Cmc11g0293011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0293011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Very-long-chain 3-oxoacyl-CoA synthase
Location	CMiso1.1chr11: 9087892 .. 9088167 (-)
RNA-Seq Expression	Cmc11g0293011
Synteny	Cmc11g0293011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCTTACTATTTCTTGTGCTCAATTGGGATAAAACCAAAGTGGAAAAAATTTGTTACTAACTGCCAAATTTTGCAGTTAGTGTTTGGGTTTGTGGTTTCGGGTTGGATGTTGTATGAGCATTTCATTGGTGGATCGTCATTATCCCTTGGTGGATGCTCGGGTATCAGGGGTTGGTATTTCAATATTGTTTTCAATGCCTCTCTTTTGGCTCTTTTCATGGACTTTCATTCTAAAAGCTATGTGTTGCACGGCCAACGCAAACAACAATAA

mRNA sequence

ATGTATGCTTACTATTTCTTGTGCTCAATTGGGATAAAACCAAAGTGGAAAAAATTTGTTACTAACTGCCAAATTTTGCAGTTAGTGTTTGGGTTTGTGGTTTCGGGTTGGATGTTGTATGAGCATTTCATTGGTGGATCGTCATTATCCCTTGGTGGATGCTCGGGTATCAGGGGTTGGTATTTCAATATTGTTTTCAATGCCTCTCTTTTGGCTCTTTTCATGGACTTTCATTCTAAAAGCTATGTGTTGCACGGCCAACGCAAACAACAATAA

Coding sequence (CDS)

ATGTATGCTTACTATTTCTTGTGCTCAATTGGGATAAAACCAAAGTGGAAAAAATTTGTTACTAACTGCCAAATTTTGCAGTTAGTGTTTGGGTTTGTGGTTTCGGGTTGGATGTTGTATGAGCATTTCATTGGTGGATCGTCATTATCCCTTGGTGGATGCTCGGGTATCAGGGGTTGGTATTTCAATATTGTTTTCAATGCCTCTCTTTTGGCTCTTTTCATGGACTTTCATTCTAAAAGCTATGTGTTGCACGGCCAACGCAAACAACAATAA

Protein sequence

MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGWYFNIVFNASLLALFMDFHSKSYVLHGQRKQQ

Homology

[Close]

BLAST of Cmc11g0293011 vs. NCBI nr
Match: XP_008455969.2 (PREDICTED: elongation of fatty acids protein 3-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 4.0e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW
Sbjct: 180 MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 239

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
           YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ
Sbjct: 240 YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 270

[Close]

BLAST of Cmc11g0293011 vs. NCBI nr
Match: XP_038888900.1 (elongation of fatty acids protein 3-like [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 6.1e-31
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLCSIGIKPKWKK VTNCQILQ VF  VVSGWMLYEHF  G S SLGGCSG++ W
Sbjct: 178 MYGYYFLCSIGIKPKWKKLVTNCQILQFVFALVVSGWMLYEHF--GRSSSLGGCSGMKSW 237

Query: 61  YFNIVFNASLLALFMDFHSKSYVLH 86
            F+IVF ASLLALF+DFHSKSYV+H
Sbjct: 238 CFSIVFVASLLALFIDFHSKSYVMH 260

[Close]

BLAST of Cmc11g0293011 vs. NCBI nr
Match: XP_022155013.1 (elongation of fatty acids protein 3-like [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 3.5e-26
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLCS+G++P WK+ VT+CQILQ VF FV SGWMLYEHF GGS+    GCSGI GW
Sbjct: 179 MYGYYFLCSVGVRPTWKRLVTDCQILQFVFSFVASGWMLYEHF-GGSA---AGCSGIWGW 238

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRK 90
            FN VFNASLLALF++FH KSY  +  ++
Sbjct: 239 CFNAVFNASLLALFLNFHFKSYAANANKR 263

[Close]

BLAST of Cmc11g0293011 vs. NCBI nr
Match: XP_022927675.1 (elongation of fatty acids protein 3-like [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC+ GI+P+WK+ VT+CQILQ +F FV+SG MLYEHF GGS    GGCSGIRGW
Sbjct: 182 MYGYYFLCTFGIRPRWKRLVTDCQILQFIFSFVISGQMLYEHF-GGSG---GGCSGIRGW 241

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
            FN VFNASLLALF++FH KSY  + +++ +
Sbjct: 242 CFNAVFNASLLALFINFHLKSYAANRKKRME 268

[Close]

BLAST of Cmc11g0293011 vs. NCBI nr
Match: KAG6588814.1 (Elongation of fatty acids protein 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC+ GI+P+WK+ VT+CQILQ +F FV+SG MLYEHF GGS    GGCSGIRGW
Sbjct: 182 MYGYYFLCTFGIRPRWKRLVTDCQILQFIFSFVISGQMLYEHF-GGSG---GGCSGIRGW 241

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
            FN VFNASLLALF++FH KSY  + +++ +
Sbjct: 242 CFNAVFNASLLALFINFHLKSYAANRKKRME 268

[Close]

BLAST of Cmc11g0293011 vs. ExPASy Swiss-Prot
Match: P40319 (Elongation of fatty acids protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELO3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFV---VSGWMLYEH-FIGGSSLSLGGCSG 60
           MY YYFL S GI+  WK++VT  QI+Q +   V    + +  Y H ++ G   + G C G
Sbjct: 221 MYWYYFLSSCGIRVWWKQWVTRFQIIQFLIDLVFVYFATYTFYAHKYLDGILPNKGTCYG 280

Query: 61  IR-GWYFNIVFNASLLALFMDFHSKSYVLHGQR 89
            +    +  +   S L LF+ F+ +SY   G++
Sbjct: 281 TQAAAAYGYLILTSYLLLFISFYIQSYKKGGKK 313

[Close]

BLAST of Cmc11g0293011 vs. ExPASy Swiss-Prot
Match: Q9SYY4 (Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana OX=3702 GN=HOS3 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-04
Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1   MYAYYFLCSIGIK-PKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRG 60
           +Y Y F    G+    +  FV NCQ++ +    V    +L  H      L  GGC+GI  
Sbjct: 197 VYGYRFWTGFGLPGSAFPSFVVNCQLVLVGCNLVSHAGVLTMH------LFKGGCNGIGA 256

Query: 61  WYFNIVFNASLLALFMDFHSKSY 83
           W  N V N ++L LF++F+ + +
Sbjct: 257 WGLNSVLNGAILLLFLNFYVRMH 273

[Close]

BLAST of Cmc11g0293011 vs. ExPASy Swiss-Prot
Match: Q54CJ4 (Elongation of fatty acids protein A OS=Dictyostelium discoideum OX=44689 GN=eloA PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-04
Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYF    GI P WKK +T CQI+Q +    +S  + +  +    + +   CSG   W
Sbjct: 180 MYFYYFQTERGINPWWKKHITTCQIIQFIVD--MSSHLAWHFYDTQGNHNSNYCSGT--W 239

Query: 61  ---YFNIVFNASLLALFMDFHSKSY 83
               F+     S L LF+ F  K+Y
Sbjct: 240 ATSAFSDFVILSFLGLFIQFFVKAY 260

[Close]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL
Match: A0A1S3C245 (elongation of fatty acids protein 3-like OS=Cucumis melo OX=3656 GN=LOC103496032 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW
Sbjct: 180 MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 239

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
           YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ
Sbjct: 240 YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 270

[Close]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL
Match: A0A6J1DLU5 (Very-long-chain 3-oxoacyl-CoA synthase OS=Momordica charantia OX=3673 GN=LOC111022155 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLCS+G++P WK+ VT+CQILQ VF FV SGWMLYEHF GGS+    GCSGI GW
Sbjct: 179 MYGYYFLCSVGVRPTWKRLVTDCQILQFVFSFVASGWMLYEHF-GGSA---AGCSGIWGW 238

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRK 90
            FN VFNASLLALF++FH KSY  +  ++
Sbjct: 239 CFNAVFNASLLALFLNFHFKSYAANANKR 263

[Close]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL
Match: A0A6J1EPN2 (Very-long-chain 3-oxoacyl-CoA synthase OS=Cucurbita moschata OX=3662 GN=LOC111434494 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC+ GI+P+WK+ VT+CQILQ +F FV+SG MLYEHF GGS    GGCSGIRGW
Sbjct: 182 MYGYYFLCTFGIRPRWKRLVTDCQILQFIFSFVISGQMLYEHF-GGSG---GGCSGIRGW 241

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
            FN VFNASLLALF++FH KSY  + +++ +
Sbjct: 242 CFNAVFNASLLALFINFHLKSYAANRKKRME 268

[Close]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL
Match: A0A6J1JN46 (Very-long-chain 3-oxoacyl-CoA synthase OS=Cucurbita maxima OX=3661 GN=LOC111486707 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.4e-26
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC+ GI+P WK+ VT+CQILQ +F FVVSG MLYEHF GGS    GGCSG RGW
Sbjct: 182 MYGYYFLCTFGIRPSWKRLVTDCQILQFIFSFVVSGQMLYEHF-GGSG---GGCSGFRGW 241

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRKQQ 92
            FN VFNASLLALF++FH KSY  + +++ +
Sbjct: 242 CFNAVFNASLLALFINFHLKSYAANRKKRME 268

[Close]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL
Match: A0A0A0KJH8 (Very-long-chain 3-oxoacyl-CoA synthase OS=Cucumis sativus OX=3659 GN=Csa_6G411300 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.2e-25
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC+ GI+PKWK+ VT+CQILQ VF FVVSG MLY+HF GGS+   GGCSG  GW
Sbjct: 182 MYGYYFLCTFGIRPKWKRLVTDCQILQFVFSFVVSGQMLYDHF-GGSA---GGCSGFLGW 241

Query: 61  YFNIVFNASLLALFMDFHSKSYVLHGQRK 90
            FN VFN SLLALF++FH KSY  + ++K
Sbjct: 242 CFNAVFNGSLLALFINFHLKSYAANRKKK 266

[Close]

BLAST of Cmc11g0293011 vs. TAIR 10
Match: AT3G06470.1 (GNS1/SUR4 membrane protein family )

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-26
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRGW 60
           MY YYFLC++G +PKWK+ VT+CQI+Q VF F +SGWML EH  G       GC+GI GW
Sbjct: 190 MYGYYFLCAVGSRPKWKRLVTDCQIVQFVFSFGLSGWMLREHLFG------SGCTGIWGW 249

Query: 61  YFNIVFNASLLALFMDFHSKSYV 84
            FN  FNASLLALF +FHSK+YV
Sbjct: 250 CFNAAFNASLLALFSNFHSKNYV 266

[Close]

BLAST of Cmc11g0293011 vs. TAIR 10
Match: AT3G06460.1 (GNS1/SUR4 membrane protein family )

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-20
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 1   MYAYYFLCSIGIKPKWKKFVTNCQILQLVFGF-VVSGWMLYEHFIGGSSLSLGGCSGIRG 60
           MY YYFLC+IG +PKWKK VTN Q++Q  FG  + + WML EH+ G       GC+GI  
Sbjct: 187 MYGYYFLCAIGSRPKWKKLVTNFQMVQFAFGMGLGAAWMLPEHYFG------SGCAGIWT 246

Query: 61  WYFNIVFNASLLALFMDFHSKSY 83
            YFN VF ASLLALF +FHSK+Y
Sbjct: 247 VYFNGVFTASLLALFYNFHSKNY 263

[Close]

BLAST of Cmc11g0293011 vs. TAIR 10
Match: AT4G36830.1 (GNS1/SUR4 membrane protein family )

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1   MYAYYFLCSIGIK-PKWKKFVTNCQILQLVFGFVVSGWMLYEHFIGGSSLSLGGCSGIRG 60
           +Y Y F    G+    +  FV NCQ++ +    V    +L  H      L  GGC+GI  
Sbjct: 197 VYGYRFWTGFGLPGSAFPSFVVNCQLVLVGCNLVSHAGVLTMH------LFKGGCNGIGA 256

Query: 61  WYFNIVFNASLLALFMDFHSKSY 83
           W  N V N ++L LF++F+ + +
Sbjct: 257 WGLNSVLNGAILLLFLNFYVRMH 273

The following BLAST results are available for this feature:

BLAST of Cmc11g0293011 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455969.2	4.0e-46	100.00	PREDICTED: elongation of fatty acids protein 3-like [Cucumis melo]	[more]
XP_038888900.1	6.1e-31	80.00	elongation of fatty acids protein 3-like [Benincasa hispida]	[more]
XP_022155013.1	3.5e-26	66.29	elongation of fatty acids protein 3-like [Momordica charantia]	[more]
XP_022927675.1	4.5e-26	64.84	elongation of fatty acids protein 3-like [Cucurbita moschata]	[more]
KAG6588814.1	4.5e-26	64.84	Elongation of fatty acids protein 3-like protein, partial [Cucurbita argyrosperm...	[more]

BLAST of Cmc11g0293011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40319	1.0e-04	33.33	Elongation of fatty acids protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204...	[more]
Q9SYY4	5.1e-04	31.33	Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana OX=3702 GN=HOS3...	[more]
Q54CJ4	6.6e-04	34.12	Elongation of fatty acids protein A OS=Dictyostelium discoideum OX=44689 GN=eloA...	[more]

BLAST of Cmc11g0293011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C245	1.9e-46	100.00	elongation of fatty acids protein 3-like OS=Cucumis melo OX=3656 GN=LOC103496032...	[more]
A0A6J1DLU5	1.7e-26	66.29	Very-long-chain 3-oxoacyl-CoA synthase OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1EPN2	2.2e-26	64.84	Very-long-chain 3-oxoacyl-CoA synthase OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1JN46	8.4e-26	64.84	Very-long-chain 3-oxoacyl-CoA synthase OS=Cucurbita maxima OX=3661 GN=LOC1114867...	[more]
A0A0A0KJH8	3.2e-25	66.29	Very-long-chain 3-oxoacyl-CoA synthase OS=Cucumis sativus OX=3659 GN=Csa_6G41130...	[more]

BLAST of Cmc11g0293011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06470.1	4.8e-26	62.65	GNS1/SUR4 membrane protein family	[more]
AT3G06460.1	3.0e-20	57.83	GNS1/SUR4 membrane protein family	[more]
AT4G36830.1	3.6e-05	31.33	GNS1/SUR4 membrane protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002076	ELO family	PFAM	PF01151	ELO	coord: 1..89 e-value: 1.1E-17 score: 64.5
IPR002076	ELO family	PANTHER	PTHR11157	FATTY ACID ACYL TRANSFERASE-RELATED	coord: 1..83
None	No IPR available	PANTHER	PTHR11157:SF134	ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0293011.1	Cmc11g0293011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009922	fatty acid elongase activity