLVK------NGLLNK 149
              V+N + + + N ++K       NN  LWH R GHI+  ++  + +        LLN 
Sbjct: 405 --PVINFQAY-SINAKHK-------NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LEDDSLPPCESFLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFISF 209
           LE  S   CE  L GK  + PF     +   K PL ++HSD+CGP+         YF+ F
Sbjct: 465 LE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKILRSDRGGEYMDLRFQDYMIE 269
           +D ++ Y   YL+++KS+    F+++  + E   + K+  L  D G EY+    + + ++
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 584

Query: 270 HGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
            GI   L+ P TPQ NGVSE+  RT+ +   +M+S A
Sbjct: 585 KGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGA 603

[Close]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-26
Identity = 89/285 (31.23%), Postives = 147/285 (51.58%), Query Frame = 0


Query: 17  GDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINF--STNEAFISKNDVHIC 76
           G A L    + + L  +  VP I +NL+SV  L   +  S+ F  ++ +       V + 
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLL 412

Query: 77  SAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWHLRLGHINLDQIGR 136
             K ++ LY      ++AV    MF  A+  +K    S       WH RLGH +L  +  
Sbjct: 413 QGKTKDELYEWPIASSQAV---SMF--ASPCSKATHSS-------WHSRLGHPSLAILNS 472

Query: 137 LVKNGLLNKLE-DDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG 196
           ++ N  L  L     L  C      K  K PF+     + +PLE I+SD+     + +  
Sbjct: 473 VISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSID 532

Query: 197 GFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKILRSDRGGEYMDL 256
            + Y++ F+D ++RY +LY ++ KS+  + F  +K+ VENR   +I  L SD GGE++ L
Sbjct: 533 NYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVL 592

Query: 257 RFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           R  DY+ +HGI    S P TP+ NG+SE+++R +++M L+++S+A
Sbjct: 593 R--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 622

[Close]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.2e-23
Identity = 81/285 (28.42%), Postives = 138/285 (48.42%), Query Frame = 0


Query: 17  GDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINF--STNEAFISKNDVHIC 76
           G   L  + + + L N+  VP I +NL+SV  L   +  S+ F  ++ +       V + 
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLL 433

Query: 77  SAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWHLRLGHINLDQIGR 136
             K ++ LY     E     +  +   A+  +K    S       WH RLGH     +  
Sbjct: 434 QGKTKDELY-----EWPIASSQPVSLFASPSSKATHSS-------WHARLGHPAPSILNS 493

Query: 137 LVKNGLLNKLE-DDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG 196
           ++ N  L+ L        C   L  K  K PF+     +  PLE I+SD+     + +  
Sbjct: 494 VISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHD 553

Query: 197 GFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKILRSDRGGEYMDL 256
            + Y++ F+D ++RY +LY ++ KS+  E F  +K  +ENR   +I    SD GGE++ L
Sbjct: 554 NYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL 613

Query: 257 RFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
              +Y  +HGI    S P TP+ NG+SE+++R +++  L+++S+A
Sbjct: 614 --WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 643

[Close]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.9e-14
Identity = 50/183 (27.32%), Postives = 87/183 (47.54%), Query Frame = 0


Query: 120 HLRLGHINLDQIGRLVKNGLLNKLEDDSLP-------PCESFLEGKMTKRPFTGKGYRAK 179
           H  L H N   I   +KN  +    +  +         C   L GK TK     KG R K
Sbjct: 599 HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHI-KGSRLK 658

Query: 180 -----EPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE--ALEKFKE 239
                EP + +H+D+ GP++   +    YFISF D+ +++ ++Y +  + E   L+ F  
Sbjct: 659 YQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 718

Query: 240 YKTEVENRLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRT 289
               ++N+    + +++ DRG EY +     ++ ++GI    +     + +GV+E+ NRT
Sbjct: 719 ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRT 778

[Close]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.6e-155
Identity = 282/297 (94.95%), Postives = 285/297 (95.96%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTLKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFS 
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFI KN VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKL+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 7.6e-153
Identity = 278/297 (93.60%), Postives = 282/297 (94.95%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTLKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFS 
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFI KN VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVK+GLLNKL+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
            RSDRGGEYMDL FQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 5.0e-152
Identity = 275/296 (92.91%), Postives = 281/296 (94.93%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           M LKVGT DVISARAVGDAKLF   KFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FS 
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFISKN VHICS KLE+NLYVL+PNE KAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKLEDDSLPPCES LEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVEN LSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSY 297
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSY
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSY 500

[Close]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.7e-147
Identity = 272/297 (91.58%), Postives = 276/297 (92.93%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MTL VGT DVISARAVGD KLF   KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFS 
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           NEAFISKN      AKLE+NLYVLRPNEAKAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 268 NEAFISKN-----GAKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRL HINLD+IGRLVKNGLLNKL+DDSLPPCES LEGKMTKRPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVEN LSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 499

[Close]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.3e-122
Identity = 222/297 (74.75%), Postives = 256/297 (86.20%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFLEYKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFST 60
           MT++VGT  VISA AVG  +L L+  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F+ 
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNDVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISLNNNTYLWH 120
           N+ FI KN V ICSAKLENNLYVLR   +KA+LN EMF+TA TQNKR +IS   N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINL++I RLVKNGLL++LE++SLP CES LEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENRLSKKIKI 240
           DLCGPMNVKARGGFEYFI+F DDYSRYGY+YLM+HKSEALEKFKEYK EVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSEKRNRTLLDMVLSMMSYA 298
            RSDRGGEYMDL+FQ+Y++E GI SQLSAPGTPQQNGVSE+RNRTLLDMV SMMSYA
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYA 632

[Close]

BLAST of Cmc11g0303681 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-07
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 114 NNTYLWHLRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFTGKGYRAKE 173
           + T LWH RL H++   +  LVK G L+  +  SL  CE  + GK  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 174 PLELIHSDLCGPMNV 189
           PL+ +HSDL G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc11g0303681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	3.4e-155	94.95	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	1.6e-152	93.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	1.0e-151	92.91	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	3.4e-147	91.58	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046415.1	1.1e-121	74.75	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0303681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-37	30.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.4e-26	31.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.1e-26	31.23	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.2e-23	28.42	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12490	7.9e-14	27.32	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of Cmc11g0303681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.6e-155	94.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	7.6e-153	93.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	5.0e-152	92.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	1.7e-147	91.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7TYF5	5.3e-122	74.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]

BLAST of Cmc11g0303681 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	1.1e-07	37.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 81..159 e-value: 8.1E-11 score: 41.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 172..273 e-value: 2.5E-13 score: 50.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 170..297 score: 21.037159
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 167..297 e-value: 1.4E-29 score: 104.8
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 169..284
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 169..284
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 169..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0303681.1	Cmc11g0303681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding