Cmc11g0293201 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0293201
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerase III subunit RPC5 isoform X1
LocationCMiso1.1chr11: 9382348 .. 9388236 (-)
RNA-Seq ExpressionCmc11g0293201
SyntenyCmc11g0293201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTTTTACCTTTTCCCTTTCCCTCCATACAACCCCAATTTCCCTCTTGCTGATCTTCTCACAACCCACACGCTACCACTACCCTCTTCTCACAACTCACCCATCCGAATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGAGTAACTATCGAACGTTGTCGGTTTTGATGTGTAAGGCATAAAAATATCTTTATCATCTTTATCATCTATTTCCAGTTATATGTATTGCAATATCCTCTCAGACCACGTTGGAGGCCCTTTGAATTTGAGGGGCGATGTGATGAGGTGAGCATTTTTTTTAATTCCTTATCATTCTGAAAGAATTTGAACTGTACTCTTTTAGTTTCAACAGGTAAGAGTTAAACCTAGCACTGTAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAACCTGATTGCACATTCCATATGAAGAAGCATGTATCTTCTTTTACTTTTCTCTTGATTTAAATTGTTGTGAATTCATCCATATTTGGGGATTTACTAGGATTTCAAGTTTGGTTCATTTGTATGATTGAACTTGCAGATCGTGTCAGGGTTAACTTGAAAAAACATGCTACATTCCTTAAGATTTTTCCAAAAGATAAAGAGTGATAGTTTTTTGAAACCGAATTCAGTAGCAATTTCTAGTTGAATCTATGTTCTTTTCTTTCTTTTTTTCACCGTCGTATTATTCTTGAGTTTGTTCTCACTTTATCAACTTAACCATGTTTCACCTAGTAATTGGTCATGGGCTATTTCTTTCGTGTACTATATTCAACAGAAGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTGTTTTTGGTTCAGACTTTGACATCTTCATGACAACCGCCTCTAGCTACGTCATATGCTATTGGGCTGCTTATGCAACATAAGGTTGCTTCTCTATCTCTTATCTTTTGAACTGCACACCTTTTCTTTTCTTCTTGTTCTTTCTATGATCAACATTGAATCAACCGTAGTTGATGGACCCTTTGTTTCTTCATTGTTCTGGCACTTGGTCATATTTAATTTTGAATCAGCATGGCCTTACCTTAGATTTAATATACTATGAGCTTTATTTAGAATGTAGTAGGGTTAGACAGGGGTCCCATGAGTGTAGACAATGTACACAAATGACTCAGACTCTCACATAAATAGAAAAGAATAATATTGAAATATTAAGGAAGTGCTATTACGCTTGTTTTTAGAGTCTATGCATTTCAGCTCATAGTAAGCCATTTAAGATCCCTCTCTACTGTCATTTTATTTTTTTTTTTGAAGTTGAAAGTAACAAAAGTTTATAGATCAGAGAACACATTTGGATTAGTTGGTAATAGTTTAGTTCTCGCACCTTTAAATTTGTACCATTTGGTTTACGGTCTTTAATAAGCAACACATCTAATCTTTTTGATTTATAATTTGTATGAAGACTCTCTATCATGAAGGTATTTAACATCAACTGTCAATTTTAATTAAAAGAACTAGTTTATAGTTTATAAGTAATTTTGATCATGTCATTCTAAATTTTAGAGACTAATTTGGTTCTTATTAAGGTTCAAGGGCTAAATTGTTACAACACTACAAGAGACGAGGGTACTCCCGACGCACAAAAACATCGAAAAAAGTGAAAAAAACATCAGGAAATGATATGCCGATGTTTTTCACGACGTCGGGAATAACGTTGGAAGAAATGAATTGGGAGAGGCATTCCCGTCGTACCAACACGATGTCAAGAATGCATCTCTCGATACCGTGACATGCGTCGGCCAAAGTGGCGTTGGGAGTTCCTTTCCCAACAGACCTTATGTCGATGCATGACGCAGCGTTGGGAATGCTTTTTTCGACGTCTTTTGTGCATCGAGAAACTCTTCTCCGACGTGTCTAATGCATCCTAGTCCCGACGTTTCATTGCGTCGAGAATTCATTTTTATATTTTTTTTAAACATGTAATTTCTAATTTTTTTTCCTAAAATATTGTCCTCAAACATTCACAACCACATTCGGATTGCTCAAATATTTTTCCCGACGTTTTGGATTAAATTAAGACAAATTCAATATAAATTAATAAATTAAGAAATACAAACACAAATTAAAAAAAGATGTTTTAAAGTTAATAATACGAATAAGTTCAAAAAATATTAGTAAGTTTAATACAAAAAACGTAGTCCTCATAATACAAAAAGACGCAAACATAATAAAAAAGTCTCCTGACGAGGCGCGTACGCGTCATTCTACACCTTCGGTCCTACAATGATATAAAAGTAACTAAGTTTAGTACATATATCCATATGTTCACTGTATACCATCATTGCAAAAATTTAAGAATAATGAAGACATATATACGTACCACAAAGCTAGAGATCATGTGGTCGTCCCTGTTGTGCATGAGTGAAGTCTTCTATCAGCTTTTGCATTCGTTCAACTTGTGAAGCTAACGCTTGGTAATTTCTATCTTGTACTTCAATCCATTCCAAAACTTCATTAAGTTTAGCTTGTAATTCAATCTCTTTTTGTGTGGATTGTGAACAAGATGTCGAGGAACTGTTCGCACTCGTCGTCCTGCGGGCCTTCGGCTTGGGTCTCCAACCAAGGCCTTTTGAGTAGCCTGATCGTCTACCTAACACCTGATTGCATATCTCATCCTCAGAGAGTGGCTGACTACCCTAGGGTAGGCTGGGATTGGAGTTCCAGCATTTGATTCTGCAACAAATTTAAGAACTATGTTAGGTAACGCGCAAAAATATATAATGAAAGAGAATAATTAACAAGGGCATAACTTACATGTGCATCCTCTGCGGCCTGCGACACGAACGTCCCAGGTCGAACGTGTGTTTCTTTGAACAATTCCACACGATCGACCGACTCTCCTTTTCTCTCAATGAGCTCGTACTGTCGTTGTAGAAACGACTTAGACCCGCTACTATGACTATAAGGTTGCTTCTGTCTAGTAGTCTTGTTCGTCCGTGATTGCTCATGCATGAAAACAATTATATTGTCTATTTCTTATACATATTAAAACTTGAAATCATAACTAACTTCAAACTACGGACGCTACCATAACTGTAGGATAGTCAACACAATCTAACTATTAACAACAAAATACTTCAAGCTATCCTACTACCACCCCTTGAAACCATCCCAAATAGAAGCAAATTCAAAACAAAAAATGCTAACTGCAGGATAGCCATCTCAAATCAACAACAAAGATATTCAACACAAACAGGCTACAATAACTGCAGGATAGCTAAAACAAATCTTAACACACATATTATATTTTCAATTGAAAACATAAACCCCCTTCAAATTAAATGCAATACCCCCCCCCCCACACACACACATTCAAATTTGAATTCAACCATAACCCCCTACAAAAATTTCAATTTAGGTAGTAACCCCCCATTCAAATTTCAATTTAGCTAATAAATCACCCCTTCAAATTTCAATTTAAGTATAACCCCCTTCAAATTTCAATTTAACTATAACCCCCCTCCTCCAATTCAATTTTCAATTTAACTATAAACCATAAACCCTAAATCCTTCAAATTTCAATTTAACTATAAACTCCCCCCCTCCCCCAATTGAATTTTCAATTTAACCATAAATCCTAAATCCTAAATCCTTCAAATTTCAATTCAACCACAAATTACACACATTCTATACAAAAATACATTTAACAAACAAAAATCTATTCAAAAACAAAATCCTAAAACAATTTTCTTAAAAAAAAAATCCTAAAACTTATATTTAAACTAAACAAACTTTATATTTAAACTTACCTAAGGTGGCAGACGATGAGGGATGGCAACGACGACGGAACGGACGACGACGAGCTACAGACCGCGACGAATCTTCGTTTCTCTCTTCTCCCTTTCCCTTTCGTTTTCAGTTATGTGTAAAACAAAACTGAAACGTTTATAAAGGGGATCTCCCGATGCAGCACAAATACGTCGGGAGATCCCCTTTATGGCGTTGGGAATAAGGGTATTCCTGACACTCATTAAAAGGTTTTCCCAACGCACAATAATGTGTCGGGAAAACCCCTTATTTTCGATGTCGTTCTTGACGCACTGTGCATTACTTCGGAAATAAGGTGTATTTTAAATTTAATTTGGCCTTATTCCCGACGCCGTTTGGCCGACGCATGCTCGAAGCATCGCGAATACCCTTTTCCCAATGCCATTCCCGACGCCACAGTTTTCTCCGATGCAGTTTTCATAACGCGTCTGTCCGGCGTTGGGAATAACCTTATTTTCGACGTTCTTTGTGTCGATGTCCTTTTAGGCGTCGGAAAAGCCCCTATTTCTTGTAGTGCAAGTATTGTAACTATCTTTATCCTTACTGACTAAAGGTTAGATAATAATTTTTTACTTCTGTAGAAGCTTAAGACTATACCCAGAGCTATTTTCTCTTGGGAGTGCCCTTGCAACCAACGCCAATAACAAGAATGCAATAGAAAGGGCGTGGATTTGGTAAAAGTAGAATTAGGTTTCATAAAACTTGACTACTAAACCACTTGTAGGAGCATCAAGAAGACGACGATGAGGGAGGACGAGGAAGAGGATGAGGAAGATGACTAAATTGAAAACCAAGTTGTTTGTATCGACCAATCCAGCTTGGTAGAGGGAGGAAGGTGACATATGTTCATCGTTTATCAAAATATAAGAGGATGAGGAGGATGACTAATTGAAAGACAAGTTTAAAAAATATACCAATCAACCCCTCACCCTTCATATACCAAGAATGCAATATACAATTCCATGCTGATTTTGATAAATGGAGATTAGTGTTGTTAAGAAAAGGGATGAAATGGAAGCTTTTGTTACTATGTTTCCTTATTTTCTTTATTTGTTTTCTTGGAGGAAATTTATGATGGGGGCTTGAAGAAACCTAATGTTGTGTAGAAATTTATTTTAATGCATGTACAATATTCTAAAATATGTGCAATCTTATCTTTGCAAAATAGAGCAATAGCGATGTTTCACTCGCAAAAGAATATTAATAAAAGTAGGAAACGAACTTTATGGCGAACAGTAAAAGCAAGTATAAATATTTAAATTAATTGTATTTTGTAGACTACTAGCAATTAGGATTAGTATGTTATCCTAATTTGTTGTTGTATAGTGTCCACTACAAGTCGGGAGCACTGAGTGTAGATACTATGTCATGAAGTTTATGAGAGAAATTGTAAATAGGGGAAGCATTGTCATCTCGGATTCGGTATGTTATATATCAAACTATTTCTTTCGTGGGTATAATAATCTTCATGAATACTAATTCATTTATTTTGCATGTTTACAGATTGATACACGAAAACCGTACTCACATGCCGAGTTAGATGAGGTGTAGGTTGAGTTGGCTGATTTTTGGGTTCGTACACATGATTGCGACTTATTTGGGATTTTGAAGCAAGAAACTTTCTGTTGTGACTGATTTTTTTAATTGTTCATATGGAGGGTGAGGGGTTGATTGATATATTTTTGAAACCTTATGTTGTGGTCACCATTTTGAAACTTTGTTGATAGGTTATTTGTTTATAGGTGAATTGTTCATATAGAGGGGGATGATAGGGAAATTATTCTGAAACTTTGTTGTTGTAGCCATTCTGAAACTCTGATGGAATTGTATATTGGTTTTGTAAATAATAGGAATATTTGCAAAGCTTTGGAAATGATATGGTAAAAGGTTTTATATTTGATG

mRNA sequence

TTTATTTTTTACCTTTTCCCTTTCCCTCCATACAACCCCAATTTCCCTCTTGCTGATCTTCTCACAACCCACACGCTACCACTACCCTCTTCTCACAACTCACCCATCCGAATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGAGTAACTATCGAACGTTGTCGGTTTTGATGTGTAAGAGTTAAACCTAGCACTGTAGAAGTGGAAATCGACCTGAATGTTGATATTGAATCCAATAACTATGACAGCAAACCTGATTGCACATTCCATATGAAGAAGCATACTTTGACATCTTCATGACAACCGCCTCTAGCTACGTCATATGCTATTGGGCTGCTTATGCAACATAAGATTGATACACGAAAACCGTACTCACATGCCGAGTTAGATGAGGTGTAGGTTGAGTTGGCTGATTTTTGGGTTCGTACACATGATTGCGACTTATTTGGGATTTTGAAGCAAGAAACTTTCTGTTGTGACTGATTTTTTTAATTGTTCATATGGAGGGTGAGGGGTTGATTGATATATTTTTGAAACCTTATGTTGTGGTCACCATTTTGAAACTTTGTTGATAGGTTATTTGTTTATAGGTGAATTGTTCATATAGAGGGGGATGATAGGGAAATTATTCTGAAACTTTGTTGTTGTAGCCATTCTGAAACTCTGATGGAATTGTATATTGGTTTTGTAAATAATAGGAATATTTGCAAAGCTTTGGAAATGATATGGTAAAAGGTTTTATATTTGATG

Coding sequence (CDS)

ATGTCGTCGAATCTGCTACCATCCGAACGTCATCGAACCTGCTACCCTTCGAATGCTGTCGAACGCTGTTGCTACTTGCTAAGTACCATCCGAATGTTGTCAAAGGTCGCCGCTACCATCCGAACGCTGCCGCTCCCTTGCTCGCCGAATGTCGTAACTGAGCAAGTGCTCGATTCGAACTGA

Protein sequence

MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVVTEQVLDSN
Homology
[Close]
BLAST of Cmc11g0293201 vs. NCBI nr
Match: KAA0032544.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNV+
Sbjct: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVL 52

[Close]
BLAST of Cmc11g0293201 vs. NCBI nr
Match: TYJ98332.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 5.1e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRT Y SNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV
Sbjct: 1  MSSNLLPSERHRTYYASNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 52

[Close]
BLAST of Cmc11g0293201 vs. ExPASy TrEMBL
Match: A0A5A7SMZ5 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00570 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNV+
Sbjct: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVL 52

[Close]
BLAST of Cmc11g0293201 vs. ExPASy TrEMBL
Match: A0A5D3BF18 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00570 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MSSNLLPSERHRTCYPSNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 53
          MSSNLLPSERHRT Y SNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV
Sbjct: 1  MSSNLLPSERHRTYYASNAVERCCYLLSTIRMLSKVAATIRTLPLPCSPNVV 52

The following BLAST results are available for this feature:
BLAST of Cmc11g0293201 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032544.17.1e-2098.08DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo var. makuw... [more]
TYJ98332.15.1e-1896.15DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw... [more]
BLAST of Cmc11g0293201 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0293201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SMZ53.5e-2098.08DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucumis melo var. mak... [more]
A0A5D3BF182.5e-1896.15DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak... [more]
BLAST of Cmc11g0293201 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0293201.1Cmc11g0293201.1mRNA