Cmc11g0297761 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0297761
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr11: 17220542 .. 17221099 (-)
RNA-Seq ExpressionCmc11g0297761
SyntenyCmc11g0297761
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGAACAGTTGAAACTAATAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCGGTTAGAATATAACTCTTTACCTCCTTGTGATTTCTGTCTTGAGCGAAAAATGACAAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTCTGAACCAATGAATGTCAAGGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCGACGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGGTTCTTTTGAAAAGTTAAAAGAATATAAGGCTGAAGTTGAAAATGAAACAGGTAAAATAATAAAGACATTTCCATCAGATCGATGTGGAGAGTATATGGAATTGCGATTCGAAGACTATTTGATAGAGCATGGAACCCAATCACAACTCTCTACACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

mRNA sequence

ATGTTTAGAACAGTTGAAACTAATAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCGGTTAGAATATAACTCTTTACCTCCTTGTGATTTCTGTCTTGAGCGAAAAATGACAAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTCTGAACCAATGAATGTCAAGGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCGACGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGGTTCTTTTGAAAAGTTAAAAGAATATAAGGCTGAAGTTGAAAATGAAACAGGTAAAATAATAAAGACATTTCCATCAGATCGATGTGGAGAGTATATGGAATTGCGATTCGAAGACTATTTGATAGAGCATGGAACCCAATCACAACTCTCTACACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

Coding sequence (CDS)

ATGTTTAGAACAGTTGAAACTAATAATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCGGTTAGAATATAACTCTTTACCTCCTTGTGATTTCTGTCTTGAGCGAAAAATGACAAAAAGATCTTTTACTGGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTCTGAACCAATGAATGTCAAGGCTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCGACGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGGTTCTTTTGAAAAGTTAAAAGAATATAAGGCTGAAGTTGAAAATGAAACAGGTAAAATAATAAAGACATTTCCATCAGATCGATGTGGAGAGTATATGGAATTGCGATTCGAAGACTATTTGATAGAGCATGGAACCCAATCACAACTCTCTACACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

Protein sequence

MFRTVETNNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN
Homology
[Close]
BLAST of Cmc11g0297761 vs. NCBI nr
Match: KAA0062198.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 314.3 bits (804), Expect = 7.0e-82
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 32  RIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK 91
           +IGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK
Sbjct: 173 KIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK 232

Query: 92  ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY 151
           ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY
Sbjct: 233 ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY 292

Query: 152 MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 186
           MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN
Sbjct: 293 MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 326

[Close]
BLAST of Cmc11g0297761 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 149/185 (80.54%), Postives = 163/185 (88.11%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLERK 60
           MFRT+ET NK+QKVSSNA+LWHLRLGHINLNRI RLVKSG+L++LE NSLPPC+ CLE K
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSG 120
           MTKRSFTGK LRAK PL+LVHSDL  PMNVKARGGYEYFISFIDD+S YGHVYL+ +KS 
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGV 180
           SFEK KEYKAEVENE GK IKT  SDR GEYM+ +F+DYLIE G QSQLS PSTPQQNGV
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGV 604

Query: 181 SERRN 186
           SERRN
Sbjct: 605 SERRN 609

[Close]
BLAST of Cmc11g0297761 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 135/187 (72.19%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVSS--NAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLE 60
           MFRT  T NKRQ++SS  N +LWHLRLGHINL+RIGRLVK+GLL++LE +SLPPC+ CLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  RKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNK 120
            KMTKR FTGK  RAK PL+L+HSDL  PMNVKA GG+EYFISFIDDYS YG++YLI++K
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQN 180
           S + EK KEYK EVEN   K IK   SDR GEYM+LRF+DY+IEHG QSQLS P TPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 481 GVSERRN 487

[Close]
BLAST of Cmc11g0297761 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 2.3e-69
Identity = 133/187 (71.12%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVS--SNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLE 60
           MFRT  T NKRQ++S  +N +LWHLRLGHINL+RIGRLVK+GLL++L+  SLPPC+ CLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  RKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNK 120
            KMTKR FTGK  RAK PL+L+HSDL  PMNVKARGG+EYFISFIDDYS YG++YL+++K
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQN 180
           S + EK KEYK EVEN   K IK   SDR GEYM+LRF+DY+IEHG QSQLS P TPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 509 GVSERRN 515

[Close]
BLAST of Cmc11g0297761 vs. NCBI nr
Match: KAA0050872.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-69
Identity = 134/163 (82.21%), Postives = 144/163 (88.34%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLERK 60
           +FR  +T NKRQKVS NAFLWHLRLGHINLN IGRLVKSGLLS+LE NSLPPCD CLE K
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSG 120
           MT+RSFT K LRAKTPL+LVHSDL  PMNVKARGGY+YFISFID+YS YGHVYLIQNK  
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEH 164
           SFEK KEYKAEVENE+GK IKTF SDR GEYM+LRF+DYLIEH
Sbjct: 230 SFEKFKEYKAEVENESGKTIKTFRSDRGGEYMDLRFQDYLIEH 272

[Close]
BLAST of Cmc11g0297761 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-30
Identity = 69/180 (38.33%), Postives = 105/180 (58.33%), Query Frame = 0 

Query: 6   ETNNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRS 65
           E N  + ++S +  LWH R+GH++   +  L K  L+S  +  ++ PCD+CL  K  + S
Sbjct: 412 ELNAAQDEISVD--LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVS 471

Query: 66  FTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKL 125
           F     R    L LV+SD+  PM +++ GG +YF++FIDD S    VY+++ K   F+  
Sbjct: 472 FQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVF 531

Query: 126 KEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 185
           +++ A VE ETG+ +K   SD  GEY    FE+Y   HG + + + P TPQ NGV+ER N
Sbjct: 532 QKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMN 589

[Close]
BLAST of Cmc11g0297761 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-16
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 0 

Query: 21  WHLRLGHINLNRIGRLVKSGLLSRLE-YNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKL 80
           WH RLGH +L  +  ++ +  L  L   + L  C  C   K  K  F+   + +  PL+ 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 81  VHSDL-SEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGK 140
           ++SD+ S P  + +   Y Y++ F+D ++ Y  +Y ++ KS   +    +K+ VEN    
Sbjct: 506 IYSDVWSSP--ILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQT 565

Query: 141 IIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 186
            I T  SD  GE++ LR  DYL +HG     S P TP+ NG+SER++
Sbjct: 566 RIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKH 608

[Close]
BLAST of Cmc11g0297761 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-16
Identity = 59/181 (32.60%), Postives = 84/181 (46.41%), Query Frame = 0 

Query: 13  KVSSNAFLWHLRLGHIN------LNRIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSF 72
           K  +N  LWH R GHI+      + R        LL+ LE  S   C+ CL  K  +  F
Sbjct: 410 KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL-SCEICEPCLNGKQARLPF 469

Query: 73  TGKDLRAKT----PLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSGSF 132
             K L+ KT    PL +VHSD+  P+         YF+ F+D ++ Y   YLI+ KS  F
Sbjct: 470 --KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVF 529

Query: 133 EKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGVSE 184
              +++ A+ E      +     D   EY+      + ++ G    L+ P TPQ NGVSE
Sbjct: 530 SMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSE 587

[Close]
BLAST of Cmc11g0297761 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 0 

Query: 21  WHLRLGHINLNRIGRLVKSGLLSRLE-YNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKL 80
           WH RLGH   + +  ++ +  LS L   +    C  CL  K  K  F+   + +  PL+ 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 81  VHSDL-SEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGK 140
           ++SD+ S P  + +   Y Y++ F+D ++ Y  +Y ++ KS   E    +K  +EN    
Sbjct: 527 IYSDVWSSP--ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQT 586

Query: 141 IIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 186
            I TF SD  GE++ L   +Y  +HG     S P TP+ NG+SER++
Sbjct: 587 RIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKH 629

[Close]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match: A0A5A7V3M2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005960 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.4e-82
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 32  RIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK 91
           +IGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK
Sbjct: 173 KIGRLVKSGLLSRLEYNSLPPCDFCLERKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVK 232

Query: 92  ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY 151
           ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY
Sbjct: 233 ARGGYEYFISFIDDYSTYGHVYLIQNKSGSFEKLKEYKAEVENETGKIIKTFPSDRCGEY 292

Query: 152 MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 186
           MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN
Sbjct: 293 MELRFEDYLIEHGTQSQLSTPSTPQQNGVSERRN 326

[Close]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.9e-79
Identity = 149/185 (80.54%), Postives = 163/185 (88.11%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLERK 60
           MFRT+ET NK+QKVSSNA+LWHLRLGHINLNRI RLVKSG+L++LE NSLPPC+ CLE K
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNKSG 120
           MTKRSFTGK LRAK PL+LVHSDL  PMNVKARGGYEYFISFIDD+S YGHVYL+ +KS 
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQNGV 180
           SFEK KEYKAEVENE GK IKT  SDR GEYM+ +F+DYLIE G QSQLS PSTPQQNGV
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGV 604

Query: 181 SERRN 186
           SERRN
Sbjct: 605 SERRN 609

[Close]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 135/187 (72.19%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVSS--NAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLE 60
           MFRT  T NKRQ++SS  N +LWHLRLGHINL+RIGRLVK+GLL++LE +SLPPC+ CLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  RKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNK 120
            KMTKR FTGK  RAK PL+L+HSDL  PMNVKA GG+EYFISFIDDYS YG++YLI++K
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQN 180
           S + EK KEYK EVEN   K IK   SDR GEYM+LRF+DY+IEHG QSQLS P TPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 481 GVSERRN 487

[Close]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 133/187 (71.12%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVS--SNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLE 60
           MFRT  T NKRQ++S  +N +LWHLRLGHINL+RIGRLVK+GLL++L+  SLPPC+ CLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  RKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNK 120
            KMTKR FTGK  RAK PL+L+HSDL  PMNVKARGG+EYFISFIDDYS YG++YL+++K
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQN 180
           S + EK KEYK EVEN   K IK   SDR GEYM+LRF+DY+IEHG QSQLS P TPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 509 GVSERRN 515

[Close]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 132/187 (70.59%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MFRTVETNNKRQKVS--SNAFLWHLRLGHINLNRIGRLVKSGLLSRLEYNSLPPCDFCLE 60
           MFRT  T NKRQ++S  +N +LWHLRL HINL+RIGRLVK+GLL++L+ +SLPPC+ CLE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  RKMTKRSFTGKDLRAKTPLKLVHSDLSEPMNVKARGGYEYFISFIDDYSTYGHVYLIQNK 120
            KMTKR FTGKD RAK PL+L+HSDL  PMNVKARGG+EYFISFIDDYS YG++YL+++K
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 418

Query: 121 SGSFEKLKEYKAEVENETGKIIKTFPSDRCGEYMELRFEDYLIEHGTQSQLSTPSTPQQN 180
             + EK KEYK EVEN   K IK   SDR GEYM+LRF+DY+IEHG QSQLS P TPQQN
Sbjct: 419 YEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 478

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 479 GVSERRN 485

The following BLAST results are available for this feature:
BLAST of Cmc11g0297761 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062198.17.0e-8299.35gag/pol protein [Cucumis melo var. makuwa][more]
ADJ18449.11.2e-7880.54gag/pol protein, partial [Bryonia dioica][more]
KAA0060534.14.7e-7072.19gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ... [more]
KAA0025945.12.3e-6971.12gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
KAA0050872.14.0e-6982.21gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc11g0297761 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109782.9e-3038.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT941.8e-1632.93Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041465.3e-1632.60Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW22.0e-1531.74Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V3M23.4e-8299.35Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00596... [more]
E2GK515.9e-7980.54Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1[more]
A0A5D3BNE12.3e-7072.19Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041... [more]
A0A5A7TZD01.1e-6971.12Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5A7VJG31.9e-6970.59Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011... [more]
BLAST of Cmc11g0297761 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 68..185
e-value: 2.5E-19
score: 71.5
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 12..61
e-value: 3.5E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..185
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 72..185
score: 17.218021
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 69..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0297761.1Cmc11g0297761.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding