Cmc11g0300661 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0300661
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr11: 20962112 .. 20962606 (+)
RNA-Seq ExpressionCmc11g0300661
SyntenyCmc11g0300661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAAAGAGTGCTTTCCTGAACAGTTATTTAAACGAAGAAGTCTATGTTCCACAACCTAAGGGATTTATCGTATCTGAATATCCTCAACATGTGTATAAGCTTAATAAAGCTTTATATGGGCTTAAGCAAGCCCTTAGAGCTTGGTACGAACGATTGACAATTTATTTAAGTTGTAAAGGGTATTTCAGAGACGGAGTTGACAAAAAATTATTTATTCACAGAACAAATGATGAACTCATTGTTGCACAAATCTATGTTGATGATATCATTTTTAGGGGTTTTCCTCAAGGTCTTGTTAATAACTTCATTGATATCATGAAGTCAGAATTTGAGATGAGCATGGAGGGAGAACTATCATGTTTTCTGGGGTTTCAAATCAAGCAGAAAAGTGAAGGTATATTCATATCTCAAGAAAAGTATGTCAAGAACATAGTTAAAATATTCGGGTTAGAACAGTCTCGACACAAAAGGACTCCAACTGCGACATAA

mRNA sequence

ATGGATGTAAAGAGTGCTTTCCTGAACAGTTATTTAAACGAAGAAGTCTATGTTCCACAACCTAAGGGATTTATCGTATCTGAATATCCTCAACATGTGTATAAGCTTAATAAAGCTTTATATGGGCTTAAGCAAGCCCTTAGAGCTTGGTACGAACGATTGACAATTTATTTAAGTTGTAAAGGGTATTTCAGAGACGGAGTTGACAAAAAATTATTTATTCACAGAACAAATGATGAACTCATTGTTGCACAAATCTATGTTGATGATATCATTTTTAGGGGTTTTCCTCAAGGTCTTGTTAATAACTTCATTGATATCATGAAGTCAGAATTTGAGATGAGCATGGAGGGAGAACTATCATGTTTTCTGGGGTTTCAAATCAAGCAGAAAAGTGAAGGTATATTCATATCTCAAGAAAAGTATGTCAAGAACATAGTTAAAATATTCGGGTTAGAACAGTCTCGACACAAAAGGACTCCAACTGCGACATAA

Coding sequence (CDS)

ATGGATGTAAAGAGTGCTTTCCTGAACAGTTATTTAAACGAAGAAGTCTATGTTCCACAACCTAAGGGATTTATCGTATCTGAATATCCTCAACATGTGTATAAGCTTAATAAAGCTTTATATGGGCTTAAGCAAGCCCTTAGAGCTTGGTACGAACGATTGACAATTTATTTAAGTTGTAAAGGGTATTTCAGAGACGGAGTTGACAAAAAATTATTTATTCACAGAACAAATGATGAACTCATTGTTGCACAAATCTATGTTGATGATATCATTTTTAGGGGTTTTCCTCAAGGTCTTGTTAATAACTTCATTGATATCATGAAGTCAGAATTTGAGATGAGCATGGAGGGAGAACTATCATGTTTTCTGGGGTTTCAAATCAAGCAGAAAAGTGAAGGTATATTCATATCTCAAGAAAAGTATGTCAAGAACATAGTTAAAATATTCGGGTTAGAACAGTCTCGACACAAAAGGACTCCAACTGCGACATAA

Protein sequence

MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSCKGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGELSCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT
Homology
BLAST of Cmc11g0300661 vs. NCBI nr
Match: KAA0053124.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 132/163 (80.98%), Postives = 139/163 (85.28%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEV V QPKGFI SE+PQHVYKLNK LYGLKQA  AWY++LTIYLSC
Sbjct: 108 MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVYKLNKPLYGLKQAPTAWYDQLTIYLSC 167

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R G DK LF+H TND LIVAQIYVDDIIF GFPQ L+NNFIDIMKSEFEMSM GE 
Sbjct: 168 KGYSRCGADKTLFVHITNDNLIVAQIYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEF 227

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTA 164
           SC LG QIKQ+SE IFISQEKY KNIVK FGLEQS+HK TP A
Sbjct: 228 SCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA 270

BLAST of Cmc11g0300661 vs. NCBI nr
Match: KAA0059680.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 128/164 (78.05%), Postives = 142/164 (86.59%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEE+Y  QPKGF  SE+PQHVYKLNKALYG+KQA R WYERLTIYL C
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGYF+ G DK LFI+RT+++LIVAQIY DDIIFRGFP+ L++NFIDIMKSEFEMSM GEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
            CFL  QIKQ+SEGIF+SQEKY K+ VK FGLEQSRHKRTP  T
Sbjct: 121 FCFLSLQIKQRSEGIFMSQEKYAKHTVKKFGLEQSRHKRTPATT 164

BLAST of Cmc11g0300661 vs. NCBI nr
Match: KAA0041780.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 125/164 (76.22%), Postives = 145/164 (88.41%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEVY+ QPKGF  S++P+HVYKLNKALYGLKQA RAWY+RLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYLAQPKGFFDSQHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R  +DK LFIHR +D+L+VAQIYVDDIIFRGFPQ L+NNFI+IM+SEFEMSM GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLG QIKQK++GIF+SQEKY +N+VK FGLEQ+R+KRTP  T
Sbjct: 121 SCFLGLQIKQKNDGIFMSQEKYARNMVKKFGLEQARNKRTPATT 164

BLAST of Cmc11g0300661 vs. NCBI nr
Match: KAA0053137.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 124/164 (75.61%), Postives = 145/164 (88.41%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           +DVKS FLN YLNEEVYV QPKGF+ SE+P+HVYKLNKALYGLKQALRAWY+RLT+YL  
Sbjct: 533 IDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALRAWYDRLTVYLRG 592

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           +GY R  +DK LFIHR +D+L+VAQIYVDDIIF GFP  L+NNFI+IM+SEFEMSM GEL
Sbjct: 593 RGYSRGEIDKILFIHRKSDQLLVAQIYVDDIIFGGFPLDLINNFINIMQSEFEMSMVGEL 652

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLG QIKQK++GIFISQEKY +N+VK FGL+Q+R+KRTP AT
Sbjct: 653 SCFLGLQIKQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAAT 696

BLAST of Cmc11g0300661 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 125/164 (76.22%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEVYV QPK F+ SE+P+HVYKLNKALYGLKQA R WYERLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R  +DK LFIHR +D+L+VAQIYVDDIIF GFP  LVNNFI+IM+SEFEMSM GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLGFQIKQK++ I ISQ+KY KN+ K FGLEQ+R+KRTP AT
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAAT 164

BLAST of Cmc11g0300661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-25
Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 0

Query: 1    MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
            +DV +AFL   L ++VY+ QP GFI  + P +V KL KALYGLKQA RAWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
             G+     D  LF+ +    ++   +YVDDI+  G    L++N +D +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTA 164
              FLG + K+   G+ +SQ +Y+ +++    +  ++   TP A
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMA 1226

BLAST of Cmc11g0300661 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-25
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 0

Query: 1    MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
            +DV +AFL   L +EVY+ QP GF+  + P +V +L KA+YGLKQA RAWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
             G+     D  LF+ +    +I   +YVDDI+  G    L+ + +D +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
              FLG + K+  +G+ +SQ +Y  +++    +  ++   TP AT
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMAT 1210

BLAST of Cmc11g0300661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 57/166 (34.34%), Postives = 97/166 (58.43%), Query Frame = 0

Query: 1    MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
            +DVK+AFL+  L EE+Y+ QP+GF V+     V KLNK+LYGLKQA R WY +   ++  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYFRDGVDKKLFIHR-TNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGE 120
            + Y +   D  ++  R + +  I+  +YVDD++  G  +GL+      +   F+M   G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGFQI--KQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTA 164
                LG +I  ++ S  +++SQEKY++ +++ F ++ ++   TP A
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLA 1086

BLAST of Cmc11g0300661 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 0

Query: 1    MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
            MDVK+AFLN  L EE+Y+  P+G  +S    +V KLNKA+YGLKQA R W+E     L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYFRDGVDKKLFI--HRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEG 120
              +    VD+ ++I      +E I   +YVDD++        +NNF   +  +F M+   
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTP 162
            E+  F+G +I+ + + I++SQ  YVK I+  F +E      TP
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTP 1161

BLAST of Cmc11g0300661 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 51/162 (31.48%), Postives = 80/162 (49.38%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDV +AFLNS ++E +YV QP GF+    P +V++L   +YGLKQA   W E +   L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
            G+ R   +  L+   T+D  I   +YVDD++       + +     +   + M   G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGFQIKQKSEG-IFISQEKYVKNIVKIFGLEQSRHKRTP 162
             FLG  I Q S G I +S + Y+        +   +  +TP
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTP 162

BLAST of Cmc11g0300661 vs. ExPASy TrEMBL
Match: A0A5A7UCZ0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00190 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.5e-68
Identity = 132/163 (80.98%), Postives = 139/163 (85.28%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEV V QPKGFI SE+PQHVYKLNK LYGLKQA  AWY++LTIYLSC
Sbjct: 108 MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVYKLNKPLYGLKQAPTAWYDQLTIYLSC 167

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R G DK LF+H TND LIVAQIYVDDIIF GFPQ L+NNFIDIMKSEFEMSM GE 
Sbjct: 168 KGYSRCGADKTLFVHITNDNLIVAQIYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEF 227

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTA 164
           SC LG QIKQ+SE IFISQEKY KNIVK FGLEQS+HK TP A
Sbjct: 228 SCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA 270

BLAST of Cmc11g0300661 vs. ExPASy TrEMBL
Match: A0A5A7UX16 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00310 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.1e-68
Identity = 128/164 (78.05%), Postives = 142/164 (86.59%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEE+Y  QPKGF  SE+PQHVYKLNKALYG+KQA R WYERLTIYL C
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGYF+ G DK LFI+RT+++LIVAQIY DDIIFRGFP+ L++NFIDIMKSEFEMSM GEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
            CFL  QIKQ+SEGIF+SQEKY K+ VK FGLEQSRHKRTP  T
Sbjct: 121 FCFLSLQIKQRSEGIFMSQEKYAKHTVKKFGLEQSRHKRTPATT 164

BLAST of Cmc11g0300661 vs. ExPASy TrEMBL
Match: A0A5D3DU96 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00670 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 125/164 (76.22%), Postives = 145/164 (88.41%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEVY+ QPKGF  S++P+HVYKLNKALYGLKQA RAWY+RLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYLAQPKGFFDSQHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRG 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R  +DK LFIHR +D+L+VAQIYVDDIIFRGFPQ L+NNFI+IM+SEFEMSM GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLG QIKQK++GIF+SQEKY +N+VK FGLEQ+R+KRTP  T
Sbjct: 121 SCFLGLQIKQKNDGIFMSQEKYARNMVKKFGLEQARNKRTPATT 164

BLAST of Cmc11g0300661 vs. ExPASy TrEMBL
Match: A0A5D3BPB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001130 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.7e-66
Identity = 124/164 (75.61%), Postives = 145/164 (88.41%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           +DVKS FLN YLNEEVYV QPKGF+ SE+P+HVYKLNKALYGLKQALRAWY+RLT+YL  
Sbjct: 533 IDVKSTFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALRAWYDRLTVYLRG 592

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           +GY R  +DK LFIHR +D+L+VAQIYVDDIIF GFP  L+NNFI+IM+SEFEMSM GEL
Sbjct: 593 RGYSRGEIDKILFIHRKSDQLLVAQIYVDDIIFGGFPLDLINNFINIMQSEFEMSMVGEL 652

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLG QIKQK++GIFISQEKY +N+VK FGL+Q+R+KRTP AT
Sbjct: 653 SCFLGLQIKQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAAT 696

BLAST of Cmc11g0300661 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 125/164 (76.22%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIVSEYPQHVYKLNKALYGLKQALRAWYERLTIYLSC 60
           MDVKSAFLN YLNEEVYV QPK F+ SE+P+HVYKLNKALYGLKQA R WYERLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKDFVDSEHPKHVYKLNKALYGLKQAPRVWYERLTVYLRG 60

Query: 61  KGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGEL 120
           KGY R  +DK LFIHR +D+L+VAQIYVDDIIF GFP  LVNNFI+IM+SEFEMSM GEL
Sbjct: 61  KGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGFQIKQKSEGIFISQEKYVKNIVKIFGLEQSRHKRTPTAT 165
           SCFLGFQIKQK++ I ISQ+KY KN+ K FGLEQ+R+KRTP AT
Sbjct: 121 SCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAAT 164

BLAST of Cmc11g0300661 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-18
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 0

Query: 1   MDVKSAFLNSYLNEEVYVPQPKGFIV----SEYPQHVYKLNKALYGLKQALRAWYERLTI 60
           +D+ +AFLN  L+EE+Y+  P G+      S  P  V  L K++YGLKQA R W+ + ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLSCKGYFRDGVDKKLFIHRTNDELIVAQIYVDDIIFRGFPQGLVNNFIDIMKSEFEMSM 120
            L   G+ +   D   F+  T    +   +YVDDII        V+     +KS F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 EGELSCFLGFQIKQKSEGIFISQEKYVKNIVKIFGL 153
            G L  FLG +I + + GI I Q KY  +++   GL
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGL 348

BLAST of Cmc11g0300661 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0

Query: 86  IYVDDIIFRGFPQGLVNNFIDIMKSEFEMSMEGELSCFLGFQIKQKSEGIFISQEKYVKN 145
           +YVDDI+  G    L+N  I  + S F M   G +  FLG QIK    G+F+SQ KY + 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 IVKIFGLEQSRHKRTP 162
           I+   G+   +   TP
Sbjct: 65  ILNNAGMLDCKPMSTP 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053124.11.1e-6780.98putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag... [more]
KAA0059680.11.5e-6778.05putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag... [more]
KAA0041780.12.1e-6676.22gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [... [more]
KAA0053137.11.8e-6575.61gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [... [more]
TYK23188.11.2e-6476.22gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q94HW22.5e-2536.81Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.5e-2535.37Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.5e-2234.34Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.7e-2136.81Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256003.6e-1631.48Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5A7UCZ05.5e-6880.98Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7UX167.1e-6878.05Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5D3DU961.0e-6676.22Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G0... [more]
A0A5D3BPB38.7e-6675.61Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G... [more]
A0A5D3DI975.7e-6576.22Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.9e-1833.97cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.8e-0738.16DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..162
e-value: 5.4E-41
score: 140.8
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..161
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 1..161
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0300661.1Cmc11g0300661.1mRNA