Cmc11g0290091 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0290091
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr11: 4816255 .. 4816746 (+)
RNA-Seq ExpressionCmc11g0290091
SyntenyCmc11g0290091
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCACTATAGTCATTGATGCTCTCAAAGATGATCAATGGATCTTGGCTATGCAAGAAGAACTTCTGCAACTTGAGAGAAATCAAGTTTCGAACCTTGTTCCCAAACTAGCCCATGCAAACATTATAGGGACAAGATGGATCTTTAAAAACAAAATCGATGAACAGGGACGATTGATTCGTAACAAGGCTCGGTTAATTGCTCAGGGATATACTCAAATTGAAGGCCTTGATTTTGGTGAGACATTTGCTCCCGTTGCTAGGCTTGAAGCCATACGACTACTCCTGAGTTTTGCATGTTTTAGAAGATTTAAACTTTTTCAGATGGATGTAAAAAGCACTTTTCTGAATGGGTATTTGTCAGAAGAAGTCTATGATGCACAACCCAATGACTTCATTGATCCTGTTCATTATGATCATGTATATAAACTACAAAAGACTTTGTACGACCTCAAACAGGCTCCCAAAGTGTGGTATGAGAGGCTCTAA

mRNA sequence

ATGGAACCCACTATAGTCATTGATGCTCTCAAAGATGATCAATGGATCTTGGCTATGCAAGAAGAACTTCTGCAACTTGAGAGAAATCAAGTTTCGAACCTTGTTCCCAAACTAGCCCATGCAAACATTATAGGGACAAGATGGATCTTTAAAAACAAAATCGATGAACAGGGACGATTGATTCGTAACAAGGCTCGGTTAATTGCTCAGGGATATACTCAAATTGAAGGCCTTGATTTTGGTGAGACATTTGCTCCCGTTGCTAGGCTTGAAGCCATACGACTACTCCTGAGTTTTGCATGTTTTAGAAGATTTAAACTTTTTCAGATGGATGTAAAAAGCACTTTTCTGAATGGGTATTTGTCAGAAGAAGTCTATGATGCACAACCCAATGACTTCATTGATCCTGTTCATTATGATCATGTATATAAACTACAAAAGACTTTGTACGACCTCAAACAGGCTCCCAAAGTGTGGTATGAGAGGCTCTAA

Coding sequence (CDS)

ATGGAACCCACTATAGTCATTGATGCTCTCAAAGATGATCAATGGATCTTGGCTATGCAAGAAGAACTTCTGCAACTTGAGAGAAATCAAGTTTCGAACCTTGTTCCCAAACTAGCCCATGCAAACATTATAGGGACAAGATGGATCTTTAAAAACAAAATCGATGAACAGGGACGATTGATTCGTAACAAGGCTCGGTTAATTGCTCAGGGATATACTCAAATTGAAGGCCTTGATTTTGGTGAGACATTTGCTCCCGTTGCTAGGCTTGAAGCCATACGACTACTCCTGAGTTTTGCATGTTTTAGAAGATTTAAACTTTTTCAGATGGATGTAAAAAGCACTTTTCTGAATGGGTATTTGTCAGAAGAAGTCTATGATGCACAACCCAATGACTTCATTGATCCTGTTCATTATGATCATGTATATAAACTACAAAAGACTTTGTACGACCTCAAACAGGCTCCCAAAGTGTGGTATGAGAGGCTCTAA

Protein sequence

MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLIRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGYLSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL
Homology
BLAST of Cmc11g0290091 vs. NCBI nr
Match: TYK13615.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPTIVI+ALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL
Sbjct: 11  MEPTIVIEALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 70

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNKARLIAQGY QIEGLDFG+TFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY
Sbjct: 71  IRNKARLIAQGYAQIEGLDFGKTFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 130

Query: 121 LSEEVYDAQPNDFIDPVHYDH 142
           LSEEVYDAQPNDFIDPVHYDH
Sbjct: 131 LSEEVYDAQPNDFIDPVHYDH 151

BLAST of Cmc11g0290091 vs. NCBI nr
Match: KAA0045970.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.4e-70
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPTIVIDALKDDQWILAM+EELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGR+
Sbjct: 11  MEPTIVIDALKDDQWILAMEEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRV 70

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNKARLIAQGY QIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVK TFLNGY
Sbjct: 71  IRNKARLIAQGYAQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKITFLNGY 130

Query: 121 LSEEVYDAQPNDFIDPVHYDH 142
           LSEEVYDAQPNDFID VHYDH
Sbjct: 131 LSEEVYDAQPNDFIDLVHYDH 151

BLAST of Cmc11g0290091 vs. NCBI nr
Match: KAA0035460.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 5.0e-68
Identity = 130/163 (79.75%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPT V  AL D+ WILA+QEELLQ ERNQV NLVPK  H NIIGT+WIFKNKIDEQGRL
Sbjct: 46  MEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRL 105

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNK RL+AQGY+QI+GLDFGETFAP ARLEAIRL+LSF CFR FKLFQMDVKS FLNGY
Sbjct: 106 IRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 165

Query: 121 LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
           LSEEVY AQP  F+D VH+DHVYKL+K LY LKQAP+ WYERL
Sbjct: 166 LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERL 208

BLAST of Cmc11g0290091 vs. NCBI nr
Match: TYK31065.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 5.0e-68
Identity = 130/163 (79.75%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPT V  AL D+ WILA+QEELLQ ERNQV NLVPK  H NIIGT+WIFKNKIDEQGRL
Sbjct: 46  MEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRL 105

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNK RL+AQGY+QI+GLDFGETFAP ARLEAIRL+LSF CFR FKLFQMDVKS FLNGY
Sbjct: 106 IRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 165

Query: 121 LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
           LSEEVY AQP  F+D VH+DHVYKL+K LY LKQAP+ WYERL
Sbjct: 166 LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERL 208

BLAST of Cmc11g0290091 vs. NCBI nr
Match: KAA0059225.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 128/163 (78.53%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1    MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
            +EPT V  AL D+ WIL +QEELLQ ERNQV  LVPK  +ANIIGT+WIFKNK DE+GR+
Sbjct: 987  LEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRV 1046

Query: 61   IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
            IRNKARL+AQGY+QIEGLDFGETFAPVARLEAIRLLLS+ACF RFKLFQMDVKS FLNGY
Sbjct: 1047 IRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGY 1106

Query: 121  LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
            L EEVY AQP  F+DPVH DHVYKL+K LY LKQAP+ WYERL
Sbjct: 1107 LCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRAWYERL 1149

BLAST of Cmc11g0290091 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.3e-33
Identity = 75/163 (46.01%), Postives = 102/163 (62.58%), Query Frame = 0

Query: 2    EPTIVIDALKDDQWILAMQEELLQLERNQVSNLV-PKLAHANIIGTRWIFKNKIDEQGRL 61
            EP   I ALKD++W  AM  E+     N   +LV P  +H  I+G RWIF  K +  G L
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 62   IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 121
             R KARL+A+GY Q  GLD+ ETF+PV +  +IR++L  A  R + + Q+DV + FL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 122  LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
            L+++VY +QP  FID    ++V KL+K LY LKQAP+ WY  L
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVEL 1117

BLAST of Cmc11g0290091 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-32
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 2    EPTIVIDALKDDQWILAMQEELLQLERNQVSNLV-PKLAHANIIGTRWIFKNKIDEQGRL 61
            EP   I A+KDD+W  AM  E+     N   +LV P      I+G RWIF  K +  G L
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 62   IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 121
             R KARL+A+GY Q  GLD+ ETF+PV +  +IR++L  A  R + + Q+DV + FL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 122  LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
            L++EVY +QP  F+D    D+V +L+K +Y LKQAP+ WY  L
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVEL 1100

BLAST of Cmc11g0290091 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25
Identity = 64/153 (41.83%), Postives = 91/153 (59.48%), Query Frame = 0

Query: 11   KDDQ--WILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLIRNKARLI 70
            +DD+  W  A+  EL   + N    +  +  + NI+ +RW+F  K +E G  IR KARL+
Sbjct: 900  RDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLV 959

Query: 71   AQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGYLSEEVYDA 130
            A+G+TQ   +D+ ETFAPVAR+ + R +LS       K+ QMDVK+ FLNG L EE+Y  
Sbjct: 960  ARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMR 1019

Query: 131  QPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYE 162
             P       + D+V KL K +Y LKQA + W+E
Sbjct: 1020 LPQGI--SCNSDNVCKLNKAIYGLKQAARCWFE 1050

BLAST of Cmc11g0290091 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-25
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 0

Query: 6   VIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLIRNKA 65
           V+   + +Q + AMQEE+  L++N    LV        +  +W+FK K D   +L+R KA
Sbjct: 817 VLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKA 876

Query: 66  RLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGYLSEEV 125
           RL+ +G+ Q +G+DF E F+PV ++ +IR +LS A     ++ Q+DVK+ FL+G L EE+
Sbjct: 877 RLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEI 936

Query: 126 YDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWY 161
           Y  QP  F        V KL K+LY LKQAP+ WY
Sbjct: 937 YMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWY 971

BLAST of Cmc11g0290091 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.7e-19
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 2   EPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLI 61
           EP  VI ALKD  W  AMQEEL  L RN+   LVP   + NI+G +W+FK K+   G L 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 62  RNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFA 101
           R KARL+A+G+ Q EG+ F ET++PV R   IR +L+ A
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

BLAST of Cmc11g0290091 vs. ExPASy TrEMBL
Match: A0A5D3CPZ4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001190 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.2e-72
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPTIVI+ALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL
Sbjct: 11  MEPTIVIEALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 70

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNKARLIAQGY QIEGLDFG+TFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY
Sbjct: 71  IRNKARLIAQGYAQIEGLDFGKTFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 130

Query: 121 LSEEVYDAQPNDFIDPVHYDH 142
           LSEEVYDAQPNDFIDPVHYDH
Sbjct: 131 LSEEVYDAQPNDFIDPVHYDH 151

BLAST of Cmc11g0290091 vs. ExPASy TrEMBL
Match: A0A5A7TS44 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005180 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.6e-70
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPTIVIDALKDDQWILAM+EELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGR+
Sbjct: 11  MEPTIVIDALKDDQWILAMEEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRV 70

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNKARLIAQGY QIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVK TFLNGY
Sbjct: 71  IRNKARLIAQGYAQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKITFLNGY 130

Query: 121 LSEEVYDAQPNDFIDPVHYDH 142
           LSEEVYDAQPNDFID VHYDH
Sbjct: 131 LSEEVYDAQPNDFIDLVHYDH 151

BLAST of Cmc11g0290091 vs. ExPASy TrEMBL
Match: A0A5A7SWP6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001070 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 130/163 (79.75%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPT V  AL D+ WILA+QEELLQ ERNQV NLVPK  H NIIGT+WIFKNKIDEQGRL
Sbjct: 46  MEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRL 105

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNK RL+AQGY+QI+GLDFGETFAP ARLEAIRL+LSF CFR FKLFQMDVKS FLNGY
Sbjct: 106 IRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 165

Query: 121 LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
           LSEEVY AQP  F+D VH+DHVYKL+K LY LKQAP+ WYERL
Sbjct: 166 LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERL 208

BLAST of Cmc11g0290091 vs. ExPASy TrEMBL
Match: A0A5D3E6X3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003230 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 130/163 (79.75%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
           MEPT V  AL D+ WILA+QEELLQ ERNQV NLVPK  H NIIGT+WIFKNKIDEQGRL
Sbjct: 46  MEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIFKNKIDEQGRL 105

Query: 61  IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
           IRNK RL+AQGY+QI+GLDFGETFAP ARLEAIRL+LSF CFR FKLFQMDVKS FLNGY
Sbjct: 106 IRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQMDVKSVFLNGY 165

Query: 121 LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
           LSEEVY AQP  F+D VH+DHVYKL+K LY LKQAP+ WYERL
Sbjct: 166 LSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRAWYERL 208

BLAST of Cmc11g0290091 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.8e-67
Identity = 128/163 (78.53%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1    MEPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRL 60
            +EPT V  AL D+ WIL +QEELLQ ERNQV  LVPK  +ANIIGT+WIFKNK DE+GR+
Sbjct: 987  LEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRV 1046

Query: 61   IRNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGY 120
            IRNKARL+AQGY+QIEGLDFGETFAPVARLEAIRLLLS+ACF RFKLFQMDVKS FLNGY
Sbjct: 1047 IRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGY 1106

Query: 121  LSEEVYDAQPNDFIDPVHYDHVYKLQKTLYDLKQAPKVWYERL 164
            L EEVY AQP  F+DPVH DHVYKL+K LY LKQAP+ WYERL
Sbjct: 1107 LCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRAWYERL 1149

BLAST of Cmc11g0290091 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 111.3 bits (277), Expect = 7.3e-25
Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 2   EPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLI 61
           EP+   +A +   W  AM +E+  +E      +     +   IG +W++K K +  G + 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 62  RNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFACFRRFKLFQMDVKSTFLNGYL 121
           R KARL+A+GYTQ EG+DF ETF+PV +L +++L+L+ +    F L Q+D+ + FLNG L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 122 SEEVYDAQPNDFI----DPVHYDHVYKLQKTLYDLKQAPKVWY 161
            EE+Y   P  +     D +  + V  L+K++Y LKQA + W+
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247

BLAST of Cmc11g0290091 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-20
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 2   EPTIVIDALKDDQWILAMQEELLQLERNQVSNLVPKLAHANIIGTRWIFKNKIDEQGRLI 61
           EP  VI ALKD  W  AMQEEL  L RN+   LVP   + NI+G +W+FK K+   G L 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 62  RNKARLIAQGYTQIEGLDFGETFAPVARLEAIRLLLSFA 101
           R KARL+A+G+ Q EG+ F ET++PV R   IR +L+ A
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK13615.11.3e-7197.87gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0045970.15.4e-7096.45gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0035460.15.0e-6879.75gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK31065.15.0e-6879.75gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0059225.11.6e-6678.53gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q94HW29.3e-3346.01Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.5e-3244.79Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041461.9e-2541.83Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109783.2e-2540.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925207.7e-1950.51Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5D3CPZ46.2e-7297.87Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G... [more]
A0A5A7TS442.6e-7096.45Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G... [more]
A0A5A7SWP62.4e-6879.75Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G... [more]
A0A5D3E6X32.4e-6879.75Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
A0A5A7V0467.8e-6778.53Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G... [more]
Match NameE-valueIdentityDescription
AT4G23160.17.3e-2536.20cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.15.4e-2050.51Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 30..162
e-value: 2.3E-38
score: 132.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 18..162
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 18..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0290091.1Cmc11g0290091.1mRNA