Cmc11g0294821 (gene) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGGTTGCAAGGCAGTTTCAACACCCATAGTATCTCATTTTAGACTTTCTTCGTCTCGATGTCCTGTTACTGAACAAGAAAGGTTAAAGATTTCTAATATTCCATATTGTAATGTTATTGGAAGTATTATGTATCTGATGATTTGTACTAGGCTAGACTTGGGTTATGCTATAAGTATGATTAGTAGGTTTATGTCAAATTTTGGGAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGTTATTTGAAAGGTAGTGCAAGTGTATCATTGTGTTATAGCAAGGATTGTGATAAATCAACATTGTTGGAAGGTTTCACAAATGTAGATGATGCTGCAAATCTTGATAAAAGAAGGTCACTAGTAGCTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTATCCTACAGCCCGTTGTTCTTTGTCAACTACTGAGTCAAAATATATTTCTCTTGGTGAAGAAGTTAAGGAAGCAGTGTGGCTGGAAAGAATTGTTGGTGAGTTTTTATCGCAGGAGTTTATTCTTATCATCCATTGTGATAGTTAGAGTGTTATTCATCTTACGAAGAATCTATCTCATCATGAATGATCTAAGCATATCAATGTCAAATTTCATTACATAA ATGTCTGGTTGCAAGGCAGTTTCAACACCCATAGTATCTCATTTTAGACTTTCTTCGTCTCGATGTCCTGTTACTGAACAAGAAAGGTTAAAGATTTCTAATATTCCATATTGTAATGTTATTGGAAGTATTATGTATCTGATGATTTGTACTAGGCTAGACTTGGGTTATGCTATAAGTATGATTAGTAGGTTTATGTCAAATTTTGGGAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGTTATTTGAAAGGTAGTGCAAGTGTATCATTGTGTTATAGCAAGGATTGTGATAAATCAACATTGTTGGAAGGTTTCACAAATGTAGATGATGCTGCAAATCTTGATAAAAGAAGGTCACTAGTAGCTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTATCCTACAGCCCGTTGTTCTTTGTCAACTACTGAGTCAAAATATATTTCTCTTGGTGAAGAAGTTAAGGAAGCAGTGTGGCTGGAAAGAATTGTTGGTGAGTTTTTATCGCAGGAGTTTATTCTTATCATCCATTGTGATAGTTAGAGTGTTATTCATCTTACGAAGAATCTATCTCATCATGAATGATCTAAGCATATCAATGTCAAATTTCATTACATAA ATGTCTGGTTGCAAGGCAGTTTCAACACCCATAGTATCTCATTTTAGACTTTCTTCGTCTCGATGTCCTGTTACTGAACAAGAAAGGTTAAAGATTTCTAATATTCCATATTGTAATGTTATTGGAAGTATTATGTATCTGATGATTTGTACTAGGCTAGACTTGGGTTATGCTATAAGTATGATTAGTAGGTTTATGTCAAATTTTGGGAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGTTATTTGAAAGGTAGTGCAAGTGTATCATTGTGTTATAGCAAGGATTGTGATAAATCAACATTGTTGGAAGGTTTCACAAATGTAGATGATGCTGCAAATCTTGATAAAAGAAGGTCACTAGTAGCTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGGAAAGTTATCCTACAGCCCGTTGTTCTTTGTCAACTACTGAGTCAAAATATATTTCTCTTGGTGAAGAAGTTAAGGAAGCAGTGTGGCTGGAAAGAATTGTTGGTGAGTTTTTATCGCAGGAGTTTATTCTTATCATCCATTGTGATAGTTAGAGTGTTATTCATCTTACGAAGAATCTATCTCATCATGAATGATCTAAGCATATCAATGTCAAATTTCATTACATAA MSGCKAVSTPIVSHFRLSSSRCPVTEQERLKISNIPYCNVIGSIMYLMICTRLDLGYAISMISRFMSNFGKEHWKAVKWVLRYLKGSASVSLCYSKDCDKSTLLEGFTNVDDAANLDKRRSLVAHIFRLYGNVVSWKVILQPVVLCQLLSQNIFLLVKKLRKQCGWKELLVSFYRRSLFLSSIVIVRVLFILRRIYLIMNDLSISMSNFIT Homology
BLAST of Cmc11g0294821 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 253.4 bits (646), Expect = 1.7e-63 Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 0
BLAST of Cmc11g0294821 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 251.1 bits (640), Expect = 8.3e-63 Identity = 125/171 (73.10%), Postives = 146/171 (85.38%), Query Frame = 0
BLAST of Cmc11g0294821 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 250.8 bits (639), Expect = 1.1e-62 Identity = 125/171 (73.10%), Postives = 146/171 (85.38%), Query Frame = 0
BLAST of Cmc11g0294821 vs. NCBI nr
Match: KAA0067463.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 207.2 bits (526), Expect = 1.4e-49 Identity = 115/157 (73.25%), Postives = 120/157 (76.43%), Query Frame = 0
BLAST of Cmc11g0294821 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 189.5 bits (480), Expect = 2.9e-44 Identity = 97/141 (68.79%), Postives = 107/141 (75.89%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 3.5e-32 Identity = 60/144 (41.67%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15 Identity = 40/106 (37.74%), Postives = 70/106 (66.04%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14 Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 8.7e-07 Identity = 41/139 (29.50%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.3e-06 Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 8.0e-64 Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 4.0e-63 Identity = 125/171 (73.10%), Postives = 146/171 (85.38%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 5.2e-63 Identity = 125/171 (73.10%), Postives = 146/171 (85.38%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy TrEMBL
Match: A0A5A7VH96 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001340 PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 6.6e-50 Identity = 115/157 (73.25%), Postives = 120/157 (76.43%), Query Frame = 0
BLAST of Cmc11g0294821 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44 Identity = 97/141 (68.79%), Postives = 107/141 (75.89%), Query Frame = 0
BLAST of Cmc11g0294821 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 57.4 bits (137), Expect = 1.6e-08 Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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