Cmc11g0298621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0298621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	BED-type domain-containing protein
Location	CMiso1.1chr11: 18513454 .. 18513783 (+)
RNA-Seq Expression	Cmc11g0298621
Synteny	Cmc11g0298621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGAAGGCGAGTAGTTCAGACTATTTTGTTGGCTAGTTTTTGGACTACAATTGTGTTTACTCTTAAAGTATCTGGCCCACTAGTTCGAGTTCTTAGATTGGTTGATGGTGAAAAGAAGCCACCTATGGGATATATTTATGAGGCCATGGATAGAGCTAAAGAAGCTATTGCTAAGTCGTTCAATAATAATGAAGAAAAATACAAGGACATTTTCACCATAATTATAGAAGATGGGAGCTTCAGTTGCATCGTCCTCTGCATGCAGCGGGGTATTATTTAA

mRNA sequence

ATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGAAGGCGAGTAGTTCAGACTATTTTGTTGGCTAGTTTTTGGACTACAATTGTGTTTACTCTTAAAGTATCTGGCCCACTAGTTCGAGTTCTTAGATTGGTTGATGGTGAAAAGAAGCCACCTATGGGATATATTTATGAGGCCATGGATAGAGCTAAAGAAGCTATTGCTAAGTCGTTCAATAATAATGAAGAAAAATACAAGGACATTTTCACCATAATTATAGAAGATGGGAGCTTCAGTTGCATCGTCCTCTGCATGCAGCGGGGTATTATTTAA

Coding sequence (CDS)

ATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGAAGGCGAGTAGTTCAGACTATTTTGTTGGCTAGTTTTTGGACTACAATTGTGTTTACTCTTAAAGTATCTGGCCCACTAGTTCGAGTTCTTAGATTGGTTGATGGTGAAAAGAAGCCACCTATGGGATATATTTATGAGGCCATGGATAGAGCTAAAGAAGCTATTGCTAAGTCGTTCAATAATAATGAAGAAAAATACAAGGACATTTTCACCATAATTATAGAAGATGGGAGCTTCAGTTGCATCGTCCTCTGCATGCAGCGGGGTATTATTTAA

Protein sequence

MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMGYIYEAMDRAKEAIAKSFNNNEEKYKDIFTIIIEDGSFSCIVLCMQRGII

Homology

[Close]

BLAST of Cmc11g0298621 vs. NCBI nr
Match: KAA0062061.1 (hypothetical protein E6C27_scaffold89G004030 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.2e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. NCBI nr
Match: KAA0062060.1 (hypothetical protein E6C27_scaffold89G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.2e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 312 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 371

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 372 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 402

[Close]

BLAST of Cmc11g0298621 vs. NCBI nr
Match: KAA0068068.1 (hypothetical protein E6C27_scaffold238G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.4e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. NCBI nr
Match: TYK26052.1 (hypothetical protein E5676_scaffold1185G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.4e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. NCBI nr
Match: TYK28304.1 (hypothetical protein E5676_scaffold600G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.4e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL
Match: A0A5A7V434 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004020 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 312 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 371

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 372 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 402

[Close]

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL
Match: A0A5A7V8P5 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004030 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL
Match: A0A5A7TY62 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001320 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL
Match: A0A5D3DXN3 (BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001270 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 403 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 462

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 463 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 493

[Close]

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL
Match: A0A5A7U370 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00840 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVF LKVSGPLVRVLRLVDGEKKPPMG
Sbjct: 362 MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFALKVSGPLVRVLRLVDGEKKPPMG 421

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII
Sbjct: 422 YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 452

[Close]

BLAST of Cmc11g0298621 vs. TAIR 10
Match: AT5G33406.1 (hAT dimerisation domain-containing protein / transposase-related )

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           M  SDEW  SKW+KE  G ++       SFW  ++  LK+ GPL++VLR+VDGE+KPPMG
Sbjct: 39  MVHSDEWNASKWTKEAGGMKIKSFFFQESFWKNVLHALKLGGPLIQVLRMVDGERKPPMG 98

Query: 61  YIYEAMDRAKEAIAKSFNNNEEKYKDIFTII 92
           YIY AMD+AKE I KSF   EE YK  F II
Sbjct: 99  YIYGAMDQAKETIMKSFTYKEENYKMAFEII 129

[Close]

BLAST of Cmc11g0298621 vs. TAIR 10
Match: AT3G22220.1 (hAT transposon superfamily )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           M TS EW D  +SKE  G  + +TI    FW  +     ++ P++RVLR+V  E+KP MG
Sbjct: 432 MVTSSEWNDCSYSKEAGGLAMTETINDEDFWKALTLANHITAPILRVLRIVCSERKPAMG 491

Query: 61  YIYEAMDRAKEAIAKSFNNNEE 83
           Y+Y AM RAKEAI  +  + EE
Sbjct: 492 YVYAAMYRAKEAIKTNLAHREE 513

[Close]

BLAST of Cmc11g0298621 vs. TAIR 10
Match: AT3G22220.2 (hAT transposon superfamily )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           M TS EW D  +SKE  G  + +TI    FW  +     ++ P++RVLR+V  E+KP MG
Sbjct: 432 MVTSSEWNDCSYSKEAGGLAMTETINDEDFWKALTLANHITAPILRVLRIVCSERKPAMG 491

Query: 61  YIYEAMDRAKEAIAKSFNNNEE 83
           Y+Y AM RAKEAI  +  + EE
Sbjct: 492 YVYAAMYRAKEAIKTNLAHREE 513

[Close]

BLAST of Cmc11g0298621 vs. TAIR 10
Match: AT4G15020.1 (hAT transposon superfamily )

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           M TS EW +  +S+E  G  V+  +   +FW  +     ++ PL+R LR+V  EK+P MG
Sbjct: 436 MVTSAEWNECSYSEEPSG-LVMNALTDEAFWKAVALVNHLTSPLLRALRIVCSEKRPAMG 495

Query: 61  YIYEAMDRAKEAIAKSFNNNEE 83
           Y+Y A+ RAK+AI     N E+
Sbjct: 496 YVYAALYRAKDAIKTHLVNRED 516

[Close]

BLAST of Cmc11g0298621 vs. TAIR 10
Match: AT4G15020.2 (hAT transposon superfamily )

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1   MFTSDEWKDSKWSKEQQGRRVVQTILLASFWTTIVFTLKVSGPLVRVLRLVDGEKKPPMG 60
           M TS EW +  +S+E  G  V+  +   +FW  +     ++ PL+R LR+V  EK+P MG
Sbjct: 436 MVTSAEWNECSYSEEPSG-LVMNALTDEAFWKAVALVNHLTSPLLRALRIVCSEKRPAMG 495

Query: 61  YIYEAMDRAKEAIAKSFNNNEE 83
           Y+Y A+ RAK+AI     N E+
Sbjct: 496 YVYAALYRAKDAIKTHLVNRED 516

The following BLAST results are available for this feature:

BLAST of Cmc11g0298621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062061.1	2.2e-43	100.00	hypothetical protein E6C27_scaffold89G004030 [Cucumis melo var. makuwa]	[more]
KAA0062060.1	2.2e-43	100.00	hypothetical protein E6C27_scaffold89G004020 [Cucumis melo var. makuwa]	[more]
KAA0068068.1	8.4e-43	98.90	hypothetical protein E6C27_scaffold238G00160 [Cucumis melo var. makuwa]	[more]
TYK26052.1	8.4e-43	98.90	hypothetical protein E5676_scaffold1185G00050 [Cucumis melo var. makuwa]	[more]
TYK28304.1	8.4e-43	98.90	hypothetical protein E5676_scaffold600G001270 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0298621 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0298621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V434	1.1e-43	100.00	BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7V8P5	1.1e-43	100.00	BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7TY62	4.0e-43	98.90	BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3DXN3	4.0e-43	98.90	BED-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7U370	4.0e-43	98.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc11g0298621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G33406.1	2.4e-24	56.04	hAT dimerisation domain-containing protein / transposase-related	[more]
AT3G22220.1	1.0e-14	45.12	hAT transposon superfamily	[more]
AT3G22220.2	1.0e-14	45.12	hAT transposon superfamily	[more]
AT4G15020.1	4.0e-11	39.02	hAT transposon superfamily	[more]
AT4G15020.2	4.0e-11	39.02	hAT transposon superfamily	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32166	OSJNBA0013A04.12 PROTEIN	coord: 4..91
None	No IPR available	PANTHER	PTHR32166:SF75	HAT TRANSPOSON SUPERFAMILY PROTEIN	coord: 4..91
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 23..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0298621.1	Cmc11g0298621.1	mRNA