Cmc11g0301451 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0301451
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 21729924 .. 21730445 (+)
RNA-Seq ExpressionCmc11g0301451
SyntenyCmc11g0301451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCCAGCAGAGTTGAAAGAGCTAAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGGCCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAAAAGAAGGATGGATCGATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGATGATTTGTTTGACCAATTACAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCTGTTAGGATATCATCAGTTGAGGATTAAGGATAGCGATGTACTAAAAAAAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATGTCCTTTGGGTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGATATTTTGATATATTCTAAGAGAGAGGCAGAGCATGAGGAGCATTTACGCATGGTGTTTTTGTGGATCCAGCTAAGATAG

mRNA sequence

ATGGCCCCAGCAGAGTTGAAAGAGCTAAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGGCCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAAAAGAAGGATGGATCGATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGATGATTTGTTTGACCAATTACAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCTGTTAGGATATCATCAGTTGAGGATTAAGGATAGCGATGTACTAAAAAAAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATGTCCTTTGGGTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGATATTTTGATATATTCTAAGAGAGAGGCAGAGCATGAGGAGCATTTACGCATGGTGTTTTTGTGGATCCAGCTAAGATAG

Coding sequence (CDS)

ATGGCCCCAGCAGAGTTGAAAGAGCTAAAAGTGCAGTTACAGGAGTTGCTTGACAAAGGCTTCATTCGGCCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAAAAGAAGGATGGATCGATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGGTAACTGTTAAGAACAAATATCCCTTGCCCAGGATCGATGATTTGTTTGACCAATTACAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCTGTTAGGATATCATCAGTTGAGGATTAAGGATAGCGATGTACTAAAAAAAACCTTTCGTTCCAGATATGGGCACTATGAGTTTATTGTGATGTCCTTTGGGTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTTTGATCGTGTTTATTGATGATATTTTGATATATTCTAAGAGAGAGGCAGAGCATGAGGAGCATTTACGCATGGTGTTTTTGTGGATCCAGCTAAGATAG

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMVFLWIQLR
Homology
BLAST of Cmc11g0301451 vs. NCBI nr
Match: KAA0054397.1 (pol protein [Cucumis melo var. makuwa] >TYJ96824.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.3e-86
Identity = 163/175 (93.14%), Postives = 167/175 (95.43%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLK TFRSRYGHYEFIV+SFG T
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKTTFRSRYGHYEFIVISFGST 120

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV------FLW 170
           NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRM+      F+W
Sbjct: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMLTRKGAPFVW 175

BLAST of Cmc11g0301451 vs. NCBI nr
Match: KAA0032794.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-83
Identity = 157/166 (94.58%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 726 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 785

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 786 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 845

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 846 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 891

BLAST of Cmc11g0301451 vs. NCBI nr
Match: KAA0054678.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.7e-83
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK+GSMRLCIDYRELNKVTVKN+
Sbjct: 607 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKNGSMRLCIDYRELNKVTVKNR 666

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DVLK  FRSRYGHYEFIVMSFGLT
Sbjct: 667 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVLKTAFRSRYGHYEFIVMSFGLT 726

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAP VFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 727 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 772

BLAST of Cmc11g0301451 vs. NCBI nr
Match: KAA0040402.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 334 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 393

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 394 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 453

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLR+V
Sbjct: 454 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIV 499

BLAST of Cmc11g0301451 vs. NCBI nr
Match: KAA0036671.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 833 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 892

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 893 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 952

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAP VFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 953 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 998

BLAST of Cmc11g0301451 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 149.4 bits (376), Expect = 3.6e-35
Identity = 74/160 (46.25%), Postives = 104/160 (65.00%), Query Frame = 0

Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLTNAPTVF 126
           D+L  ++  A +F+ +DL  GYHQ+ ++  D  K  F +  G YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
              M   FR+    F+ V++DDILI+S+   EH +HL  V
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTV 767

BLAST of Cmc11g0301451 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 3.6e-35
Identity = 74/160 (46.25%), Postives = 104/160 (65.00%), Query Frame = 0

Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLTNAPTVF 126
           D+L  ++  A +F+ +DL  GYHQ+ ++  D  K  F +  G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
              M   FR+    F+ V++DDILI+S+   EH +HL  V
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTV 793

BLAST of Cmc11g0301451 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-34
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 42  SMRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKK 101
           S+R+CIDYR L KVT+KNKYP+PR+DDLFD+L  AT F+K+DL  GY Q+RI   D  K 
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 TFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFLIVFIDDIL---IYSKREAE 161
           T  +RYG +EF VM FGLTNA   F +LMN V  E+LD F++V++DD++   IYS    E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 162 HEEHLRMV 167
           H +HLR+V
Sbjct: 125 HIKHLRVV 132

BLAST of Cmc11g0301451 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.4e-32
Identity = 62/166 (37.35%), Postives = 107/166 (64.46%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL   YH +R++  D  K  FR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
            AP  F   +N +  E  ++ ++ ++DDILI+SK E+EH +H++ V
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDV 585

BLAST of Cmc11g0301451 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.4e-32
Identity = 62/166 (37.35%), Postives = 107/166 (64.46%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL   YH +R++  D  K  FR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
            AP  F   +N +  E  ++ ++ ++DDILI+SK E+EH +H++ V
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDV 585

BLAST of Cmc11g0301451 vs. ExPASy TrEMBL
Match: A0A5D3BCU1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00150 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 163/175 (93.14%), Postives = 167/175 (95.43%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVT+KNK
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTIKNK 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLK TFRSRYGHYEFIV+SFG T
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKTTFRSRYGHYEFIVISFGST 120

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV------FLW 170
           NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRM+      F+W
Sbjct: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMLTRKGAPFVW 175

BLAST of Cmc11g0301451 vs. ExPASy TrEMBL
Match: A0A5D3E456 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00150 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 157/166 (94.58%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 726 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 785

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 786 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 845

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 846 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 891

BLAST of Cmc11g0301451 vs. ExPASy TrEMBL
Match: A0A5A7UI54 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004990 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK+GSMRLCIDYRELNKVTVKN+
Sbjct: 607 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKNGSMRLCIDYRELNKVTVKNR 666

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DVLK  FRSRYGHYEFIVMSFGLT
Sbjct: 667 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVLKTAFRSRYGHYEFIVMSFGLT 726

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAP VFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 727 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 772

BLAST of Cmc11g0301451 vs. ExPASy TrEMBL
Match: A0A5A7TAB9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00160 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 334 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 393

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 394 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 453

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAPTVFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLR+V
Sbjct: 454 NAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIV 499

BLAST of Cmc11g0301451 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.3e-83
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 154 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 213

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLLLGYHQLRIKDSDVLKKTFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDL  GYHQLRIKD DV K  FRSRYGHYEFIVMSFGLT
Sbjct: 214 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 273

Query: 121 NAPTVFMDLMNRVFREFLDTFLIVFIDDILIYSKREAEHEEHLRMV 167
           NAP VFMDLMNRVFREFLDTF+IVFIDDILIYSK EAEHEEHLRMV
Sbjct: 274 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMV 319

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054397.13.3e-8693.14pol protein [Cucumis melo var. makuwa] >TYJ96824.1 pol protein [Cucumis melo var... [more]
KAA0032794.13.4e-8394.58ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30351.1 ty3-gyp... [more]
KAA0054678.17.7e-8393.98gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0040402.11.0e-8293.98pol protein [Cucumis melo var. makuwa][more]
KAA0036671.11.3e-8293.98gag protease polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q993153.6e-3546.25Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG53.6e-3546.25Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P318439.0e-3456.25RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1[more]
P0CT418.4e-3237.35Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT348.4e-3237.35Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5D3BCU11.6e-8693.14Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00150 P... [more]
A0A5D3E4561.7e-8394.58Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold57... [more]
A0A5A7UI543.7e-8393.98Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7TAB94.9e-8393.98Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35... [more]
A0A5A7VIT96.3e-8393.98Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 61..167
e-value: 2.3E-69
score: 234.9
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..121
e-value: 2.3E-69
score: 234.9
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..167
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 2..167
NoneNo IPR availableCDDcd01647RT_LTRcoord: 20..167
e-value: 3.31772E-75
score: 220.93
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 36..170
e-value: 2.3E-20
score: 73.1
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0301451.1Cmc11g0301451.1mRNA