Cmc11g0295121 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0295121
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
LocationCMiso1.1chr11: 12246073 .. 12246708 (-)
RNA-Seq ExpressionCmc11g0295121
SyntenyCmc11g0295121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

mRNA sequence

ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

Coding sequence (CDS)

ATGCCCTTTGAACTATGTAATGCTCCTACAACATTTCAAAGATGCATGTTAAGCATATTCACTAATTTCATAGGAAAATGCATAGAAGTGTTCATGGTTGATTTTACAGTTTATGGGAATGATTTTTATTCTTGCTTGAATAATTTAGAGTTGATTTTAAAGAGATGTATTGATACTAACTTAATGCTTAACTTTGAAAAGTGTCATTTCATGGCCTCTTACGGTATAGTACTAGGACACTTAGTATCATCTAAGGGAATAGAAGTTGACAAAGCTAAAATTAATGTAATTCAAAACTTATCCTACCCCACTTGTTTAAAAGATGTTAGATCATTTTTTGTTAGTGCCGGATTTTATAGAAGGTTCATAAAAGACTTTTCTAAGATAGTTTTGCCTCTGACAAATTTACTTAAAAAAGATGTCCCTTTTGTAATTGATGATAAATGCATGCATGTTTTTGATACTTTGAAAGATAAATTGACTTCTTCTCCTATCTTGCAAACACTTAATTGGAACTCACCATTTGAAATAATATGTGATGCAAATGATTATGTATTAGGTGTAGTACTAGGACAAAGAGTAGATAACAAATTGCATGCTATATATTTCACATCTCGAACTCTGAATTCTGCTTAA

Protein sequence

MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTNLMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYRRFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICDANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA
Homology
BLAST of Cmc11g0295121 vs. NCBI nr
Match: KYP78666.1 (Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan])

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-77
Identity = 136/211 (64.45%), Postives = 172/211 (81.52%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFT+YG+ F +CL+NL+ +L RCI+T+
Sbjct: 1   MPFGLCNAPDTFQRCMLSIFSDFLENCIEVFMDDFTIYGSSFDTCLDNLDRVLNRCIETD 60

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SS+GIEVD AKI+VI  L YP+C+++VRSF V AGFYR
Sbjct: 61  LVLNFEKCHFMVEQGIVLGHIISSRGIEVDPAKISVISQLPYPSCVREVRSFLVHAGFYR 120

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+FSK  LPL+NLL+K+V FV DD+C  VFD LK+ LT++PI+Q L+W  PFE++CD
Sbjct: 121 RFIKEFSKKALPLSNLLQKEVDFVFDDRCKQVFDCLKEALTTTPIIQALDWTVPFELMCD 180

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            ++Y LG VL QRVD     IY+ SRTLN+A
Sbjct: 181 VSNYALGAVLAQRVDKLPRVIYYASRTLNAA 211

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_021603241.1 (uncharacterized protein LOC110608326 [Manihot esculenta])

HSP 1 Score: 296.2 bits (757), Expect = 2.2e-76
Identity = 135/211 (63.98%), Postives = 170/211 (80.57%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+ F+ K IEVFM DFTVYGN F  CL NL  ILKRC+++N
Sbjct: 361 MPFGLCNAPATFQRCMVSIFSEFVEKIIEVFMDDFTVYGNSFDECLINLTHILKRCLESN 420

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LN+EKCHFM   G++LGH VS++GIEVDKAK++VI++L YPTC++D+RSF   AGFYR
Sbjct: 421 LVLNYEKCHFMVDQGLILGHTVSNRGIEVDKAKVDVIKDLPYPTCIRDIRSFLGHAGFYR 480

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFS+I  PL  LL+KDVPF  D++C   F+TLK+KL ++PI+Q  NW+ PFEI+CD
Sbjct: 481 RFIKDFSRIAQPLCKLLQKDVPFNFDNECREAFNTLKEKLVAAPIIQAPNWHYPFEIMCD 540

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VLGQR+D K H I + SRTL+ A
Sbjct: 541 ASNYALGAVLGQRIDKKPHVICYASRTLDKA 571

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_024932191.1 (uncharacterized protein LOC112492555, partial [Ziziphus jujuba])

HSP 1 Score: 295.0 bits (754), Expect = 5.0e-76
Identity = 139/211 (65.88%), Postives = 164/211 (77.73%), Query Frame = 0

Query: 1    MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
            MPF LCNAP TFQRCM+SIF++ +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 995  MPFGLCNAPATFQRCMMSIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETN 1054

Query: 61   LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
            L+LN+EKCHFM   GIVLGH VS +GIEVDKAKI VI+ L  PT +K +RSF   AGFYR
Sbjct: 1055 LVLNWEKCHFMVQEGIVLGHKVSKRGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHAGFYR 1114

Query: 121  RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
            RFIKDFSKI  PL NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 1115 RFIKDFSKITKPLCNLLNKDVPFVFDDECMHAFNLLKEKLICAPIMCTPNWNLPFEIMCD 1174

Query: 181  ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            A+DY +G VLGQR D KLH IY+ SRTLN A
Sbjct: 1175 ASDYAIGAVLGQRKDKKLHVIYYASRTLNDA 1205

BLAST of Cmc11g0295121 vs. NCBI nr
Match: KYP30916.1 (Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 134/211 (63.51%), Postives = 170/211 (80.57%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFTVYG+ F +CL++L+ +L RCI+TN
Sbjct: 18  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETN 77

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 78  LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 137

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 138 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 197

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 198 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 228

BLAST of Cmc11g0295121 vs. NCBI nr
Match: XP_023758997.1 (uncharacterized protein LOC111907462 [Lactuca sativa])

HSP 1 Score: 291.6 bits (745), Expect = 5.5e-75
Identity = 135/211 (63.98%), Postives = 166/211 (78.67%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+ ++   IEVFM DFTVYGN F  CL NL  ILKRCI+TN
Sbjct: 614 MPFGLCNAPATFQRCMVSIFSEYVENIIEVFMDDFTVYGNSFQECLTNLTKILKRCIETN 673

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM S G++LGH+VS KGIEVDKAKI+VIQ+L YPTC+++VRSF   AGFYR
Sbjct: 674 LVLNFEKCHFMVSQGLILGHIVSKKGIEVDKAKIDVIQSLPYPTCVREVRSFLGHAGFYR 733

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFSKI  P+  LL+K+V F  ++ C   FD LK+ LTS+PI+Q  NW+ PFEI+CD
Sbjct: 734 RFIKDFSKITRPMCQLLQKEVDFEFNEACKEAFDKLKELLTSAPIMQAPNWDLPFEIMCD 793

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y +G VLGQ+     H IY+ SRTL++A
Sbjct: 794 ASNYAIGAVLGQKNGRASHVIYYASRTLDNA 824

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 75/220 (34.09%), Postives = 117/220 (53.18%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L NAP  FQR +  I    IGK   V++ D  V+  D+ +   NL L+L      N
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L +N EK HF+ +    LG++V++ GI+ D  K+  I  +  PT +K+++ F     +YR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIKDFSKIVLPLTNLLK-----------KDVPFVIDDKCMHVFDTLKDKLTSSPILQTL 180
           +FI+D++K+  PLTNL +             VP  +D+  +  F+ LK  L SS IL   
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 NWNSPFEIICDANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
            +  PF +  DA+++ +G VL Q    +   I + SR+LN
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLN 469

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 74/210 (35.24%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF L NAP TFQRCM +I    + K   V++ D  ++       LN+++L+  +  D N
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L  +KC F+      LGH+V+  GI+ +  K+  I +   PT  K++R+F    G+YR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDD-KCMHVFDTLKDKLTSSPILQTLNWNSPFEIIC 180
           +FI +++ I  P+T+ LKK         + +  F+ LK  +   PILQ  ++   F +  
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
           DA++  LG VL Q      H I F SRTLN
Sbjct: 513 DASNLALGAVLSQNG----HPISFISRTLN 538

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF L NAP TFQRCM  I    + K   V++ D  V+       L +L L+ ++    N
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L  +KC F+      LGH+++  GI+ +  KI  IQ    PT  K++++F    G+YR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIKDFSKIVLPLTNLLKKDVPF-VIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIIC 180
           +FI +F+ I  P+T  LKK++     + +    F  LK  ++  PIL+  ++   F +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DANDYVLGVVLGQRVDNKLHAIYFTSRTLN 210
           DA+D  LG VL Q      H + + SRTLN
Sbjct: 514 DASDVALGAVLSQ----DGHPLSYISRTLN 539

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 72/206 (34.95%), Postives = 99/206 (48.06%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L  AP +FQR M   F+        ++M D  V G      L NL  +  +C + N
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L L+ EKC F       LGH  + KGI  D  K +VIQN   P      R F     +YR
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+F+     +T L KK+VPF   D+C   F  LK +L +  +LQ  +++  F I  D
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSR 207
           A+    G VL Q  +     + + SR
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASR 647

BLAST of Cmc11g0295121 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-22
Identity = 65/204 (31.86%), Postives = 104/204 (50.98%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           +PF L NA + FQR +  +    IGK   V++ D  ++  +    + +++ +LK  ID N
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           + ++ EK  F       LG +VS  G + D  K+  IQ    P C+  VRSF   A +YR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIKDFSKIVLPLTNLLK-----------KDVPFVIDDKCMHVFDTLKDKLTSSP-ILQT 180
            FIKDF+ I  P+T++LK           K +P   ++   + F  L++ L S   IL+ 
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 LNWNSPFEIICDANDYVLGVVLGQ 193
            ++  PF++  DA+   +G VL Q
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQ 512

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151UH77 (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821 GN=KK1_048718 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.7e-77
Identity = 136/211 (64.45%), Postives = 172/211 (81.52%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFT+YG+ F +CL+NL+ +L RCI+T+
Sbjct: 1   MPFGLCNAPDTFQRCMLSIFSDFLENCIEVFMDDFTIYGSSFDTCLDNLDRVLNRCIETD 60

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SS+GIEVD AKI+VI  L YP+C+++VRSF V AGFYR
Sbjct: 61  LVLNFEKCHFMVEQGIVLGHIISSRGIEVDPAKISVISQLPYPSCVREVRSFLVHAGFYR 120

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIK+FSK  LPL+NLL+K+V FV DD+C  VFD LK+ LT++PI+Q L+W  PFE++CD
Sbjct: 121 RFIKEFSKKALPLSNLLQKEVDFVFDDRCKQVFDCLKEALTTTPIIQALDWTVPFELMCD 180

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            ++Y LG VL QRVD     IY+ SRTLN+A
Sbjct: 181 VSNYALGAVLAQRVDKLPRVIYYASRTLNAA 211

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A6P6GDJ4 (Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.4e-76
Identity = 139/211 (65.88%), Postives = 164/211 (77.73%), Query Frame = 0

Query: 1    MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
            MPF LCNAP TFQRCM+SIF++ +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 995  MPFGLCNAPATFQRCMMSIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETN 1054

Query: 61   LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
            L+LN+EKCHFM   GIVLGH VS +GIEVDKAKI VI+ L  PT +K +RSF   AGFYR
Sbjct: 1055 LVLNWEKCHFMVQEGIVLGHKVSKRGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHAGFYR 1114

Query: 121  RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
            RFIKDFSKI  PL NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 1115 RFIKDFSKITKPLCNLLNKDVPFVFDDECMHAFNLLKEKLICAPIMCTPNWNLPFEIMCD 1174

Query: 181  ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
            A+DY +G VLGQR D KLH IY+ SRTLN A
Sbjct: 1175 ASDYAIGAVLGQRKDKKLHVIYYASRTLNDA 1205

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151QKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049680 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 7.0e-76
Identity = 134/211 (63.51%), Postives = 170/211 (80.57%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIEVFM DFTVYG+ F +CL++L+ +L RCI+TN
Sbjct: 18  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETN 77

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 78  LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 137

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 138 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 197

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 198 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 228

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A151QZW2 (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043040 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-75
Identity = 133/211 (63.03%), Postives = 169/211 (80.09%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCMLSIF++F+  CIE+FM DFTVYG+ F +CL++L+  L RCI+TN
Sbjct: 480 MPFGLCNAPGTFQRCMLSIFSDFLENCIELFMDDFTVYGSSFDACLDSLDRFLNRCIETN 539

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LNFEKCHFM   GIVLGH++SSKGIEVD AK++VI  L YP+C+++VRSF   AGFYR
Sbjct: 540 LVLNFEKCHFMVEQGIVLGHIISSKGIEVDPAKVSVISQLPYPSCVREVRSFLGHAGFYR 599

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RF+K+FSK  LPL+NLL+KDV FV DD+C   FD LK+ LT++PI+Q  +W  PFE++CD
Sbjct: 600 RFVKEFSKKALPLSNLLQKDVDFVFDDRCKQAFDCLKEALTTTPIIQAPDWTVPFELMCD 659

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A++Y LG VL QRVD     IY+ SRTL++A
Sbjct: 660 ASNYALGAVLAQRVDKLPRVIYYASRTLDAA 690

BLAST of Cmc11g0295121 vs. ExPASy TrEMBL
Match: A0A6P6GGJ1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=326968 GN=LOC112492876 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 137/211 (64.93%), Postives = 161/211 (76.30%), Query Frame = 0

Query: 1   MPFELCNAPTTFQRCMLSIFTNFIGKCIEVFMVDFTVYGNDFYSCLNNLELILKRCIDTN 60
           MPF LCNAP TFQRCM+SIF+N +   IE+FM DF+V+G+ F SCL NL  +L RC +TN
Sbjct: 624 MPFGLCNAPATFQRCMMSIFSNMVEDIIEIFMDDFSVFGDSFTSCLQNLSRLLLRCKETN 683

Query: 61  LMLNFEKCHFMASYGIVLGHLVSSKGIEVDKAKINVIQNLSYPTCLKDVRSFFVSAGFYR 120
           L+LN+EKCHFM   GIVLGH VS  GIEVDKAKI VI+ L  PT +K +RSF    GFYR
Sbjct: 684 LVLNWEKCHFMVQEGIVLGHKVSKSGIEVDKAKIEVIEKLPPPTSIKGIRSFLGHVGFYR 743

Query: 121 RFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSSPILQTLNWNSPFEIICD 180
           RFIKDFSKI   L NLL KDVPFV DD+CMH F+ LK+KL  +PI+ T NWN PFEI+CD
Sbjct: 744 RFIKDFSKITKLLCNLLNKDVPFVFDDECMHAFNRLKEKLICAPIMCTPNWNLPFEIMCD 803

Query: 181 ANDYVLGVVLGQRVDNKLHAIYFTSRTLNSA 212
           A+D+ +G VLGQR D KLH IY+ SRTLN A
Sbjct: 804 ASDFAIGAVLGQRKDKKLHVIYYASRTLNDA 834

BLAST of Cmc11g0295121 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-12
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 0

Query: 46  LNNLELILKRCIDTNLMLNFEKCHFMASYGIVLG--HLVSSKGIEVDKAKINVIQNLSYP 105
           +N+L ++L+         N +KC F       LG  H++S +G+  D AK+  +     P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 106 TCLKDVRSFFVSAGFYRRFIKDFSKIVLPLTNLLKKDVPFVIDDKCMHVFDTLKDKLTSS 165
               ++R F    G+YRRF+K++ KIV PLT LLKK+      +     F  LK  +T+ 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 120

Query: 166 PILQTLNWNSPF 176
           P+L   +   PF
Sbjct: 121 PVLALPDLKLPF 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KYP78666.13.5e-7764.45Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan][more]
XP_021603241.12.2e-7663.98uncharacterized protein LOC110608326 [Manihot esculenta][more]
XP_024932191.15.0e-7665.88uncharacterized protein LOC112492555, partial [Ziziphus jujuba][more]
KYP30916.11.4e-7563.51Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan][more]
XP_023758997.15.5e-7563.98uncharacterized protein LOC111907462 [Lactuca sativa][more]
Match NameE-valueIdentityDescription
Q8I7P91.0e-3134.09Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P208253.3e-3035.24Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043231.1e-2834.76Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P103941.2e-2434.95Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
P104012.5e-2231.86Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Match NameE-valueIdentityDescription
A0A151UH771.7e-7764.45Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821... [more]
A0A6P6GDJ42.4e-7665.88Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1[more]
A0A151QKV47.0e-7663.51Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus ca... [more]
A0A151QZW23.5e-7563.03Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_... [more]
A0A6P6GGJ11.7e-7464.93LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=... [more]
Match NameE-valueIdentityDescription
ATMG00860.13.2e-1231.82DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 91..183
e-value: 1.6E-23
score: 84.5
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..89
e-value: 2.0E-24
score: 88.3
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 146..211
e-value: 9.2E-15
score: 54.5
NoneNo IPR availablePANTHERPTHR34072ENZYMATIC POLYPROTEIN-RELATEDcoord: 1..206
NoneNo IPR availablePANTHERPTHR34072:SF9ENZYMATIC POLYPROTEIN-RELATEDcoord: 1..206
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..82
e-value: 2.73201E-26
score: 97.6661
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0295121.1Cmc11g0295121.1mRNA