Cmc11g0301181 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0301181
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
LocationCMiso1.1chr11: 21391271 .. 21392698 (-)
RNA-Seq ExpressionCmc11g0301181
SyntenyCmc11g0301181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTTTTCGATCTGATGATGGTGGCGAATTTTGCGACAATTCTTTGCAATCCTTTTTTGAATCCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCTCGAACAAAATGGCATTGCAGAACGTAAACATCGTCACATTGTTGAAACTGCAATTTCTTTAATTTTTCACTCATTTATTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGCAGTTTTTCTTATTAATCGAATGCCCTCACCCTCTCTTCACACGTTGTCACCATTTGAAAACCTTTTTGGTAATACTCCTGATTTGCGTCATTTAAAAGTTTTTGAATGTGCATGTTATCCCCTTCAAAAACCCTACACCAAACACAAACTTGAACCCAAAATCACACAACACATATTTTTAGGCTATCCTCACAATTTTAAAGGTTATCTATGTTATAATCCATCAGTCAAACAAACCATTGTTTCACGACATGTTATCTTTCATGAAACAATTTTTCCCTTTGTCCAATCCTCTCCTTCTTCTCCATCTCACACTAAATCCATCTCTGATCCCAACCTACTACTCACCTTACTAAACCTTCCACAATCTTCAAACTCTACATCCTCACAATCTCCCACTTCTAACTCACCCACTGCTGACAATACTTGCTCACCTTTTATGGATACTAATGTCACTCATCAGTCTTTGAATGTTTCATCTATTGTTGATACAGGAAATGCGATTGATGTTTTCACCACCAATGCACCAACTCCTCGTAACACTCATGCCATGCAAACTCGGGAAAAATCAGGAATTTTTAAACCAAAGGCTTTCCATATCACAACTACAATTCCAACTCTCACATCCTACACTGAAACCTCCAAGTATCCTGAATGGCGAAACGCAATGTGTGAGGAATTTAATGCTCTTCAAGCACAAGGTACTTGGTCTTTAGTACCTCGACATCCATCCATGAATATTGTTGGCTATAAATGGGTTTTTCGTATCAAATATAATCCTGATGGCTCAGTTGCTCGTCACAAAGCCCGCCTAGTTGCAAAAGACTATCACCAAATACATAGTTTTGATTTTGATGAAACTTTTAGTCCTGTTGTCAAGAAGCCTACTATCCGAATTATTCTTTCTCTGGCTGCTCAATACAGTTGGTCCTTGACACAGTTAGATGTCAAAAATGCTTTTCTTCATAATATTCTTACGGAAACAGTATACATGTCTCAACCTACAGGTTTCCAAGAAAAAATTTGCCTAAACCACGTGTGTCTTCTCCACAAGGGTTTTTATGGTCTTAAACAAGCTCCTCATGCTTGGTTTAAACGCTTTACCTCTTATTTATTTACACTAGGATTTATTACCTCCAATGTTGATCCTTCTTTTTTTTCATTCGATCAGTTAGATCTTCTCTCACTTACTCTTGTATGTAGATGA

mRNA sequence

ATGAAAGTTTTTCGATCTGATGATGGTGGCGAATTTTGCGACAATTCTTTGCAATCCTTTTTTGAATCCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCTCGAACAAAATGGCATTGCAGAACGTAAACATCGTCACATTGTTGAAACTGCAATTTCTTTAATTTTTCACTCATTTATTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGCAGTTTTTCTTATTAATCGAATGCCCTCACCCTCTCTTCACACGTTGTCACCATTTGAAAACCTTTTTGGTAATACTCCTGATTTGCGTCATTTAAAAGTTTTTGAATGTGCATGTTATCCCCTTCAAAAACCCTACACCAAACACAAACTTGAACCCAAAATCACACAACACATATTTTTAGGCTATCCTCACAATTTTAAAGGTTATCTATGTTATAATCCATCAGTCAAACAAACCATTGTTTCACGACATGTTATCTTTCATGAAACAATTTTTCCCTTTGTCCAATCCTCTCCTTCTTCTCCATCTCACACTAAATCCATCTCTGATCCCAACCTACTACTCACCTTACTAAACCTTCCACAATCTTCAAACTCTACATCCTCACAATCTCCCACTTCTAACTCACCCACTGCTGACAATACTTGCTCACCTTTTATGGATACTAATGTCACTCATCAGTCTTTGAATGTTTCATCTATTGTTGATACAGGAAATGCGATTGATGTTTTCACCACCAATGCACCAACTCCTCGTAACACTCATGCCATGCAAACTCGGGAAAAATCAGGAATTTTTAAACCAAAGGCTTTCCATATCACAACTACAATTCCAACTCTCACATCCTACACTGAAACCTCCAAGTATCCTGAATGGCGAAACGCAATGTGTGAGGAATTTAATGCTCTTCAAGCACAAGGTACTTGGTCTTTAGTACCTCGACATCCATCCATGAATATTGTTGGCTATAAATGGGTTTTTCGTATCAAATATAATCCTGATGGCTCAGTTGCTCGTCACAAAGCCCGCCTAGTTGCAAAAGACTATCACCAAATACATAGTTTTGATTTTGATGAAACTTTTAGTCCTGTTGTCAAGAAGCCTACTATCCGAATTATTCTTTCTCTGGCTGCTCAATACAGTTGGTCCTTGACACAGTTAGATGTCAAAAATGCTTTTCTTCATAATATTCTTACGGAAACAGTATACATGTCTCAACCTACAGGTTTCCAAGAAAAAATTTGCCTAAACCACGTGTGTCTTCTCCACAAGGGTTTTTATGGTCTTAAACAAGCTCCTCATGCTTGGTTTAAACGCTTTACCTCTTATTTATTTACACTAGGATTTATTACCTCCAATGTTGATCCTTCTTTTTTTTCATTCGATCAGTTAGATCTTCTCTCACTTACTCTTGTATGTAGATGA

Coding sequence (CDS)

ATGAAAGTTTTTCGATCTGATGATGGTGGCGAATTTTGCGACAATTCTTTGCAATCCTTTTTTGAATCCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCTCGAACAAAATGGCATTGCAGAACGTAAACATCGTCACATTGTTGAAACTGCAATTTCTTTAATTTTTCACTCATTTATTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGCAGTTTTTCTTATTAATCGAATGCCCTCACCCTCTCTTCACACGTTGTCACCATTTGAAAACCTTTTTGGTAATACTCCTGATTTGCGTCATTTAAAAGTTTTTGAATGTGCATGTTATCCCCTTCAAAAACCCTACACCAAACACAAACTTGAACCCAAAATCACACAACACATATTTTTAGGCTATCCTCACAATTTTAAAGGTTATCTATGTTATAATCCATCAGTCAAACAAACCATTGTTTCACGACATGTTATCTTTCATGAAACAATTTTTCCCTTTGTCCAATCCTCTCCTTCTTCTCCATCTCACACTAAATCCATCTCTGATCCCAACCTACTACTCACCTTACTAAACCTTCCACAATCTTCAAACTCTACATCCTCACAATCTCCCACTTCTAACTCACCCACTGCTGACAATACTTGCTCACCTTTTATGGATACTAATGTCACTCATCAGTCTTTGAATGTTTCATCTATTGTTGATACAGGAAATGCGATTGATGTTTTCACCACCAATGCACCAACTCCTCGTAACACTCATGCCATGCAAACTCGGGAAAAATCAGGAATTTTTAAACCAAAGGCTTTCCATATCACAACTACAATTCCAACTCTCACATCCTACACTGAAACCTCCAAGTATCCTGAATGGCGAAACGCAATGTGTGAGGAATTTAATGCTCTTCAAGCACAAGGTACTTGGTCTTTAGTACCTCGACATCCATCCATGAATATTGTTGGCTATAAATGGGTTTTTCGTATCAAATATAATCCTGATGGCTCAGTTGCTCGTCACAAAGCCCGCCTAGTTGCAAAAGACTATCACCAAATACATAGTTTTGATTTTGATGAAACTTTTAGTCCTGTTGTCAAGAAGCCTACTATCCGAATTATTCTTTCTCTGGCTGCTCAATACAGTTGGTCCTTGACACAGTTAGATGTCAAAAATGCTTTTCTTCATAATATTCTTACGGAAACAGTATACATGTCTCAACCTACAGGTTTCCAAGAAAAAATTTGCCTAAACCACGTGTGTCTTCTCCACAAGGGTTTTTATGGTCTTAAACAAGCTCCTCATGCTTGGTTTAAACGCTTTACCTCTTATTTATTTACACTAGGATTTATTACCTCCAATGTTGATCCTTCTTTTTTTTCATTCGATCAGTTAGATCTTCTCTCACTTACTCTTGTATGTAGATGA

Protein sequence

MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHSFIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYTKHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHTKSISDPNLLLTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVTHQSLNVSSIVDTGNAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFHITTTIPTLTSYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTGFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFFSFDQLDLLSLTLVCR
Homology
BLAST of Cmc11g0301181 vs. NCBI nr
Match: TQE09310.1 (hypothetical protein C1H46_005046 [Malus baccata])

HSP 1 Score: 416.0 bits (1068), Expect = 4.4e-112
Identity = 233/490 (47.55%), Postives = 301/490 (61.43%), Query Frame = 0

Query: 1   MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
           +++ +SD GGE+     Q+F ++KGI H KSCPYT +QNG+AERK+RHI ETA++L+  +
Sbjct: 283 IRILQSDGGGEYVGLQFQNFLKTKGILHHKSCPYTPQQNGLAERKNRHITETAVTLLQQA 342

Query: 61  FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
            +P +FW +A +TAV+LINRMP+P L   SPFE L+ + P L HLK+F CACYP  +PY 
Sbjct: 343 RLPPKFWYHACATAVYLINRMPTPVLAMQSPFEKLYHSPPKLDHLKIFGCACYPSLRPYR 402

Query: 121 KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFP--FVQSSPSSPSH 180
            HKL PK ++ IFLGY   +KG++C+NP   + IVSRHV+F E  FP  F+ S  S  + 
Sbjct: 403 SHKLAPKTSECIFLGYAAQYKGFICFNPQDNKLIVSRHVLFDECQFPATFLSSHHSQGTQ 462

Query: 181 TKSIS---DPNLL----LTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVTHQ--- 240
           + SIS   +PN      L  +  PQ  +  SS  PTS +      CSP     V+     
Sbjct: 463 SVSISSTVNPNTFHHPPLVPVPFPQVFSRDSSSLPTSTA------CSPVSRELVSSSPLV 522

Query: 241 SLNVSSIVDTGNAIDVFTTNAPTPR---------------NTHAMQTREKSGIFKPK-AF 300
           SL + S+VD  +A    +   P  R               NTH MQTR KSGI K K AF
Sbjct: 523 SLPLDSVVDVHSAPPSSSELYPDIRMSQASELQQVSIGAVNTHPMQTRSKSGISKKKTAF 582

Query: 301 HITTTI--PTLTSYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRI 360
            +          SY+   K   WR+AM EE  AL+ Q TW+LVP  P  N+VG KW+++I
Sbjct: 583 SVAVQSGDQEPQSYSAACKLSHWRDAMQEEMTALRQQNTWTLVPLPPDKNLVGCKWIYKI 642

Query: 361 KYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDV 420
           K +PDG+VAR+KARLVAK + Q    D+ ETFSPVVK  T+R++LSLAA   W L QLDV
Sbjct: 643 KRHPDGTVARYKARLVAKGFSQEAGLDYYETFSPVVKPTTVRLLLSLAASNGWKLKQLDV 702

Query: 421 KNAFLHNILTETVYMSQPTGFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGF 461
           KNAFLH  L E VYM+QP GF + +   HVC L +  YGLKQAP AW   FT +L TLGF
Sbjct: 703 KNAFLHGFLEEEVYMAQPQGFVDSVHPAHVCKLQRSLYGLKQAPRAWNDSFTKFLLTLGF 762

BLAST of Cmc11g0301181 vs. NCBI nr
Match: PKU68501.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-111
Identity = 225/483 (46.58%), Postives = 299/483 (61.90%), Query Frame = 0

Query: 1   MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
           +K  ++D G EF +N L+SF ++ GI H+ SCPYT EQNG+AERK+RHI+ET  +L+  +
Sbjct: 228 IKCIQTDGGSEFTNNELKSFLQNNGIHHRISCPYTPEQNGMAERKNRHIIETTRTLLQTA 287

Query: 61  FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
            +P +FWP A  TAV LINRMPS ++   +PFE L    P   HLK F CACYP   P  
Sbjct: 288 HLPYQFWPDAALTAVHLINRMPSVTIQNKTPFELLHQTKPTYSHLKTFGCACYPWTPPSQ 347

Query: 121 KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHTK 180
           +HKLEPK +Q +FLGY  ++KGY C N S  + + SRHV F E +FPF   SP+ PS + 
Sbjct: 348 RHKLEPKASQCLFLGYHESYKGYKCLNVSTNKILFSRHVTFEEDLFPF-SLSPTHPSTSP 407

Query: 181 SISDPNLLLTLLNLPQSSNSTSSQS-PTSNSPTADNTCSPFMDTNVTHQSLNVSSIVDTG 240
           S+   +    LL LP S+ STS  +   SNSPT     SP   TN+T Q           
Sbjct: 408 SVPASSTNPYLL-LPTSTLSTSHVTHQPSNSPTTPT--SPTEQTNLTSQP---------- 467

Query: 241 NAIDVFTTNAPTP-RNTHAMQTREKSGIFKPKAF--------HITTTIPTLTSYTETSKY 300
                 TT++P P  ++H M TR K+G  KP+           I+  +P  TSY+E  K 
Sbjct: 468 -TTPPHTTSSPPPIPSSHPMITRLKTGTLKPRTLLNLLHKLQPISQPLPDPTSYSEAVKI 527

Query: 301 PEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDY 360
           P+WR AM  EF ALQ QGTW LVP  P+ N++G +W +R KY+ +G++AR+KARLVA+ +
Sbjct: 528 PQWREAMALEFLALQQQGTWLLVPPPPNANVLGSRWTYRTKYHSNGTIARYKARLVAQGH 587

Query: 361 HQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTG 420
            Q H  D+ +TF PV K PTIR+ L +A  +SW + Q+DV NAFLH  L ETVYM+QP G
Sbjct: 588 RQEHGLDYHDTFCPVAKMPTIRVFLLIALNHSWPIHQMDVANAFLHGDLHETVYMTQPKG 647

Query: 421 FQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFFSFDQLDLLSL 474
           F++ I  +HVCLL K  YGLKQAP  WF +F+SY+ + GF  S  D S F F Q ++   
Sbjct: 648 FEDNINPSHVCLLKKAIYGLKQAPRQWFHKFSSYIISYGFKQSQSDHSLFVFSQSNIQIY 695

BLAST of Cmc11g0301181 vs. NCBI nr
Match: TQE01264.1 (hypothetical protein C1H46_013171 [Malus baccata])

HSP 1 Score: 412.1 bits (1058), Expect = 6.3e-111
Identity = 234/493 (47.46%), Postives = 300/493 (60.85%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +KVF+SD GGE+  +  + +   KGI HQKSCPYT +QNG+AERKHRHI+ETAI+L+  +
Sbjct: 589  VKVFQSDGGGEYSSHKFKQYLLQKGILHQKSCPYTPQQNGLAERKHRHILETAITLLQTA 648

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +P + W +A + +V+LINRM   +L   SPF+ LFG +P + HLKVF CAC+PL K   
Sbjct: 649  SLPHKLWFHACAISVYLINRMACQTLQMSSPFQCLFGTSPSISHLKVFGCACFPLLKQLN 708

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHTK 180
              KL+PK +Q IF+GY   +KGYLC NP   +  VSRHV+F ET FP+  S  +S S + 
Sbjct: 709  SSKLQPKTSQCIFIGYAGQYKGYLCLNPLTNKIYVSRHVLFDETTFPY-SSIITSNSASS 768

Query: 181  SISDPNLLLTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVTHQSLNV----SSIV 240
             IS P+L +    LP   N  S  +  S  P   + CSP    N +  SL+     S  V
Sbjct: 769  HISSPSLHVQPQVLPSLVN--SHNTVVSPIPLQASECSPSTPPNASECSLSTPLPNSRFV 828

Query: 241  DTGNAI-----------------------DVFTTNAPTPR-NTHAMQTREKSGIFKPKAF 300
            D+  ++                       +  +   P P  + H MQTR KSGI K K F
Sbjct: 829  DSPTSLPSPTALPADSTQSLPPDDPDFQPEDLSVVLPVPLVSWHPMQTRSKSGISKKKVF 888

Query: 301  ----HITTTIPTLTSYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVF 360
                  +  +    ++    K PEW  AM +E  AL++Q TWSLVP   + N+VG KWV+
Sbjct: 889  SAKLQSSVQVSEPATFKSAIKIPEWVAAMEDEITALKSQNTWSLVPLPSTKNLVGCKWVY 948

Query: 361  RIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQL 420
            RIK NPDGSVAR+KARLVAK Y Q    D+ ETFSPVVK  T+R+IL+LAAQ+ WSL QL
Sbjct: 949  RIKTNPDGSVARYKARLVAKGYSQEEGVDYCETFSPVVKPTTVRLILALAAQFQWSLRQL 1008

Query: 421  DVKNAFLHNILTETVYMSQPTGFQEKI-CLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFT 461
            DVKNAFLH  L E VYMSQP GF+  +   N+VC LHK  YGLKQAP AW ++FTS+L  
Sbjct: 1009 DVKNAFLHGDLHEEVYMSQPQGFESSVHPSNYVCRLHKSLYGLKQAPRAWNEKFTSFLPG 1068

BLAST of Cmc11g0301181 vs. NCBI nr
Match: PRQ49208.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 411.0 bits (1055), Expect = 1.4e-110
Identity = 225/516 (43.60%), Postives = 307/516 (59.50%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +KV ++D GGE+  +  + F    GISHQ SCPYT +QNG+AERK+RHIVETA++L+ ++
Sbjct: 645  VKVLQTDGGGEYTSHIFKEFLAKNGISHQLSCPYTPQQNGLAERKNRHIVETALTLLNNA 704

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +P  FW +A + +V+LINRMP  +L   SPFE LF   P + H++VF C CYPL KPY 
Sbjct: 705  SLPPRFWYHACAISVYLINRMPCTTLSMKSPFELLFKKLPPIDHIRVFGCTCYPLLKPYN 764

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQ---SSPSSPS 180
             +KL+PK    IF+G+   +KG++CY+P  +++I+SRHVIF E+ F F      S S+ +
Sbjct: 765  SNKLQPKTAPCIFIGFAIGYKGFICYSPVSQKSIISRHVIFDESKFYFKSIPTHSQSNVN 824

Query: 181  HTKSISDPNLLLTLLNLPQSSNSTSSQSP-TSNSPTADNTCSPFMDTNVTHQSLNVSSI- 240
            HT + S P  + T L+    + S S Q P     P+   TC+   DT++   S + ++I 
Sbjct: 825  HTNTQSLPCSMSTPLHTNLVTQSPSVQLPHLVLHPSPPATCTTTSDTSIPESSSSSTNID 884

Query: 241  -VDTGNAID----------------------------VFTTNAPTPR------------- 300
             + T N ID                            V   N P+P              
Sbjct: 885  HIPTDNTIDCTPASIPMHDTIVPVEFIDTPYIPISDIVLDINPPSPDSHNRMINFLPPSN 944

Query: 301  ---NTHAMQTREKSGIFKPKAFHITTTIPTL------TSYTETSKYPEWRNAMCEEFNAL 360
               N H M TR K+GI+K K F+      T+      TS+ +  K PEW++AM +E++AL
Sbjct: 945  LTVNDHPMMTRSKNGIYKKKVFYAANIAATVSANEEPTSHKQAMKIPEWKHAMQDEYDAL 1004

Query: 361  QAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSP 420
              QGTW LVP     NIV  KWVF++K N DG++ARHKARLVA+ + Q    D+DETFSP
Sbjct: 1005 LNQGTWILVPPQQQKNIVSCKWVFKLKKNADGTIARHKARLVARGFSQEEGTDYDETFSP 1064

Query: 421  VVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTGFQEKICLNHVCLLH 461
            VV+  T+R+ L+LAAQY W L Q+DVKNAFLH +L E +YM+QP GF+   C  HVC L 
Sbjct: 1065 VVRHTTVRLFLALAAQYQWRLYQMDVKNAFLHGVLKEEIYMAQPPGFENPSCPTHVCKLI 1124

BLAST of Cmc11g0301181 vs. NCBI nr
Match: BBG98573.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 408.7 bits (1049), Expect = 7.0e-110
Identity = 225/487 (46.20%), Postives = 297/487 (60.99%), Query Frame = 0

Query: 1   MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
           ++  +SD GGE+  +  +SF  SKGI HQ SCPYT +QNG+AERK+RH++ET ++L+  +
Sbjct: 80  VQFLQSDGGGEYISHMFKSFLASKGILHQLSCPYTPQQNGLAERKNRHLIETTLALLTTA 139

Query: 61  FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
            + L FW YA + A FLINRMPS  L+ LSP+  LFG  PDL  LK+F  A YPL +PYT
Sbjct: 140 GLSLPFWFYAVTHAAFLINRMPSRVLNMLSPYYKLFGGHPDLLSLKIFGSAVYPLLRPYT 199

Query: 121 KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF------VQSSPS 180
            HKLEP+  Q IFLGY   +KG LCY+    + ++SRHVI +E +FP+       Q+   
Sbjct: 200 AHKLEPRSYQCIFLGYSMGYKGVLCYDLRTHKVLISRHVIHNEDVFPYKTTQVSTQNQNQ 259

Query: 181 SPSHTKSISDPNLLLTLLNLPQ---------SSNSTSSQSPTSNSPTADNTCSP-FMDTN 240
           S   T +   P + + L ++PQ         SS+S  + S  S SP  DN   P F D  
Sbjct: 260 SSLSTSTSQSPPVAVILASMPQKSPSAPVLHSSSSFPNSSSISRSPVLDNQMLPVFTDAQ 319

Query: 241 V-THQSLNVSSIVDTGNAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFHITTTIPT-LT 300
           +     L  +S++D    +     +  +  N H MQTR KSGI + K F   ++  T LT
Sbjct: 320 LEVLLPLESASLIDNPGPLPA-QVHPASSINNHPMQTRSKSGIVQSKQFPEFSSFHTQLT 379

Query: 301 SYTETSK---------YPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYN 360
           S +E            +P W+ AM EE  AL  QGTW+LVP  P+ NIVG KW+F+IK N
Sbjct: 380 SISEPDTPSHFKQALGHPAWKQAMTEEIQALDQQGTWTLVPSPPNTNIVGCKWIFKIKKN 439

Query: 361 PDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNA 420
            DG+++R+KARLVA+ + Q +  D++ETFSPVV+  T+R+IL LA  + W L QLDVKNA
Sbjct: 440 ADGTISRYKARLVAQGFSQEYGLDYEETFSPVVRHTTVRLILGLAVNFQWELRQLDVKNA 499

Query: 421 FLHNILTETVYMSQPTGFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITS 461
           FLH  L E V+M QP GF +    NHVC L K  YGLKQAP AW  +FT YL TLGF  S
Sbjct: 500 FLHGELQEEVFMKQPQGFVDSQYPNHVCKLQKSLYGLKQAPRAWNAKFTGYLPTLGFSVS 559

BLAST of Cmc11g0301181 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 3.2e-97
Identity = 222/550 (40.36%), Postives = 285/550 (51.82%), Query Frame = 0

Query: 4    FRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHSFIP 63
            F SD+GGEF   +L  +F   GISH  S P+T E NG++ERKHRHIVET ++L+ H+ IP
Sbjct: 589  FYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIP 648

Query: 64   LEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYTKHK 123
              +WPYAF+ AV+LINR+P+P L   SPF+ LFG +P+   L+VF CACYP  +PY +HK
Sbjct: 649  KTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHK 708

Query: 124  LEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF---------VQ---- 183
            L+ K  Q +FLGY      YLC +    +  +SRHV F E  FPF         VQ    
Sbjct: 709  LDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRR 768

Query: 184  ----------------------------------SSPSSPSHTKSISDPNL--------- 243
                                              SSPS+P     +S  NL         
Sbjct: 769  ESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFP 828

Query: 244  -----LLTLLNLPQ-------------SSNSTSSQSPTSNSPT--ADNTCSPFMDTNVTH 303
                      N PQ             SS +TS  +PT+ SP+  A +  +P   ++ + 
Sbjct: 829  SSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSP 888

Query: 304  Q---SLNVSSIVDTGNAI---------DVFTTNAPTPRNTHAMQTREKSGIFKPKAFHIT 363
                S + SS   T  +I          +   N   P NTH+M TR K+GI KP   +  
Sbjct: 889  SPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSL 948

Query: 364  TTIPTLTSYTETS----KYPEWRNAMCEEFNALQAQGTWSLVPRHPS-MNIVGYKWVFRI 423
                   S   T+    K   WRNAM  E NA     TW LVP  PS + IVG +W+F  
Sbjct: 949  AVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTK 1008

Query: 424  KYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDV 461
            KYN DGS+ R+KARLVAK Y+Q    D+ ETFSPV+K  +IRI+L +A   SW + QLDV
Sbjct: 1009 KYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1068

BLAST of Cmc11g0301181 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 3.9e-95
Identity = 219/552 (39.67%), Postives = 277/552 (50.18%), Query Frame = 0

Query: 6    SDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHSFIPLE 65
            SD+GGEF    L+ +    GISH  S P+T E NG++ERKHRHIVE  ++L+ H+ +P  
Sbjct: 570  SDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKT 629

Query: 66   FWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYTKHKLE 125
            +WPYAFS AV+LINR+P+P L   SPF+ LFG  P+   LKVF CACYP  +PY +HKLE
Sbjct: 630  YWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLE 689

Query: 126  PKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF--------------VQS 185
             K  Q  F+GY      YLC +    +   SRHV F E  FPF                S
Sbjct: 690  DKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDS 749

Query: 186  SPSSPSHTKSISDPNLL---------------------------LTLLNLPQSS------ 245
            +P+ PSHT   + P +L                           ++  NLP SS      
Sbjct: 750  APNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSS 809

Query: 246  -----------------------------------NSTSSQSPTSNSPTADNTCS----P 305
                                               NS S  SP  NSP   +  S    P
Sbjct: 810  SEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIP 869

Query: 306  FMDTNVTHQSLNVSSIVDTG------NAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFH 365
               T+++  +   SS   T        A  +   NA  P NTH+M TR K GI KP   +
Sbjct: 870  TPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKY 929

Query: 366  ITTTIPTLTSYTETS----KYPEWRNAMCEEFNALQAQGTWSLV-PRHPSMNIVGYKWVF 425
               T     S   T+    K   WR AM  E NA     TW LV P  PS+ IVG +W+F
Sbjct: 930  SYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 989

Query: 426  RIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQL 461
              K+N DGS+ R+KARLVAK Y+Q    D+ ETFSPV+K  +IRI+L +A   SW + QL
Sbjct: 990  TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1049

BLAST of Cmc11g0301181 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-61
Identity = 159/471 (33.76%), Postives = 228/471 (48.41%), Query Frame = 0

Query: 1   MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
           +K  RSD+GGE+     + +  S GI H+K+ P T + NG+AER +R IVE   S++  +
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

Query: 61  FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
            +P  FW  A  TA +LINR PS  L    P            HLKVF C  +       
Sbjct: 604 KLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQ 663

Query: 121 KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHTK 180
           + KL+ K    IF+GY     GY  ++P  K+ I SR V+F E+    V+++       K
Sbjct: 664 RTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES---EVRTAADMSEKVK 723

Query: 181 SISDPNLLLTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVTHQSLNVSSIVDTGN 240
           +   PN     + +P +SN     +PTS   T D          V+ Q      +++ G 
Sbjct: 724 NGIIPN----FVTIPSTSN-----NPTSAESTTD---------EVSEQGEQPGEVIEQGE 783

Query: 241 AIDVFTTNAPTPRN--------THAMQTREKSGIFKPKAFHITTTIPTLTSYTETSKYPE 300
            +D        P            + + R +S  +    + + +      S  E   +PE
Sbjct: 784 QLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPE 843

Query: 301 ---WRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKD 360
                 AM EE  +LQ  GT+ LV        +  KWVF++K + D  + R+KARLV K 
Sbjct: 844 KNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKG 903

Query: 361 YHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPT 420
           + Q    DFDE FSPVVK  +IR ILSLAA     + QLDVK AFLH  L E +YM QP 
Sbjct: 904 FEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPE 963

Query: 421 GFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFF 461
           GF+     + VC L+K  YGLKQAP  W+ +F S++ +  ++ +  DP  +
Sbjct: 964 GFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVY 993

BLAST of Cmc11g0301181 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 190.3 bits (482), Expect = 5.1e-47
Identity = 151/531 (28.44%), Postives = 236/531 (44.44%), Query Frame = 0

Query: 7    DDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHSFIPLEF 66
            D+G E+  N ++ F   KGIS+  + P+T + NG++ER  R I E A +++  + +   F
Sbjct: 550  DNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSF 609

Query: 67   WPYAFSTAVFLINRMPSPSL--HTLSPFENLFGNTPDLRHLKVFECACYPLQKPYTKHKL 126
            W  A  TA +LINR+PS +L   + +P+E      P L+HL+VF    Y +     + K 
Sbjct: 610  WGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVY-VHIKNKQGKF 669

Query: 127  EPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHET--------IFPFVQSSPSSP 186
            + K  + IF+GY  N  G+  ++   ++ IV+R V+  ET         F  V    S  
Sbjct: 670  DDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKE 729

Query: 187  SHTKSISDPNLLLTLLNLPQSSN--------STSSQSPTSNSPTADNTCSPFMDTNVTHQ 246
            S  K+  + +  +     P  S           S +S   N P            N + +
Sbjct: 730  SENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKE 789

Query: 247  SLNVSSIVDTGNAIDVF---------------TTNAPTPRNTHAMQTRE---KSGIFKP- 306
              N+  + D+  +   F               +  +  P  +   +T E   + GI  P 
Sbjct: 790  CDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPT 849

Query: 307  ---------KAFHITTTIP--------------TLTSYTETSKYP-------------EW 366
                     +      T P               L ++T  +  P              W
Sbjct: 850  KNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSW 909

Query: 367  RNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQI 426
              A+  E NA +   TW++  R  + NIV  +WVF +KYN  G+  R+KARLVA+ + Q 
Sbjct: 910  EEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQK 969

Query: 427  HSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTGFQE 465
            +  D++ETF+PV +  + R ILSL  QY+  + Q+DVK AFL+  L E +YM  P G   
Sbjct: 970  YQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI-- 1029

BLAST of Cmc11g0301181 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-20
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 258 MQTREKSGIFK--PK-AFHITTTI-PTLTSYTETSKYPEWRNAMCEEFNALQAQGTWSLV 317
           M TR K+GI K  PK +  ITTTI     S     K P W  AM EE +AL    TW LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 318 PRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRI 377
           P   + NI+G KWVF+ K + DG++ R KARLVAK +HQ     F ET+SPVV+  TIR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 378 ILSLAAQ 381
           IL++A Q
Sbjct: 121 ILNVAQQ 127

BLAST of Cmc11g0301181 vs. ExPASy TrEMBL
Match: A0A2N9GRJ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124
Identity = 252/491 (51.32%), Postives = 315/491 (64.15%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +KV R+D GGE+ +++ +SF  ++GI HQ SCP+T +QNG+AERKHRHIVETA++LI  S
Sbjct: 652  IKVLRTDCGGEYTNSAFESFCSTRGILHQFSCPHTPQQNGVAERKHRHIVETALTLISES 711

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +PL++WPYAFSTA++LINRMP+P+L   SP++ LF   PD   LK F C C+PL +PY 
Sbjct: 712  SLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLFHTNPDYSFLKTFGCLCFPLLRPYN 771

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF-VQSSPSS---P 180
            KHKLEP+ +  +FLGY  N KGYLC N    + ++SRHV FHE  FPF  Q+SPSS   P
Sbjct: 772  KHKLEPRSSPCVFLGYALNAKGYLCLNLQTHKLLISRHVAFHENSFPFKSQTSPSSCSTP 831

Query: 181  SHT--------KSISDPNLLLTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVT-H 240
            S+T           + P++L    +LP  S ST   S   +        SP + T  + H
Sbjct: 832  SNTWLSSVLYFHPCTAPSILGPPPSLPPLSGSTPLSSSLPDVSAQTEPPSPLLHTTSSPH 891

Query: 241  QSLNVSSI-VDTGNAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFHITTTIPTL----T 300
             S  V S  V +G  +         P N+H MQTR KSGI K K    T T+  L     
Sbjct: 892  ISCPVPSCSVPSGPIL--------PPINSHPMQTRGKSGISKRKLLLHTKTLNPLETEPP 951

Query: 301  SYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHK 360
            SY   SKYPEW++AM +E+ ALQ Q TWSLVP   + NIVG KWV++IK  PDGSVAR+K
Sbjct: 952  SYKVASKYPEWQSAMLDEYTALQRQQTWSLVPPPSNHNIVGCKWVYKIKRKPDGSVARYK 1011

Query: 361  ARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTET 420
            ARLVAK YHQ    D+DETFSPVVK  T+R+ILS+AAQ+ WSL QLDV NAFLH +L E 
Sbjct: 1012 ARLVAKGYHQQAGLDYDETFSPVVKPATVRLILSIAAQFRWSLRQLDVSNAFLHGLLKED 1071

Query: 421  VYMSQPTGFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFFSF 474
            VYM QP GF +    +HVC L K  YGLKQAP AWF+RFTS L  LGF  S  DPS F +
Sbjct: 1072 VYMVQPQGFVDSSRPHHVCKLQKSLYGLKQAPRAWFERFTSQLLVLGFTASTADPSLFIY 1131

BLAST of Cmc11g0301181 vs. ExPASy TrEMBL
Match: A0A2N9FMC6 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16294 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124
Identity = 252/491 (51.32%), Postives = 315/491 (64.15%), Query Frame = 0

Query: 1   MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
           +KV R+D GGE+ +++ +SF  ++GI HQ SCP+T +QNG+AERKHRHIVETA++LI  S
Sbjct: 479 IKVLRTDCGGEYTNSAFESFCSTRGILHQFSCPHTPQQNGVAERKHRHIVETALTLISES 538

Query: 61  FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
            +PL++WPYAFSTA++LINRMP+P+L   SP++ LF   PD   LK F C C+PL +PY 
Sbjct: 539 SLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLFHTNPDYSFLKTFGCLCFPLLRPYN 598

Query: 121 KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF-VQSSPSS---P 180
           KHKLEP+ +  +FLGY  N KGYLC N    + ++SRHV FHE  FPF  Q+SPSS   P
Sbjct: 599 KHKLEPRSSPCVFLGYALNAKGYLCLNLQTHKLLISRHVAFHENSFPFKSQTSPSSCSTP 658

Query: 181 SHT--------KSISDPNLLLTLLNLPQSSNSTSSQSPTSNSPTADNTCSPFMDTNVT-H 240
           S+T           + P++L    +LP  S ST   S   +        SP + T  + H
Sbjct: 659 SNTWLSSVLYFHPCTAPSILGPPPSLPPLSGSTPLSSSLPDVSAQTEPPSPLLHTTSSPH 718

Query: 241 QSLNVSSI-VDTGNAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFHITTTIPTL----T 300
            S  V S  V +G  +         P N+H MQTR KSGI K K    T T+  L     
Sbjct: 719 ISCPVPSCSVPSGPIL--------PPINSHPMQTRGKSGISKRKLLLHTKTLNPLETEPP 778

Query: 301 SYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHK 360
           SY   SKYPEW++AM +E+ ALQ Q TWSLVP   + NIVG KWV++IK  PDGSVAR+K
Sbjct: 779 SYKVASKYPEWQSAMLDEYTALQRQQTWSLVPPPSNHNIVGCKWVYKIKRKPDGSVARYK 838

Query: 361 ARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTET 420
           ARLVAK YHQ    D+DETFSPVVK  T+R+ILS+AAQ+ WSL QLDV NAFLH +L E 
Sbjct: 839 ARLVAKGYHQQAGLDYDETFSPVVKPATVRLILSIAAQFRWSLRQLDVSNAFLHRLLKED 898

Query: 421 VYMSQPTGFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFFSF 474
           VYM QP GF +    +HVC L K  YGLKQAP AWF+RFTS L  LGF  S  DPS F +
Sbjct: 899 VYMVQPQGFVDSSRPHHVCKLQKSLYGLKQAPRAWFERFTSQLLVLGFTASTADPSLFIY 958

BLAST of Cmc11g0301181 vs. ExPASy TrEMBL
Match: A0A2N9FSZ9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21729 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 8.5e-122
Identity = 235/473 (49.68%), Postives = 307/473 (64.90%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +K+ R+D GGE+  +  QSF  S G+ HQ +CP+T +QNG+AERKHRHIV+  ++L+  +
Sbjct: 676  LKILRTDCGGEYSKHEFQSFCSSTGVLHQFTCPHTSQQNGVAERKHRHIVDKGLTLMSQA 735

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +PL FWPYAFST+VFLINR+PSP    +SP+E LFG+ P     + F CACYPL +PY+
Sbjct: 736  SLPLTFWPYAFSTSVFLINRLPSPHRGFISPWERLFGSLPSYNSFRSFGCACYPLLRPYS 795

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPF--VQSSPS---S 180
            KHKL P+  Q +FLGYP N KG+LC++P   +  VSRHV F ET+FPF  + SSPS    
Sbjct: 796  KHKLLPQSVQCVFLGYPSNAKGFLCFDPISSRFFVSRHVKFDETVFPFPKISSSPSLNQP 855

Query: 181  PSHTKSISDPNLLLTLLNL-PQSSNSTSSQSPTSNSPTADNTCSPFMDTNVTHQSLNVSS 240
            P H++S S+P  L TLL   P S  S     P SN  T  +T  P +  ++   +++   
Sbjct: 856  PVHSQS-SNPAWLSTLLYFHPCSVPSILGAPPCSN--TTPDTLVPHIPVSIP-STVSAPL 915

Query: 241  IVDTGNAIDVFTTNAPTPRNTHAMQTREKSGIFKPKAFHITTTIPTL-----TSYTETSK 300
             + T     + ++  P   N+H MQTR KSGI K K   +T T P        S+     
Sbjct: 916  SMPTPVHSPLSSSTDPLAVNSHPMQTRAKSGISKKKQVLLTATAPDYLTTEPPSFAVARH 975

Query: 301  YPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKD 360
             P+W +AM  EF ALQ Q TWSLVP  P  +I+G  WVF++K N DGSVAR+KARLVA+ 
Sbjct: 976  IPQWHDAMASEFAALQRQSTWSLVPPSPDQHIIGCHWVFKLKRNSDGSVARYKARLVAQG 1035

Query: 361  YHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPT 420
             HQ+   DFDETFSPVVK  T+R++LS+AAQ+ WSL QLDV NAFLH  L E VYM QP 
Sbjct: 1036 NHQLPGIDFDETFSPVVKPATVRLMLSIAAQHQWSLRQLDVSNAFLHGSLKECVYMRQPP 1095

Query: 421  GFQEKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDPSFFSF 463
            GF +    +HVC LHK  YGL+QAP AWF++F+S+L T+GF  S  DPS F +
Sbjct: 1096 GFVDTASPSHVCFLHKSIYGLRQAPRAWFEKFSSHLLTIGFTASQADPSLFLY 1144

BLAST of Cmc11g0301181 vs. ExPASy TrEMBL
Match: A0A2N9FSD8 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17741 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 5.5e-121
Identity = 241/524 (45.99%), Postives = 314/524 (59.92%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +K+ R+D GGEF   +   F  + GI HQ SCP+T +QNG+AERKHRH+++ A++L+  S
Sbjct: 663  IKILRTDCGGEFTSTAFNQFCANHGILHQLSCPHTPQQNGVAERKHRHLIQCALALLSES 722

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +P+ FW +A STA  ++NR+P+P+L   +P+E LF   PD+ H + F C C+PL  PYT
Sbjct: 723  KLPISFWSHAVSTATHIVNRLPTPNLKHKTPWELLFQKPPDISHFRSFGCQCFPLLTPYT 782

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHT- 180
             HKL+PK    +FLGYP N KGYLC +P  K+   SRHV+F+E IFP +  +P++ + T 
Sbjct: 783  THKLQPKTIPCVFLGYPSNTKGYLCLDPLTKRVYTSRHVLFNELIFPGLMHTPATSASTA 842

Query: 181  -KSISDPNLLLTLLNLPQSSNSTS----------------------SQSPTSNSP----- 240
              SIS    L TLL+L   S++T+                      S  P  N P     
Sbjct: 843  SDSISPDTWLNTLLSLHNCSHTTAVNPSLSSELCPAPIDQSHPCADSDIPAPNPPQISIH 902

Query: 241  -----------------TADNTCSPF--MDTNVTHQSLNVSSIVDTGNAIDVFTTNAPTP 300
                             TA  + SP     T+ TH   +V ++    +      T AP P
Sbjct: 903  TPHTISLPTSPTILPTDTASISVSPIESHSTSSTHSLPSVPTVTSAPS-----PTAAPAP 962

Query: 301  RNTHAMQTREKSGIFKPKAFH---ITTTIPTLTSYTETSKYPEWRNAMCEEFNALQAQGT 360
              +H MQTR KSGIFKPK  +   + +T+   TSYT  SK+P+W  AM EEF AL  QGT
Sbjct: 963  FLSHPMQTRSKSGIFKPKVSYTAQVDSTLTEPTSYTAASKHPQWCTAMTEEFQALHKQGT 1022

Query: 361  WSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKP 420
            W+LVP  PS NIVG KWV+++KY+ DG++ARHKARLVAK +HQ H  DFDETFSPVVK P
Sbjct: 1023 WTLVPPPPSKNIVGCKWVYKLKYHSDGTLARHKARLVAKGFHQQHGVDFDETFSPVVKAP 1082

Query: 421  TIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTGFQEKICLNHVCLLHKGFYG 474
            T+R+ILSLA    WSL QLDVKNAFLH  L E VYM+QP GF +    +HVC L K  YG
Sbjct: 1083 TVRLILSLAVSLGWSLRQLDVKNAFLHGSLKEEVYMTQPQGFIDPQHPSHVCKLLKSIYG 1142

BLAST of Cmc11g0301181 vs. ExPASy TrEMBL
Match: A0A2N9GWH7 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31817 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 5.5e-121
Identity = 241/524 (45.99%), Postives = 314/524 (59.92%), Query Frame = 0

Query: 1    MKVFRSDDGGEFCDNSLQSFFESKGISHQKSCPYTLEQNGIAERKHRHIVETAISLIFHS 60
            +K+ R+D GGEF   +   F  + GI HQ SCP+T +QNG+AERKHRH+++ A++L+  S
Sbjct: 625  IKILRTDCGGEFTSTAFNQFCANHGILHQLSCPHTPQQNGVAERKHRHLIQCALALLSES 684

Query: 61   FIPLEFWPYAFSTAVFLINRMPSPSLHTLSPFENLFGNTPDLRHLKVFECACYPLQKPYT 120
             +P+ FW +A STA  ++NR+P+P+L   +P+E LF   PD+ H + F C C+PL  PYT
Sbjct: 685  KLPISFWSHAVSTATHIVNRLPTPNLKHKTPWELLFQKPPDISHFRSFGCQCFPLLTPYT 744

Query: 121  KHKLEPKITQHIFLGYPHNFKGYLCYNPSVKQTIVSRHVIFHETIFPFVQSSPSSPSHT- 180
             HKL+PK    +FLGYP N KGYLC +P  K+   SRHV+F+E IFP +  +P++ + T 
Sbjct: 745  THKLQPKTIPCVFLGYPSNTKGYLCLDPLTKRVYTSRHVLFNELIFPGLMHTPATSASTA 804

Query: 181  -KSISDPNLLLTLLNLPQSSNSTS----------------------SQSPTSNSP----- 240
              SIS    L TLL+L   S++T+                      S  P  N P     
Sbjct: 805  SDSISPDTWLNTLLSLHNCSHTTAVNPSLSSELCPAPIDQSHPCADSDIPAPNPPQISIH 864

Query: 241  -----------------TADNTCSPF--MDTNVTHQSLNVSSIVDTGNAIDVFTTNAPTP 300
                             TA  + SP     T+ TH   +V ++    +      T AP P
Sbjct: 865  TPHTISLPTSPTILPTDTASISVSPIESHSTSSTHSLPSVPTVTSAPS-----PTAAPAP 924

Query: 301  RNTHAMQTREKSGIFKPKAFH---ITTTIPTLTSYTETSKYPEWRNAMCEEFNALQAQGT 360
              +H MQTR KSGIFKPK  +   + +T+   TSYT  SK+P+W  AM EEF AL  QGT
Sbjct: 925  FLSHPMQTRSKSGIFKPKVSYTAQVDSTLTEPTSYTAASKHPQWCTAMTEEFQALHKQGT 984

Query: 361  WSLVPRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKP 420
            W+LVP  PS NIVG KWV+++KY+ DG++ARHKARLVAK +HQ H  DFDETFSPVVK P
Sbjct: 985  WTLVPPPPSKNIVGCKWVYKLKYHSDGTLARHKARLVAKGFHQQHGVDFDETFSPVVKAP 1044

Query: 421  TIRIILSLAAQYSWSLTQLDVKNAFLHNILTETVYMSQPTGFQEKICLNHVCLLHKGFYG 474
            T+R+ILSLA    WSL QLDVKNAFLH  L E VYM+QP GF +    +HVC L K  YG
Sbjct: 1045 TVRLILSLAVSLGWSLRQLDVKNAFLHGSLKEEVYMTQPQGFIDPQHPSHVCKLLKSIYG 1104

BLAST of Cmc11g0301181 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-39
Identity = 77/183 (42.08%), Postives = 114/183 (62.30%), Query Frame = 0

Query: 282 TSYTETSKYPEWRNAMCEEFNALQAQGTWSLVPRHPSMNIVGYKWVFRIKYNPDGSVARH 341
           ++Y E  ++  W  AM +E  A++   TW +    P+   +G KWV++IKYN DG++ R+
Sbjct: 87  STYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERY 146

Query: 342 KARLVAKDYHQIHSFDFDETFSPVVKKPTIRIILSLAAQYSWSLTQLDVKNAFLHNILTE 401
           KARLVAK Y Q    DF ETFSPV K  ++++IL+++A Y+++L QLD+ NAFL+  L E
Sbjct: 147 KARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDE 206

Query: 402 TVYMSQPTGFQ----EKICLNHVCLLHKGFYGLKQAPHAWFKRFTSYLFTLGFITSNVDP 461
            +YM  P G+     + +  N VC L K  YGLKQA   WF +F+  L   GF+ S+ D 
Sbjct: 207 EIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDH 266

BLAST of Cmc11g0301181 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-21
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 258 MQTREKSGIFK--PK-AFHITTTI-PTLTSYTETSKYPEWRNAMCEEFNALQAQGTWSLV 317
           M TR K+GI K  PK +  ITTTI     S     K P W  AM EE +AL    TW LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 318 PRHPSMNIVGYKWVFRIKYNPDGSVARHKARLVAKDYHQIHSFDFDETFSPVVKKPTIRI 377
           P   + NI+G KWVF+ K + DG++ R KARLVAK +HQ     F ET+SPVV+  TIR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 378 ILSLAAQ 381
           IL++A Q
Sbjct: 121 ILNVAQQ 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TQE09310.14.4e-11247.55hypothetical protein C1H46_005046 [Malus baccata][more]
PKU68501.11.7e-11146.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
TQE01264.16.3e-11147.46hypothetical protein C1H46_013171 [Malus baccata][more]
PRQ49208.11.4e-11043.60putative RNA-directed DNA polymerase [Rosa chinensis][more]
BBG98573.17.0e-11046.20transposable element gene [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Q94HW23.2e-9740.36Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.9e-9539.67Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109783.6e-6133.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041465.1e-4728.44Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925202.4e-2049.61Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A2N9GRJ01.1e-12451.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1[more]
A0A2N9FMC61.1e-12451.32Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9FSZ98.5e-12249.68Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21729 PE=4 SV=1[more]
A0A2N9FSD85.5e-12145.99Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9GWH75.5e-12145.99Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.1e-3942.08cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.11.7e-2149.61Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 309..456
e-value: 5.0E-39
score: 134.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..111
e-value: 6.2E-22
score: 79.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..218
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 4..460
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..99
score: 14.698673
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 309..451
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0301181.1Cmc11g0301181.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding