Cmc11g0297681 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0297681
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr11: 17099667 .. 17100479 (+)
RNA-Seq ExpressionCmc11g0297681
SyntenyCmc11g0297681
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCCAATAGAGTTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGATCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTTGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCATTCCAGATACGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTATGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGAAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCAAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAAGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTTAA

mRNA sequence

ATGGTCCCAATAGAGTTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGATCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTTGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCATTCCAGATACGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTATGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGAAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCAAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAAGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTTAA

Coding sequence (CDS)

ATGGTCCCAATAGAGTTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGATCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAGGTAACCGTTAAGAACAAATATCCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTTGGGATATCATCAGTTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCATTCCAGATACGGACACTATGAGTTCATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTATGATTGTGTTTATTGATGATATCTTGATATACTCCAAGACGAAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTAGGGATAATAAGTTGTATGCAAAGTTCTCAAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTCCTAGGCCATGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAAGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTTAA

Protein sequence

MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTKKGAPFVWSKACEDSFQNL
Homology
BLAST of Cmc11g0297681 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 532.3 bits (1370), Expect = 2.4e-147
Identity = 260/270 (96.30%), Postives = 266/270 (98.52%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQ+LLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 149 MAPAELKELKVQLQKLLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 208

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 209 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 268

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 269 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 328

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 329 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 388

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 389 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 418

BLAST of Cmc11g0297681 vs. NCBI nr
Match: KAA0040871.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 531.9 bits (1369), Expect = 3.1e-147
Identity = 260/270 (96.30%), Postives = 265/270 (98.15%), Query Frame = 0

Query: 1    MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK
Sbjct: 789  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 848

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
            YPLP+IDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 849  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 908

Query: 121  NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 909  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 968

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 969  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1028

Query: 241  SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
            SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 1029 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 1058

BLAST of Cmc11g0297681 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 531.9 bits (1369), Expect = 3.1e-147
Identity = 260/270 (96.30%), Postives = 265/270 (98.15%), Query Frame = 0

Query: 1    MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
            SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 1332

BLAST of Cmc11g0297681 vs. NCBI nr
Match: KAA0043555.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 531.6 bits (1368), Expect = 4.0e-147
Identity = 260/270 (96.30%), Postives = 264/270 (97.78%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIY KT+AEHEEHLRMVLQTLRDNKLYA FS
Sbjct: 476 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYCKTEAEHEEHLRMVLQTLRDNKLYANFS 535

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 536 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 595

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 596 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 625

BLAST of Cmc11g0297681 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 530.4 bits (1365), Expect = 9.0e-147
Identity = 260/270 (96.30%), Postives = 264/270 (97.78%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKD DVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 820 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 849

BLAST of Cmc11g0297681 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 9.0e-57
Identity = 101/251 (40.24%), Postives = 161/251 (64.14%), Query Frame = 0

Query: 8   ELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNKYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ ++YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSKC 187
           PA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR 247
           EF  K+ +FLGH+V+  G+  +P K++A+  +  P+   E+R+FLGL GYYR+F+ N++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IATPLTQLTKK 254
           IA P+T   KK
Sbjct: 461 IAKPMTSCLKK 471

BLAST of Cmc11g0297681 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-56
Identity = 103/252 (40.87%), Postives = 168/252 (66.67%), Query Frame = 0

Query: 7   KELKVQLQELLDKGFIRSSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNKY 66
           +E++ Q+Q++L++G IR+S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +++
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSK 186
           APA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFS 246
           CEF  ++ +FLGHV++  G+  +P KIEA+  +  P+   E+++FLGL GYYR+F+ NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIATPLTQLTKK 254
            IA P+T+  KK
Sbjct: 461 DIAKPMTKCLKK 472

BLAST of Cmc11g0297681 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.5e-53
Identity = 97/268 (36.19%), Postives = 164/268 (61.19%), Query Frame = 0

Query: 3   PIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYP 62
           P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YP
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYP 481

Query: 63  LPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTNA 122
           LP I+ L  ++QG+T+F+K+DL+  YH +R++ GD  K AF    G +E++VM +G++ A
Sbjct: 482 LPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTA 541

Query: 123 PAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSKC 182
           PA F   +N +  E  ++ ++ ++DDILI+SK+++EH +H++ VLQ L++  L    +KC
Sbjct: 542 PAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKC 601

Query: 183 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR 242
           EF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Sbjct: 602 EFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQ 661

Query: 243 IATPLTQLTKKGAPFVWSKACEDSFQNL 271
           +  PL  L KK   + W+     + +N+
Sbjct: 662 LTHPLNNLLKKDVRWKWTPTQTQAIENI 689

BLAST of Cmc11g0297681 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.5e-53
Identity = 97/268 (36.19%), Postives = 164/268 (61.19%), Query Frame = 0

Query: 3   PIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYP 62
           P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YP
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYP 481

Query: 63  LPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTNA 122
           LP I+ L  ++QG+T+F+K+DL+  YH +R++ GD  K AF    G +E++VM +G++ A
Sbjct: 482 LPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTA 541

Query: 123 PAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSKC 182
           PA F   +N +  E  ++ ++ ++DDILI+SK+++EH +H++ VLQ L++  L    +KC
Sbjct: 542 PAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKC 601

Query: 183 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR 242
           EF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Sbjct: 602 EFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQ 661

Query: 243 IATPLTQLTKKGAPFVWSKACEDSFQNL 271
           +  PL  L KK   + W+     + +N+
Sbjct: 662 LTHPLNNLLKKDVRWKWTPTQTQAIENI 689

BLAST of Cmc11g0297681 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.5e-53
Identity = 97/268 (36.19%), Postives = 164/268 (61.19%), Query Frame = 0

Query: 3   PIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNKYP 62
           P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YP
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYP 481

Query: 63  LPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLTNA 122
           LP I+ L  ++QG+T+F+K+DL+  YH +R++ GD  K AF    G +E++VM +G++ A
Sbjct: 482 LPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTA 541

Query: 123 PAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFSKC 182
           PA F   +N +  E  ++ ++ ++DDILI+SK+++EH +H++ VLQ L++  L    +KC
Sbjct: 542 PAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKC 601

Query: 183 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSR 242
           EF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R+F+   S+
Sbjct: 602 EFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQ 661

Query: 243 IATPLTQLTKKGAPFVWSKACEDSFQNL 271
           +  PL  L KK   + W+     + +N+
Sbjct: 662 LTHPLNNLLKKDVRWKWTPTQTQAIENI 689

BLAST of Cmc11g0297681 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.1e-147
Identity = 260/270 (96.30%), Postives = 266/270 (98.52%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQ+LLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 149 MAPAELKELKVQLQKLLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 208

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 209 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 268

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 269 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 328

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 329 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 388

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 389 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 418

BLAST of Cmc11g0297681 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 260/270 (96.30%), Postives = 265/270 (98.15%), Query Frame = 0

Query: 1    MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK
Sbjct: 789  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 848

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
            YPLP+IDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 849  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 908

Query: 121  NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 909  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 968

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 969  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1028

Query: 241  SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
            SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 1029 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 1058

BLAST of Cmc11g0297681 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 260/270 (96.30%), Postives = 265/270 (98.15%), Query Frame = 0

Query: 1    MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
            M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLR+VLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
            SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 1332

BLAST of Cmc11g0297681 vs. ExPASy TrEMBL
Match: A0A5A7TQ69 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00590 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.0e-147
Identity = 260/270 (96.30%), Postives = 264/270 (97.78%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIY KT+AEHEEHLRMVLQTLRDNKLYA FS
Sbjct: 476 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYCKTEAEHEEHLRMVLQTLRDNKLYANFS 535

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 536 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 595

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 596 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 625

BLAST of Cmc11g0297681 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.4e-147
Identity = 260/270 (96.30%), Postives = 264/270 (97.78%), Query Frame = 0

Query: 1   MVPIELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 60
           M P ELKELKVQLQELLDKGFIR SVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRLGYHQLRIKDGDVPKTAFHSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLR GYHQLRIKD DVPKTAF SRYGHYEFIVMSFGLT
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NAPAVFMDLMNRVFREFLDTFMIVFIDDILIYSKTKAEHEEHLRMVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTF+IVFIDDILIYSKT+AEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241 SRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
           SRIATPLTQLT+KGAPFVWSKACEDSFQNL
Sbjct: 820 SRIATPLTQLTRKGAPFVWSKACEDSFQNL 849

BLAST of Cmc11g0297681 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-24
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 162 HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPST 221
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTKKGAPFVWSKACEDSFQNL 271
            +E+R FLGL GYYRRFV+N+ +I  PLT+L KK +   W++    +F+ L
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKAL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0026271.12.4e-14796.30pol protein [Cucumis melo var. makuwa][more]
KAA0040871.13.1e-14796.30DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0047433.13.1e-14796.30ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0043555.14.0e-14796.30pol protein [Cucumis melo var. makuwa][more]
KAA0048687.19.0e-14796.30pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208259.0e-5740.24Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043232.6e-5640.87Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P0CT413.5e-5336.19Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT343.5e-5336.19Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT353.5e-5336.19Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7SPZ21.1e-14796.30Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE... [more]
A0A5A7TGS71.5e-14796.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34... [more]
A0A5A7TV571.5e-14796.30Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TQ692.0e-14796.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33... [more]
A0A5A7U3304.4e-14796.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
Match NameE-valueIdentityDescription
ATMG00860.17.9e-2446.85DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 206..270
e-value: 3.4E-24
score: 86.7
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 61..196
e-value: 2.8E-85
score: 287.0
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 36..195
e-value: 7.6E-29
score: 100.8
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 17..196
score: 10.515537
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 3..121
e-value: 2.8E-85
score: 287.0
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 5..269
NoneNo IPR availablePANTHERPTHR24559:SF363SUBFAMILY NOT NAMEDcoord: 5..269
NoneNo IPR availableCDDcd01647RT_LTRcoord: 20..196
e-value: 3.15296E-95
score: 275.628
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 4..270

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0297681.1Cmc11g0297681.1mRNA