Cmc11g0301351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0301351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 21575390 .. 21575650 (+)
RNA-Seq Expression	Cmc11g0301351
Synteny	Cmc11g0301351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGATAACTGTTAAGAACAAATATCCTTTGCCCAGGATCGATGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGAACGACCATCGGTCAGGATATCATCAGTTAAGGATTAAGGATAGTGATGTACCGAAAATAGCCTTTCGTTCTAGATATGGGCATTATGAGTTTATTGTGATGTCCTTCGGTTTGACGAATGCTCCAATAGTGTTTAGGGTTTGA

mRNA sequence

ATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGATAACTGTTAAGAACAAATATCCTTTGCCCAGGATCGATGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGAACGACCATCGGTCAGGATATCATCAGTTAAGGATTAAGGATAGTGATGTACCGAAAATAGCCTTTCGTTCTAGATATGGGCATTATGAGTTTATTGTGATGTCCTTCGGTTTGACGAATGCTCCAATAGTGTTTAGGGTTTGA

Coding sequence (CDS)

ATGCGCTTATGTATTGACTACAGGGAGTTGAATAAGATAACTGTTAAGAACAAATATCCTTTGCCCAGGATCGATGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGAACGACCATCGGTCAGGATATCATCAGTTAAGGATTAAGGATAGTGATGTACCGAAAATAGCCTTTCGTTCTAGATATGGGCATTATGAGTTTATTGTGATGTCCTTCGGTTTGACGAATGCTCCAATAGTGTTTAGGGTTTGA

Protein sequence

MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIAFRSRYGHYEFIVMSFGLTNAPIVFRV

Homology

[Close]

BLAST of Cmc11g0301351 vs. NCBI nr
Match: KAA0067347.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30675.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDH+SGYHQLRIKDSDVPK A
Sbjct: 211 MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHQSGYHQLRIKDSDVPKTA 270

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVFRV 87
           FRSRYGHYEFIVMSFGLTNAPIVFRV
Sbjct: 271 FRSRYGHYEFIVMSFGLTNAPIVFRV 296

[Close]

BLAST of Cmc11g0301351 vs. NCBI nr
Match: ADN34002.1 (ty3-gypsy retrotransposon protein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 167.2 bits (422), Expect = 6.4e-38
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TV+NKYPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKDSDVPKI 
Sbjct: 150 MRLCIDYRELNKVTVQNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKIT 209

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFI+MSFGLTNAPIVF
Sbjct: 210 FRSRYGHYEFIIMSFGLTNAPIVF 233

[Close]

BLAST of Cmc11g0301351 vs. NCBI nr
Match: KAA0052348.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVF 581

[Close]

BLAST of Cmc11g0301351 vs. NCBI nr
Match: KAA0033475.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 495 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 554

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 555 FRSRYGHYEFIVMSFGLTNAPAVF 578

[Close]

BLAST of Cmc11g0301351 vs. NCBI nr
Match: TYK01903.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVF 581

[Close]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-23
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
          +R+CIDYR L K+T+KNKYP+PR+DDLFD+L  AT F+K D RSGY Q+RI   D PK  
Sbjct: 6  LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61 FRSRYGHYEFIVMSFGLTNAPIVF 85
            +RYG +EF VM FGLTNA   F
Sbjct: 66 CVTRYGSFEFRVMPFGLTNALATF 89

[Close]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 2   RLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+  D  SGYHQ+ ++  D  K AF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  RSRYGHYEFIVMSFGLTNAPIVF 85
            +  G YE+ VM FGL NAP  F
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTF 729

[Close]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-18
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 2   RLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+  D  SGYHQ+ ++  D  K AF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYGHYEFIVMSFGLTNAPIVF 85
            +  G YE+ VM FGL NAP  F
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTF 755

[Close]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-16
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K D +S YH +R++  D  K+A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVFR 86
           FR   G +E++VM +G++ AP  F+
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQ 546

[Close]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-16
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K D +S YH +R++  D  K+A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVFR 86
           FR   G +E++VM +G++ AP  F+
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQ 546

[Close]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL
Match: A0A5A7VJJ3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00180 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.9e-42
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDH+SGYHQLRIKDSDVPK A
Sbjct: 211 MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHQSGYHQLRIKDSDVPKTA 270

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVFRV 87
           FRSRYGHYEFIVMSFGLTNAPIVFRV
Sbjct: 271 FRSRYGHYEFIVMSFGLTNAPIVFRV 296

[Close]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL
Match: E5GC03 (Ty3-gypsy retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.1e-38
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TV+NKYPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKDSDVPKI 
Sbjct: 150 MRLCIDYRELNKVTVQNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDSDVPKIT 209

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFI+MSFGLTNAPIVF
Sbjct: 210 FRSRYGHYEFIIMSFGLTNAPIVF 233

[Close]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL
Match: A0A5A7UAV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001870 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.9e-38
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVF 581

[Close]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL
Match: A0A5D3BQD5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001680 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.9e-38
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 498 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 557

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 558 FRSRYGHYEFIVMSFGLTNAPTVF 581

[Close]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL
Match: A0A5A7SWD4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00050 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.9e-38
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRLCIDYRELNKITVKNKYPLPRIDDLFDQLQGATVFSKNDHRSGYHQLRIKDSDVPKIA 60
           MRLCIDYRELNK+TVKN+YPLPRIDDLFDQLQGATVFSK D RSGYHQLRIKD DVPKIA
Sbjct: 495 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKIA 554

Query: 61  FRSRYGHYEFIVMSFGLTNAPIVF 85
           FRSRYGHYEFIVMSFGLTNAP VF
Sbjct: 555 FRSRYGHYEFIVMSFGLTNAPAVF 578

The following BLAST results are available for this feature:

BLAST of Cmc11g0301351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067347.1	1.6e-41	97.67	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30675.1 ty3-gyp...	[more]
ADN34002.1	6.4e-38	92.86	ty3-gypsy retrotransposon protein, partial [Cucumis melo subsp. melo]	[more]
KAA0052348.1	1.4e-37	92.86	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033475.1	1.4e-37	92.86	pol protein [Cucumis melo var. makuwa]	[more]
TYK01903.1	1.4e-37	92.86	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0301351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	1.2e-23	60.71	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	5.8e-18	49.40	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.8e-18	49.40	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.9e-16	42.35	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.9e-16	42.35	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJJ3	7.9e-42	97.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
E5GC03	3.1e-38	92.86	Ty3-gypsy retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo OX=4126...	[more]
A0A5A7UAV9	6.9e-38	92.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BQD5	6.9e-38	92.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7SWD4	6.9e-38	92.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]

BLAST of Cmc11g0301351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 3.2E-35 score: 123.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..85
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..85
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..84 e-value: 1.30571E-38 score: 124.63
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..84 e-value: 3.2E-35 score: 123.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0301351.1	Cmc11g0301351.1	mRNA