Cmc11g0290021 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0290021
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCMiso1.1chr11: 4763221 .. 4765261 (-)
RNA-Seq ExpressionCmc11g0290021
SyntenyCmc11g0290021
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAATGATTAATGTCACCGTTGAAACAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGAGTTCCCGTACTGACAAAGAATCCGGCGGGAATTCCGGCCAATCTCTGATCCTGACAAAGAACAATTGTCGAATCAAAAAACGATTTCATTTGTGCCGCCATAGATCCGTACCTCGTCGGAAATCCAAACAAGAATCCATCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACGCCATCATCCTTCACCGGAACTCTCATCTGTTCCAGCGTTTCCAACGGCAGAGTCTCCGGCACCTTAAACAAAACACCTTCGACGCCGTCAACAGAATCGACTCCTTTCTTCATCCTCTTGGCCAAGAGATCGACGTGACCGTACATGGAGTAATAGACGATGAAGATTCTGAGATTCCTGGAGATTTCTCCGGCTTTGGATTTTAGTTGATCGGGAATTGGAATTGGAATTGGAATTGGATTTGTATCGGAGACGGTTACCAATGGTCCGTTCTTGCTAGGTACGCATCCGTTCCCTTTCCCCATTTTTGGTAAAATTGAGAAATCTGGATTGAATTATTGAATTGGAGTTTGAATTGATGATGATGATAACGATTAATGGAAGCTAAAGGGGAAATTTGGAATTGATATACTCATCGCTGGCATTTTCTAGATATATGATTGACTTCTTCTTCTTCATCATCTTCATCATCTTCTTATTCTTCTTAATACGAAAATCTTCATTATTTTATGTCTAATCTTTAATGGCAATTTCAAATTTACTTTGGAAAATAGAAGAATCAAAATTGAAACCGAAACAAATGAACAGTTATTACTGTTTTGTGACACTATTCCTACCGACATTAAAAGTCTGTCACCACTTTTTGAAAATACAAAAAGCTCTTTCCTTTTCCAACAAAACACTCCTGGTATTTTTGTTAAATGAAAAAATACTTTAAAATATAACAAAATTTTACTTTCCATCTTATATTAGTAAATCGAGATTGACATGTATGAATATTTAAATATATTTATAAATAAATTGACTAATGATATTTTAAAACATATTGATCATTAAAAATTATAAATTTATCATAAATTAATGACTATTACAAACAGAATAATAAATTGCATGAAGTTAAAAAAAAAATCTTTATTTCTCTAGTTTTGGGTATTTAGGACATTTTTTTTGGCTTCCATAACTCATTTTTCTTTTTAAGTAATATAAGTTTGTATTAAGAATTTAAATTGATACATTTATAAAAGCTTAGAATTAAAATGAATATATGTGGTGTAATTGATATAAAGTACAAATGAATATTTTTCTTGATATTTATCTATTGATGTGTTTGTATGTTATAAGTTACATTAATTAAATTACGGGTATTTATTCTAGAGTCCCTAATTATTATAAAATATACTAACATTCTTGCCCTTAGATAAATTTATTAGATATAAAATTGAAATTTTGTGTCTAATACAATAGCAAACTTTCAATTTTTTATCAAATGAATCAGTGAATTTTTTGAAATGTTGTATTGGTCGATGACTTTTTTATACTATTTAAAACTTAATAGTAAAAGTTGATTAGATTCTTAGATGACTAATTTATCCTTAAATTCAAATTGTGATATAAAACCAACAATAACAAGCAACTTAGTCGTGGATTTAACTTTTTATTAGAATTTTCTTATATTAATGATTTAAAGGTAAGATTCTCCACAGAGATCAGTTCTTCGTGGGAAATCTCGTCCCAATCCTCGTGGAAAATTTCACAAGGAATGAAATGAGCAATGAGATCAGAACAAAGAAAGGCATCCCAACCTGGCTCGGTGGACATCTCTAATTGGTAGTTAGGAATCTCGCTTGGACTTAAAAAAAGAAATTGATGCAACAAATTTGGGTATAAAATAGGAACAAAGGAAATAAATAATACCTTTAATTGGAATGTACAGTTTGTATACACCTGTTGATATTGTTGTCACTTTTTGTTTAAATAACAAAATTATATGAATTAGTTATTTAAATTTGTTTATATT

mRNA sequence

CCCAAATGATTAATGTCACCGTTGAAACAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGAGTTCCCGTACTGACAAAGAATCCGGCGGGAATTCCGGCCAATCTCTGATCCTGACAAAGAACAATTGTCGAATCAAAAAACGATTTCATTTGTGCCGCCATAGATCCGTACCTCGTCGGAAATCCAAACAAGAATCCATCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACGCCATCATCCTTCACCGGAACTCTCATCTGTTCCAGCGTTTCCAACGGCAGAGTCTCCGGCACCTTAAACAAAACACCTTCGACGCCGTCAACAGAATCGACTCCTTTCTTCATCCTCTTGGCCAAGAGATCGACGTGACCGTACATGGAGTAATAGACGATGAAGATTCTGAGATTCCTGGAGATTTCTCCGGCTTTGGATTTTAGTTGATCGGGAATTGGAATTGGAATTGGAATTGGATTTGTATCGGAGACGGTTACCAATGGTCCGTTCTTGCTAGAGATCAGTTCTTCGTGGGAAATCTCGTCCCAATCCTCGTGGAAAATTTCACAAGGAATGAAATGAGCAATGAGATCAGAACAAAGAAAGGCATCCCAACCTGGCTCGGTGGACATCTCTAATTGGTAGTTAGGAATCTCGCTTGGACTTAAAAAAAGAAATTGATGCAACAAATTTGGGTATAAAATAGGAACAAAGGAAATAAATAATACCTTTAATTGGAATGTACAGTTTGTATACACCTGTTGATATTGTTGTCACTTTTTGTTTAAATAACAAAATTATATGAATTAGTTATTTAAATTTGTTTATATT

Coding sequence (CDS)

ATGATTAATGTCACCGTTGAAACAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGAGTTCCCGTACTGACAAAGAATCCGGCGGGAATTCCGGCCAATCTCTGATCCTGACAAAGAACAATTGTCGAATCAAAAAACGATTTCATTTGTGCCGCCATAGATCCGTACCTCGTCGGAAATCCAAACAAGAATCCATCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACGCCATCATCCTTCACCGGAACTCTCATCTGTTCCAGCGTTTCCAACGGCAGAGTCTCCGGCACCTTAAACAAAACACCTTCGACGCCGTCAACAGAATCGACTCCTTTCTTCATCCTCTTGGCCAAGAGATCGACGTGACCGTACATGGAGTAATAGACGATGAAGATTCTGAGATTCCTGGAGATTTCTCCGGCTTTGGATTTTAG

Protein sequence

MINVTVETNNLRRRLLAAALSSRTDKESGGNSGQSLILTKNNCRIKKRFHLCRHRSVPRRKSKQESIRLHHLLHGNHRHAIILHRNSHLFQRFQRQSLRHLKQNTFDAVNRIDSFLHPLGQEIDVTVHGVIDDEDSEIPGDFSGFGF
Homology
[Close]
BLAST of Cmc11g0290021 vs. NCBI nr
Match: GER56671.1 (DNA-directed RNA polymerase subunit beta' [Striga asiatica])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 13  RRLLAAALSSRTDKESGGNSGQSLILTKNNCRIKKRFHLCRHRSVPRRKSKQESIRLHHL 72
           + ++   L+ R DKE    + + L+L +  C IK+  HL  H SVPRR+ +QE IR   +
Sbjct: 11  KAVILGLLTPRADKEPRRLARELLLLPQLPCGIKEGLHLRSHTSVPRREPEQEPIRTSQV 70

Query: 73  L-HGNHRHAIILHRNSHLFQRFQRQSLRHLKQNTFDAVNRIDSFLHPLGQEIDVTVH 129
               +H   I+L R  HL +   R+ LRH  Q   D V+ + S LHP GQ + V VH
Sbjct: 71  PGRPDHGDRIVLGRRPHLVEDIVRKRLRHPVQYGLDTVHAVGSHLHPAGQALHVAVH 127

[Close]
BLAST of Cmc11g0290021 vs. NCBI nr
Match: ETO80384.1 (hypothetical protein F444_05107, partial [Phytophthora parasitica P1976])

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-04
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 0 

Query: 13  RRLLAAALSSRTDKESGGNSGQSLILTKNNCRIKKRFHLCRHRSVPRRKSKQESIRLHHL 72
           RRLLAAALS+R +K++G  + QS    +   R+++   L   R+  R +++Q+++RL   
Sbjct: 26  RRLLAAALSTRAEKDAGRLAHQSTSSPQATGRVEEGLDLRWQRAEARGEAEQDAVRLLQG 85

Query: 73  LHGNHRHAIILHRNSHLFQRFQRQSLRHLKQNTFDAVNRIDSFLHPLGQEIDVTVHGVID 132
           +H      ++L    HL Q    + L HL      AV+  D+ L  LG+  DV + GV+D
Sbjct: 86  VHSGD-GVVLLGGGVHLAQDLVGERLLHLVDLGSHAVDGFDALLGSLGELGDVAIGGVVD 145

Query: 133 DED 136
           D D
Sbjct: 146 DSD 147

[Close]
BLAST of Cmc11g0290021 vs. ExPASy TrEMBL
Match: A0A5A7RHP5 (DNA-directed RNA polymerase subunit beta OS=Striga asiatica OX=4170 GN=STAS_34403 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0 

Query: 13  RRLLAAALSSRTDKESGGNSGQSLILTKNNCRIKKRFHLCRHRSVPRRKSKQESIRLHHL 72
           + ++   L+ R DKE    + + L+L +  C IK+  HL  H SVPRR+ +QE IR   +
Sbjct: 11  KAVILGLLTPRADKEPRRLARELLLLPQLPCGIKEGLHLRSHTSVPRREPEQEPIRTSQV 70

Query: 73  L-HGNHRHAIILHRNSHLFQRFQRQSLRHLKQNTFDAVNRIDSFLHPLGQEIDVTVH 129
               +H   I+L R  HL +   R+ LRH  Q   D V+ + S LHP GQ + V VH
Sbjct: 71  PGRPDHGDRIVLGRRPHLVEDIVRKRLRHPVQYGLDTVHAVGSHLHPAGQALHVAVH 127

[Close]
BLAST of Cmc11g0290021 vs. ExPASy TrEMBL
Match: A0A081ANC3 (Uncharacterized protein (Fragment) OS=Phytophthora parasitica P1976 OX=1317066 GN=F444_05107 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 0 

Query: 13  RRLLAAALSSRTDKESGGNSGQSLILTKNNCRIKKRFHLCRHRSVPRRKSKQESIRLHHL 72
           RRLLAAALS+R +K++G  + QS    +   R+++   L   R+  R +++Q+++RL   
Sbjct: 26  RRLLAAALSTRAEKDAGRLAHQSTSSPQATGRVEEGLDLRWQRAEARGEAEQDAVRLLQG 85

Query: 73  LHGNHRHAIILHRNSHLFQRFQRQSLRHLKQNTFDAVNRIDSFLHPLGQEIDVTVHGVID 132
           +H      ++L    HL Q    + L HL      AV+  D+ L  LG+  DV + GV+D
Sbjct: 86  VHSGD-GVVLLGGGVHLAQDLVGERLLHLVDLGSHAVDGFDALLGSLGELGDVAIGGVVD 145

Query: 133 DED 136
           D D
Sbjct: 146 DSD 147

The following BLAST results are available for this feature:
BLAST of Cmc11g0290021 vs. NCBI nr
Match NameE-valueIdentityDescription
GER56671.11.5e-0737.61DNA-directed RNA polymerase subunit beta' [Striga asiatica][more]
ETO80384.17.9e-0434.15hypothetical protein F444_05107, partial [Phytophthora parasitica P1976][more]
BLAST of Cmc11g0290021 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0290021 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7RHP57.4e-0837.61DNA-directed RNA polymerase subunit beta OS=Striga asiatica OX=4170 GN=STAS_3440... [more]
A0A081ANC33.8e-0434.15Uncharacterized protein (Fragment) OS=Phytophthora parasitica P1976 OX=1317066 G... [more]
BLAST of Cmc11g0290021 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0290021.1Cmc11g0290021.1mRNA