Cmc11g0302371 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0302371
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr11: 23279785 .. 23280436 (+)
RNA-Seq Expression	Cmc11g0302371
Synteny	Cmc11g0302371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGGTAACAAGTAAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTGACTATATTTCACCTTTACGTACATCGCACTTAATTCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTTTTGGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCCGCAGCAGACTCGCAGATCCTATGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

mRNA sequence

ATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTTTTGGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCCGCAGCAGACTCGCAGATCCTATGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Coding sequence (CDS)

ATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTTTTGGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCACCGGTTGGGAAGGATCCGCAGCAGACTCGCAGATCCTATGTGATGCGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Protein sequence

MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKGISSL

Homology

[Close]

BLAST of Cmc11g0302371 vs. NCBI nr
Match: KAA0054567.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 6.4e-93
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV
Sbjct: 26  MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG
Sbjct: 146 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADSQIL DAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRP PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+IL DAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 5.8e-86
Identity = 163/172 (94.77%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MI+ SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP PNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+IL DAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. NCBI nr
Match: KAA0043157.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 166/186 (89.25%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGP--------------NCLGALDGTY 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP P              NCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 121 IKVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENG 173
           IKVNVPAGDRPTFRTRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+ILCDAISRENG
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDAISRENG 205

[Close]

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL
Match: A0A5A7UJ20 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003590 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.1e-93
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV
Sbjct: 26  MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG
Sbjct: 146 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.7e-88
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADSQIL DAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEEL+KRP PNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+IL DAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 163/172 (94.77%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MI+ SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP PNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVPKG 173
           TRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+IL DAISRENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL
Match: A0A5A7TMY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00200 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.2e-86
Identity = 166/186 (89.25%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGP--------------NCLGALDGTY 120
           IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRP P              NCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 121 IKVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENG 173
           IKVNVPAGDRPTFRTRKG+IATNVLGVCDTKGDFVYVL GWEGSAADS+ILCDAISRENG
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDAISRENG 205

[Close]

BLAST of Cmc11g0302371 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-28
Identity = 67/185 (36.22%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 1   MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 60
           +++G +  C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++   
Sbjct: 34  ILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRA 93

Query: 61  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPN-------------CLGALDGTYI 120
           +Q  F  SGET+SRHFN VL AV+ + ++   +P  N             C+G +D  +I
Sbjct: 94  VQELFCYSGETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSFHI 153

Query: 121 KVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGL 173
            V V   ++  FR   G +  NVL        F YVL GWEGSA+D Q+L  A++R N L
Sbjct: 154 PVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKL 213

[Close]

BLAST of Cmc11g0302371 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-15
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 97  NCLGALDGTYIKVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQI 156
           +C+GA+D T+I   V     P+FR RKG I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 157 LCDAISR-ENGLQVPK 172
           L DA++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc11g0302371 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14
Identity = 52/183 (28.42%), Postives = 79/183 (43.17%), Query Frame = 0


Query: 9   CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 68
           C Q  RM    F  LC++L+    L  T  + +EE VAMFL +  H+     +   F R+
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 69  GETVSRHFNIVLLAVLRLYEELIKRPG---------------------PNCLGALDGTYI 128
            ETV R F  VL A   L  + I+ P                         +GA+DGT++
Sbjct: 126 QETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHV 185

Query: 129 KVNVPAGDRPTFRTRKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGL 171
            V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L  A   ++  
Sbjct: 186 CVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEF 245

[Close]

BLAST of Cmc11g0302371 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 51/169 (30.18%), Postives = 78/169 (46.15%), Query Frame = 0


Query: 2   IHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVI 61
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +     I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPNCLGALDGTYIKVNVPAGDRPTFRT 121
              F  + ET+ R F+ VL A+ RL  E I+   P  +  L     ++       P    
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMD 136

Query: 122 RKGKIATNVLGVCDTKGDFVYVLTGWEGSAADSQILCDAISRENGLQVP 171
             G  + NVL +CD    F Y   G  GS  D+++L  AIS +    VP
Sbjct: 137 LLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182

The following BLAST results are available for this feature:

BLAST of Cmc11g0302371 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054567.1	6.4e-93	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062587.1	1.4e-87	96.51	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036923.1	2.6e-86	94.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	5.8e-86	94.77	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043157.1	1.3e-85	89.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0302371 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0302371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ20	3.1e-93	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6J9	6.7e-88	96.51	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T1V5	1.3e-86	94.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	2.8e-86	94.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TMY2	6.2e-86	89.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc11g0302371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	3.4e-28	36.22	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	5.7e-15	48.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	1.7e-14	28.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	1.4e-13	30.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 102..157 e-value: 1.2E-7 score: 31.5
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..168
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0302371.1	Cmc11g0302371.1	mRNA