Cmc11g0301721 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0301721
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 22182405 .. 22182899 (+)
RNA-Seq ExpressionCmc11g0301721
SyntenyCmc11g0301721
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTGGATTGTAGAGTCATCAACAAGATTACGTTAAAATATCGTCACCCTATACCTAGACTTGATGATATGTCTGATGAATTGCATGGATCTATTTTATTTACTAAAATTGATCTTAAGTCTGGATATCATCAGATTAAGATGAAAGTTGGTGATGAATGGAAAACTGCATTTAAGACTAAACATGGATTGTATGAGTGGTTAGTTATGACTTTTGGTCTTACCAATGCACCTAGTACATTTATGCGTCTCATGAATTATGTTTTGCATGAGTACATAGAAAAATTTGTGGTCGTTTACTTTAATGATATTTTGATTTATTCACCGTCTTTAGAAATGCATGTGGTTTTGTGTGCTTTAAGAAAAGCTCAGTTGTTTGTCAATACGAAAAAGTGTTCATTTTGTCTGGATAAGATTAACTTTTTTGGGTTTTTTATTTCTGCAAATGGTATTGAAGTTGATAATGAGAAAGTTAAAGCTATCCAAGAATGA

mRNA sequence

ATGTGTGTGGATTGTAGAGTCATCAACAAGATTACGTTAAAATATCGTCACCCTATACCTAGACTTGATGATATGTCTGATGAATTGCATGGATCTATTTTATTTACTAAAATTGATCTTAAGTCTGGATATCATCAGATTAAGATGAAAGTTGGTGATGAATGGAAAACTGCATTTAAGACTAAACATGGATTGTATGAGTGGTTAGTTATGACTTTTGGTCTTACCAATGCACCTAGTACATTTATGCGTCTCATGAATTATGTTTTGCATGAGTACATAGAAAAATTTGTGGTCGTTTACTTTAATGATATTTTGATTTATTCACCGTCTTTAGAAATGCATGTGGTTTTGTGTGCTTTAAGAAAAGCTCAGTTGTTTGTCAATACGAAAAAGTGTTCATTTTGTCTGGATAAGATTAACTTTTTTGGGTTTTTTATTTCTGCAAATGGTATTGAAGTTGATAATGAGAAAGTTAAAGCTATCCAAGAATGA

Coding sequence (CDS)

ATGTGTGTGGATTGTAGAGTCATCAACAAGATTACGTTAAAATATCGTCACCCTATACCTAGACTTGATGATATGTCTGATGAATTGCATGGATCTATTTTATTTACTAAAATTGATCTTAAGTCTGGATATCATCAGATTAAGATGAAAGTTGGTGATGAATGGAAAACTGCATTTAAGACTAAACATGGATTGTATGAGTGGTTAGTTATGACTTTTGGTCTTACCAATGCACCTAGTACATTTATGCGTCTCATGAATTATGTTTTGCATGAGTACATAGAAAAATTTGTGGTCGTTTACTTTAATGATATTTTGATTTATTCACCGTCTTTAGAAATGCATGTGGTTTTGTGTGCTTTAAGAAAAGCTCAGTTGTTTGTCAATACGAAAAAGTGTTCATTTTGTCTGGATAAGATTAACTTTTTTGGGTTTTTTATTTCTGCAAATGGTATTGAAGTTGATAATGAGAAAGTTAAAGCTATCCAAGAATGA

Protein sequence

MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFKTKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHVVLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE
Homology
BLAST of Cmc11g0301721 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR INKIT+KYRHPIPRLDDM DELHG  LFTKIDLKSGYHQI+M +GDEWKTAFK
Sbjct: 728 MCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFK 787

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL EY+ KFVVVYF+DIL+YS SL+ H+    
Sbjct: 788 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVR 847

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LR   L+VN KKCSFC++K+NF GF +S+NG+EVD EKVKAI+E
Sbjct: 848 NVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEKVKAIKE 896

BLAST of Cmc11g0301721 vs. NCBI nr
Match: XP_023521183.1 (uncharacterized protein LOC111784872 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR INKIT+KYRHPIPRLDDM DELHG  LFTKIDLKSGYHQI+M +GDEWKTAFK
Sbjct: 563 MCVDCRAINKITIKYRHPIPRLDDMLDELHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFK 622

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL EY+ KFVVVYF+DIL+YS SL+ H+    
Sbjct: 623 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLDDHITHVR 682

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LR   L+VN KKCSFC++K+NF GF +S+NG+EVD EKVKAI+E
Sbjct: 683 NVLTTLRNECLYVNLKKCSFCMEKVNFLGFVVSSNGVEVDEEKVKAIKE 731

BLAST of Cmc11g0301721 vs. NCBI nr
Match: XP_031374109.1 (uncharacterized protein LOC116188779 [Punica granatum])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR +NKIT+KYRHPIPRLDDM DELHGS LFTKIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 393 MCVDCRAVNKITVKYRHPIPRLDDMLDELHGSTLFTKIDLKSGYHQIRMKEGDEWKTAFK 452

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TKHGLYEWLVM FGLTNAPSTFMRLMN+VL  +I KFVVVYF+DIL+YS SL+ H+    
Sbjct: 453 TKHGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILVYSKSLKDHIHHLR 512

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL ALR  +L+ N KKC+FC+D++ F GF +S+ GI+VD EKVKAI++
Sbjct: 513 CVLQALRHEELYANLKKCTFCMDRVVFLGFVVSSKGIQVDEEKVKAIKD 561

BLAST of Cmc11g0301721 vs. NCBI nr
Match: XP_022158760.1 (uncharacterized protein LOC111025226 [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 124/169 (73.37%), Postives = 142/169 (84.02%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR INKIT+KYRHPIPRLDDM DE HG  LFTKIDLKSGYHQI+M +GDEWKTAFK
Sbjct: 243 MCVDCRAINKITIKYRHPIPRLDDMLDEXHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFK 302

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL EY+ KFVVVYF+DIL+YS SL  HV    
Sbjct: 303 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLNEHVEHVR 362

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  L+K  L+ N KKCSFC++K+NF GF +S+ G+EVD EKVKAI++
Sbjct: 363 SVLNTLKKECLYANLKKCSFCMEKVNFLGFVVSSKGVEVDEEKVKAIRD 411

BLAST of Cmc11g0301721 vs. NCBI nr
Match: XP_013669465.1 (uncharacterized protein LOC106373896 [Brassica napus] >XP_022543888.1 uncharacterized protein LOC106373892 [Brassica napus] >XP_022543889.1 uncharacterized protein LOC106373893 [Brassica napus] >XP_022543891.1 uncharacterized protein LOC106373895 [Brassica napus])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 125/169 (73.96%), Postives = 141/169 (83.43%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR IN IT+KYRHPIPRLDDM DELHGS +F+KIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 487 MCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMKEGDEWKTAFK 546

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TKHGLYEWLVM FGLTNAPSTFMRLMN+VL  +I  FVVVYF+DIL+YS SLE H+    
Sbjct: 547 TKHGLYEWLVMPFGLTNAPSTFMRLMNHVLRSFIGLFVVVYFDDILVYSKSLEEHIKHLR 606

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LRK +LF N KKC+FC D + F GF +SA+G++VD EKVKAIQE
Sbjct: 607 TVLDVLRKEKLFANLKKCTFCTDNLVFLGFIVSADGVKVDQEKVKAIQE 655

BLAST of Cmc11g0301721 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-31
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 0

Query: 3   VDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFKTK 62
           +D R +N+IT+  RHPIP +D++  +L     FT IDL  G+HQI+M      KTAF TK
Sbjct: 266 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 325

Query: 63  HGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMH-----VV 122
           HG YE+L M FGL NAP+TF R MN +L   + K  +VY +DI+++S SL+ H     +V
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 385

Query: 123 LCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
              L KA L +   KC F   +  F G  ++ +GI+ + EK++AIQ+
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQK 432

BLAST of Cmc11g0301721 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-29
Identity = 69/169 (40.83%), Postives = 105/169 (62.13%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           M VD + +N +T+   +PIP ++     L  +  FT +DL SG+HQI MK  D  KTAF 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMH----- 120
           T +G YE+L + FGL NAP+ F R+++ +L E+I K   VY +DI+++S   + H     
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 121 VVLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
           +VL +L KA L VN +K  F   ++ F G+ ++A+GI+ D +KV+AI E
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISE 348

BLAST of Cmc11g0301721 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 71/165 (43.03%), Postives = 98/165 (59.39%), Query Frame = 0

Query: 3   VDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFKTK 62
           +D R +N+IT+  R+PIP +D++  +L     FT IDL  G+HQI+M      KTAF TK
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 63  HGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMH-----VV 122
            G YE+L M FGL NAP+TF R MN +L   + K  +VY +DI+I+S SL  H     +V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 123 LCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAI 163
              L  A L +   KC F   + NF G  ++ +GI+ +  KVKAI
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAI 429

BLAST of Cmc11g0301721 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           +CVD R +NK T+    P+PR+D++   +  + +FT +DL SGYHQI M+  D +KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMH----- 120
           T  G YE+ VM FGL NAPSTF R M     +   +FV VY +DILI+S S E H     
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 121 VVLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  L+   L V  KKC F  ++  F G+ I    I     K  AI++
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRD 814

BLAST of Cmc11g0301721 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-29
Identity = 72/169 (42.60%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           +CVD R +NK T+    P+PR+D++   +  + +FT +DL SGYHQI M+  D +KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMH----- 120
           T  G YE+ VM FGL NAPSTF R M     +   +FV VY +DILI+S S E H     
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 121 VVLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  L+   L V  KKC F  ++  F G+ I    I     K  AI++
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRD 840

BLAST of Cmc11g0301721 vs. ExPASy TrEMBL
Match: A0A6J1DWQ2 (uncharacterized protein LOC111025226 OS=Momordica charantia OX=3673 GN=LOC111025226 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 124/169 (73.37%), Postives = 142/169 (84.02%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR INKIT+KYRHPIPRLDDM DE HG  LFTKIDLKSGYHQI+M +GDEWKTAFK
Sbjct: 243 MCVDCRAINKITIKYRHPIPRLDDMLDEXHGCSLFTKIDLKSGYHQIRMHIGDEWKTAFK 302

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL EY+ KFVVVYF+DIL+YS SL  HV    
Sbjct: 303 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLREYLGKFVVVYFDDILVYSKSLNEHVEHVR 362

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  L+K  L+ N KKCSFC++K+NF GF +S+ G+EVD EKVKAI++
Sbjct: 363 SVLNTLKKECLYANLKKCSFCMEKVNFLGFVVSSKGVEVDEEKVKAIRD 411

BLAST of Cmc11g0301721 vs. ExPASy TrEMBL
Match: A0A6P8BUZ0 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116188779 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR +NKIT+KYRHPIPRLDDM DELHGS LFTKIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 393 MCVDCRAVNKITVKYRHPIPRLDDMLDELHGSTLFTKIDLKSGYHQIRMKEGDEWKTAFK 452

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TKHGLYEWLVM FGLTNAPSTFMRLMN+VL  +I KFVVVYF+DIL+YS SL+ H+    
Sbjct: 453 TKHGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILVYSKSLKDHIHHLR 512

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL ALR  +L+ N KKC+FC+D++ F GF +S+ GI+VD EKVKAI++
Sbjct: 513 CVLQALRHEELYANLKKCTFCMDRVVFLGFVVSSKGIQVDEEKVKAIKD 561

BLAST of Cmc11g0301721 vs. ExPASy TrEMBL
Match: A0A2N9FBE6 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12202 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-66
Identity = 128/169 (75.74%), Postives = 141/169 (83.43%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR IN IT+KYRHPIPRLDDM DELHGS +FTKIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 613 MCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFK 672

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL  +I +FVVVYF+DILIYS +LE HV    
Sbjct: 673 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVVVYFDDILIYSKNLEEHVMHLK 732

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LRK +LF N KKC+FC DK+ F GF +S  GIEVD EKVKAIQE
Sbjct: 733 SVLEILRKEKLFANLKKCTFCTDKLVFLGFVVSKRGIEVDEEKVKAIQE 781

BLAST of Cmc11g0301721 vs. ExPASy TrEMBL
Match: A0A2N9H7E7 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35605 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-66
Identity = 128/169 (75.74%), Postives = 141/169 (83.43%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR IN IT+KYRHPIPRLDDM DELHGS +FTKIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 723 MCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFK 782

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL  +I +FVVVYF+DILIYS +LE HV    
Sbjct: 783 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVVVYFDDILIYSKNLEEHVMHLK 842

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LRK +LF N KKC+FC DK+ F GF +S  GIEVD EKVKAIQE
Sbjct: 843 SVLEILRKEKLFANLKKCTFCTDKLVFLGFVVSKRGIEVDEEKVKAIQE 891

BLAST of Cmc11g0301721 vs. ExPASy TrEMBL
Match: A0A2N9F015 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12188 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-66
Identity = 128/169 (75.74%), Postives = 141/169 (83.43%), Query Frame = 0

Query: 1   MCVDCRVINKITLKYRHPIPRLDDMSDELHGSILFTKIDLKSGYHQIKMKVGDEWKTAFK 60
           MCVDCR IN IT+KYRHPIPRLDDM DELHGS +FTKIDLKSGYHQI+MK GDEWKTAFK
Sbjct: 490 MCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFK 549

Query: 61  TKHGLYEWLVMTFGLTNAPSTFMRLMNYVLHEYIEKFVVVYFNDILIYSPSLEMHV---- 120
           TK+GLYEWLVM FGLTNAPSTFMRLMN+VL  +I +FVVVYF+DILIYS +LE HV    
Sbjct: 550 TKYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVVVYFDDILIYSKNLEEHVMHLK 609

Query: 121 -VLCALRKAQLFVNTKKCSFCLDKINFFGFFISANGIEVDNEKVKAIQE 165
            VL  LRK +LF N KKC+FC DK+ F GF +S  GIEVD EKVKAIQE
Sbjct: 610 SVLEILRKEKLFANLKKCTFCTDKLVFLGFVVSKRGIEVDEEKVKAIQE 658

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023553652.13.0e-6875.15uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo][more]
XP_023521183.13.0e-6875.15uncharacterized protein LOC111784872 [Cucurbita pepo subsp. pepo][more]
XP_031374109.13.6e-6673.37uncharacterized protein LOC116188779 [Punica granatum][more]
XP_022158760.13.6e-6673.37uncharacterized protein LOC111025226 [Momordica charantia][more]
XP_013669465.11.1e-6573.96uncharacterized protein LOC106373896 [Brassica napus] >XP_022543888.1 uncharacte... [more]
Match NameE-valueIdentityDescription
P043233.9e-3143.11Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P92.2e-2940.83Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P208258.2e-2943.03Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q993158.2e-2942.60Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG58.2e-2942.60Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A6J1DWQ21.8e-6673.37uncharacterized protein LOC111025226 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6P8BUZ01.8e-6673.37Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116188779 PE=4 SV=1[more]
A0A2N9FBE63.9e-6675.74Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12202 PE=4 SV=1[more]
A0A2N9H7E73.9e-6675.74Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35605 PE=4 SV=1[more]
A0A2N9F0153.9e-6675.74Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..145
e-value: 5.6E-22
score: 78.4
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..77
e-value: 7.8E-54
score: 184.2
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 2..164
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..164
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..147
e-value: 2.14847E-66
score: 198.203
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 17..147
e-value: 7.8E-54
score: 184.2
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0301721.1Cmc11g0301721.1mRNA