Cmc11g0289351 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0289351
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransposable element protein
LocationCMiso1.1chr11: 3895801 .. 3896420 (-)
RNA-Seq ExpressionCmc11g0289351
SyntenyCmc11g0289351
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGATGAACTTAATTCACTTTACAAGAATGATACTTGGAAACTAGTAGAAAAGCCACATGGAAAAAGTATGATTCCTTGTAAATGGGTCTTCAAGAAGAAGATGATTGGTGATTTGAATGACAAAGCAAAATTTAAGAAAAGACTAGTAGCTAAAGGCTTCAAGCAAAAGGAGGGTGTAGACTATAATGAGAGTTTTTCCCCTGTTATGAAGCACACTTCTATAAAAATCCTACTGGCTTAGTAGCATGTGAAAATCTTGAGCTGGAGCAGCTAGATGTTACTACTGCTTTCCTATATGGAAGCTTAGAGGAAGAAATCTTCATGGAGCAGCCTAAGGATTTTGAAGTAAAAGGCAAAAAGGAGTTGGTGTGTAAACTAAAAAGATCTTTATATGGCCTAAAACAGTCTCCAAGGTGTTGGTACAAACGTTTTGATGACTATATCAGCCTTATAAGATTTATTAGAAGTTTATATGACCCATGTGTCTACTACAAGAAGCTCACTGAAGGTTATTACATCTATCTTTTACTCTATGTTGATAATATGTTACTAGCAGGGAGAAATTCAATCAAGTTAAAAGAAATCAAAGCTCAACTCAGTGTTGAATTGATATGA

mRNA sequence

ATGAATGATGAACTTAATTCACTTTACAAGAATGATACTTGGAAACTAGTAGAAAAGCCACATGGAAAAAGTATGATTCCTTGTAAATGGGTCTTCAAGAAGAAGATGATTGGTGATTTGAATGACAAAGCAAAATTTAAGAAAAGACTAGTAGCTAAAGGCTTCAAGCAAAAGGAGGGTGTAGACTATAATGAGAGTTTTTCCCCTCTAGATGTTACTACTGCTTTCCTATATGGAAGCTTAGAGGAAGAAATCTTCATGGAGCAGCCTAAGGATTTTGAAGTAAAAGGCAAAAAGGAGTTGGTGTGTAAACTAAAAAGATCTTTATATGGCCTAAAACAGTCTCCAAGGTGTTGGTACAAACGTTTTGATGACTATATCAGCCTTATAAGATTTATTAGAAGTTTATATGACCCATGTGTCTACTACAAGAAGCTCACTGAAGGTTATTACATCTATCTTTTACTCTATGTTGATAATATGTTACTAGCAGGGAGAAATTCAATCAAGTTAAAAGAAATCAAAGCTCAACTCAGTGTTGAATTGATATGA

Coding sequence (CDS)

ATGAATGATGAACTTAATTCACTTTACAAGAATGATACTTGGAAACTAGTAGAAAAGCCACATGGAAAAAGTATGATTCCTTGTAAATGGGTCTTCAAGAAGAAGATGATTGGTGATTTGAATGACAAAGCAAAATTTAAGAAAAGACTAGTAGCTAAAGGCTTCAAGCAAAAGGAGGGTGTAGACTATAATGAGAGTTTTTCCCCTCTAGATGTTACTACTGCTTTCCTATATGGAAGCTTAGAGGAAGAAATCTTCATGGAGCAGCCTAAGGATTTTGAAGTAAAAGGCAAAAAGGAGTTGGTGTGTAAACTAAAAAGATCTTTATATGGCCTAAAACAGTCTCCAAGGTGTTGGTACAAACGTTTTGATGACTATATCAGCCTTATAAGATTTATTAGAAGTTTATATGACCCATGTGTCTACTACAAGAAGCTCACTGAAGGTTATTACATCTATCTTTTACTCTATGTTGATAATATGTTACTAGCAGGGAGAAATTCAATCAAGTTAAAAGAAATCAAAGCTCAACTCAGTGTTGAATTGATATGA

Protein sequence

MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEGVDYNESFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKEIKAQLSVELI
Homology
BLAST of Cmc11g0289351 vs. NCBI nr
Match: KAA0054988.1 (hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 6.1e-62
Identity = 136/204 (66.67%), Postives = 142/204 (69.61%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           MNDELNSLYKNDTW+LVEKPH KS+IPCKWVFKKKMI DLNDK K K RLVAKGFKQKEG
Sbjct: 576 MNDELNSLYKNDTWELVEKPHKKSIIPCKWVFKKKMIDDLNDKVKIKARLVAKGFKQKEG 635

Query: 61  VDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKG 120
           VDYNE FSP                       LDVTTAFL+GSLEEEIFMEQPK FEVKG
Sbjct: 636 VDYNEIFSPVVKHTCIRILLTIVACENLKLEQLDVTTAFLHGSLEEEIFMEQPKGFEVKG 695

Query: 121 KKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLY 180
           KKELVCKL                            RSLYDPCVYYKKLTEG YIY+LLY
Sbjct: 696 KKELVCKLN---------------------------RSLYDPCVYYKKLTEGDYIYILLY 752

Query: 181 VDNMLLAGRNSIKLKEIKAQLSVE 182
           VD+MLLAGR+  KLKEIKAQLS E
Sbjct: 756 VDDMLLAGRDPTKLKEIKAQLSAE 752

BLAST of Cmc11g0289351 vs. NCBI nr
Match: KAA0047818.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 6.1e-62
Identity = 125/203 (61.58%), Postives = 149/203 (73.40%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           + +E+NSL+KN+T +   +P  K +IP KWV+KKK +G+ N+K KFK RLVAKGFKQKEG
Sbjct: 113 IKNEINSLHKNETLEFTGRPLNKGIIPSKWVYKKKFLGEKNEKVKFKVRLVAKGFKQKEG 172

Query: 61  VDYNESFSP----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKGK 120
            DY E FSP                      +DVT AFL+GSLEE+++MEQPK FE KGK
Sbjct: 173 ADYTEIFSPVVSTSIRVLLTIVTCEDLKLEQMDVTIAFLHGSLEEDLYMEQPKGFEAKGK 232

Query: 121 KELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYV 180
            +LVCKLK+SLYGLKQSPRCW KRFDD+I+ I F+RSLYDPCVYYKKLT G  IYLLLYV
Sbjct: 233 IDLVCKLKKSLYGLKQSPRCWNKRFDDFINKIGFMRSLYDPCVYYKKLTNGSLIYLLLYV 292

Query: 181 DNMLLAGRNSIKLKEIKAQLSVE 182
           D+MLLAG+N  KL EIK QL  E
Sbjct: 293 DDMLLAGKNLTKLNEIKEQLKNE 315

BLAST of Cmc11g0289351 vs. NCBI nr
Match: TYK02789.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 7.7e-57
Identity = 121/201 (60.20%), Postives = 143/201 (71.14%), Query Frame = 0

Query: 6   NSLYKND--TWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEGVDY 65
           + LY N   TW+L ++P  K +IP K V+KKK +G+ N+K KFK RLVAKGFKQKEGV Y
Sbjct: 117 DELYMNSETTWELTDRPLNKGVIPWKRVYKKKFLGEKNEKVKFKTRLVAKGFKQKEGVGY 176

Query: 66  NESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKGKKE 125
            + FSP                       +DVTT FL+GSLEE+++MEQ K FE KGK +
Sbjct: 177 TKFFSPVVKHTSIRVLLSIVACEDLELEQMDVTTTFLHGSLEEDLYMEQHKGFEAKGKTD 236

Query: 126 LVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDN 182
           LVCKLK+SLYGLKQSPRCWYKRFD +I+ I F+RSLYDP VYYKKLT+G  IYLLLYVDN
Sbjct: 237 LVCKLKKSLYGLKQSPRCWYKRFDVFINKIGFMRSLYDPLVYYKKLTDGSLIYLLLYVDN 296

BLAST of Cmc11g0289351 vs. NCBI nr
Match: BBH00108.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52
Identity = 104/184 (56.52%), Postives = 140/184 (76.09%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           M++E+ SL+KN+TW+LV+ P GK  I CKWV+ KKM     D  +FK RLVAKG+ QKEG
Sbjct: 299 MDEEMKSLHKNETWELVQLPKGKKAIGCKWVYAKKMESLGKDNVRFKARLVAKGYAQKEG 358

Query: 61  VDYNE---SFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPR 120
           +DYNE     + LDV TAFL+G LEEEI+M QP+ F+V GK+  VCKL++SLYGLKQSPR
Sbjct: 359 IDYNEFDLELAQLDVKTAFLHGDLEEEIYMSQPEGFKVAGKENWVCKLQKSLYGLKQSPR 418

Query: 121 CWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKEIKAQ 180
            WYKRFD ++   ++ RS YD CVY++KL +G +IYLLLYVD+ML+A ++ ++++ +K Q
Sbjct: 419 QWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLLLYVDDMLIACKSKVEIERLKTQ 478

Query: 181 LSVE 182
           LS E
Sbjct: 479 LSNE 482

BLAST of Cmc11g0289351 vs. NCBI nr
Match: BBG99268.1 (transposable element gene [Prunus dulcis])

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52
Identity = 104/184 (56.52%), Postives = 140/184 (76.09%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
            M++E+ SL+KN+TW+LV+ P GK  I CKWV+ KKM     D  +FK RLVAKG+ QKEG
Sbjct: 828  MDEEMKSLHKNETWELVQLPKGKKAIGCKWVYAKKMESLGKDNVRFKARLVAKGYAQKEG 887

Query: 61   VDYNE---SFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPR 120
            +DYNE     + LDV TAFL+G LEEEI+M QP+ F+V GK+  VCKL++SLYGLKQSPR
Sbjct: 888  IDYNEFDLELAQLDVKTAFLHGDLEEEIYMSQPEGFKVAGKENWVCKLQKSLYGLKQSPR 947

Query: 121  CWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKEIKAQ 180
             WYKRFD ++   ++ RS YD CVY++KL +G +IYLLLYVD+ML+A ++ ++++ +K Q
Sbjct: 948  QWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLLLYVDDMLIACKSKVEIERLKTQ 1007

Query: 181  LSVE 182
            LS E
Sbjct: 1008 LSNE 1011

BLAST of Cmc11g0289351 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
            M +E+ SL KN T+KLVE P GK  + CKWVFK K  GD     ++K RLV KGF+QK+G
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCK-LVRYKARLVVKGFEQKKG 889

Query: 61   VDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKG 120
            +D++E FSP                       LDV TAFL+G LEEEI+MEQP+ FEV G
Sbjct: 890  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 949

Query: 121  KKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLY 180
            KK +VCKL +SLYGLKQ+PR WY +FD ++    ++++  DPCVY+K+ +E  +I LLLY
Sbjct: 950  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLY 1009

BLAST of Cmc11g0289351 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-30
Identity = 72/203 (35.47%), Postives = 112/203 (55.17%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLV-EKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKE 60
            M  E+N+   N TW LV   P   +++ C+W+F KK   D     ++K RLVAKG+ Q+ 
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSD-GSLNRYKARLVAKGYNQRP 1014

Query: 61   GVDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVK 120
            G+DY E+FSP                       LDV  AFL G+L +E++M QP  F  K
Sbjct: 1015 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDK 1074

Query: 121  GKKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLL 180
             + + VC+L++++YGLKQ+PR WY     Y+  + F+ S+ D  ++  +      IY+L+
Sbjct: 1075 DRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRS-IIYMLV 1134

BLAST of Cmc11g0289351 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.2e-29
Identity = 72/203 (35.47%), Postives = 110/203 (54.19%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLVEKPHGK-SMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKE 60
            M  E+N+   N TW LV  P    +++ C+W+F KK   D     ++K RLVAKG+ Q+ 
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSD-GSLNRYKARLVAKGYNQRP 1031

Query: 61   GVDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVK 120
            G+DY E+FSP                       LDV  AFL G+L ++++M QP  F  K
Sbjct: 1032 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1091

Query: 121  GKKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLL 180
             +   VCKL+++LYGLKQ+PR WY    +Y+  I F+ S+ D  ++  +  +   +Y+L+
Sbjct: 1092 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKS-IVYMLV 1151

BLAST of Cmc11g0289351 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-28
Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
            +N ELN+   N+TW + ++P  K+++  +WVF  K   +L +  ++K RLVA+GF QK  
Sbjct: 910  INTELNAHKINNTWTITKRPENKNIVDSRWVFSVK-YNELGNPIRYKARLVARGFTQKYQ 969

Query: 61   VDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKG 120
            +DY E+F+P                       +DV TAFL G+L+EEI+M  P+   +  
Sbjct: 970  IDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISC 1029

Query: 121  KKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVY-YKKLTEGYYIYLLL 179
              + VCKL +++YGLKQ+ RCW++ F+  +    F+ S  D C+Y   K      IY+LL
Sbjct: 1030 NSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLL 1089

BLAST of Cmc11g0289351 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 51/171 (29.82%), Postives = 78/171 (45.61%), Query Frame = 0

Query: 25   MIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQK---------EGVDYNE---------- 84
            ++P   +F KK  G       +K R+V +G  Q          E +++N           
Sbjct: 1321 IVPTNTIFTKKRNG------IYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMIANN 1380

Query: 85   ---SFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPRCWYKR 144
                   LD+  AFLY  LEEEI++  P D      +  V KL ++LYGLKQSP+ W   
Sbjct: 1381 RNMFMKTLDINHAFLYAKLEEEIYIPHPHD------RRCVVKLNKALYGLKQSPKEWNDH 1440

Query: 145  FDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKE 174
               Y++ I    + Y P +Y    TE   + + +YVD+ ++A  N  +L E
Sbjct: 1441 LRQYLNGIGLKDNSYTPGLYQ---TEDKNLMIAVYVDDCVIAASNEQRLDE 1476

BLAST of Cmc11g0289351 vs. ExPASy TrEMBL
Match: A0A5A7TXZ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00700 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.9e-62
Identity = 125/203 (61.58%), Postives = 149/203 (73.40%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           + +E+NSL+KN+T +   +P  K +IP KWV+KKK +G+ N+K KFK RLVAKGFKQKEG
Sbjct: 113 IKNEINSLHKNETLEFTGRPLNKGIIPSKWVYKKKFLGEKNEKVKFKVRLVAKGFKQKEG 172

Query: 61  VDYNESFSP----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKGK 120
            DY E FSP                      +DVT AFL+GSLEE+++MEQPK FE KGK
Sbjct: 173 ADYTEIFSPVVSTSIRVLLTIVTCEDLKLEQMDVTIAFLHGSLEEDLYMEQPKGFEAKGK 232

Query: 121 KELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYV 180
            +LVCKLK+SLYGLKQSPRCW KRFDD+I+ I F+RSLYDPCVYYKKLT G  IYLLLYV
Sbjct: 233 IDLVCKLKKSLYGLKQSPRCWNKRFDDFINKIGFMRSLYDPCVYYKKLTNGSLIYLLLYV 292

Query: 181 DNMLLAGRNSIKLKEIKAQLSVE 182
           D+MLLAG+N  KL EIK QL  E
Sbjct: 293 DDMLLAGKNLTKLNEIKEQLKNE 315

BLAST of Cmc11g0289351 vs. ExPASy TrEMBL
Match: A0A5A7UJ23 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001360 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.9e-62
Identity = 136/204 (66.67%), Postives = 142/204 (69.61%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           MNDELNSLYKNDTW+LVEKPH KS+IPCKWVFKKKMI DLNDK K K RLVAKGFKQKEG
Sbjct: 576 MNDELNSLYKNDTWELVEKPHKKSIIPCKWVFKKKMIDDLNDKVKIKARLVAKGFKQKEG 635

Query: 61  VDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKG 120
           VDYNE FSP                       LDVTTAFL+GSLEEEIFMEQPK FEVKG
Sbjct: 636 VDYNEIFSPVVKHTCIRILLTIVACENLKLEQLDVTTAFLHGSLEEEIFMEQPKGFEVKG 695

Query: 121 KKELVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLY 180
           KKELVCKL                            RSLYDPCVYYKKLTEG YIY+LLY
Sbjct: 696 KKELVCKLN---------------------------RSLYDPCVYYKKLTEGDYIYILLY 752

Query: 181 VDNMLLAGRNSIKLKEIKAQLSVE 182
           VD+MLLAGR+  KLKEIKAQLS E
Sbjct: 756 VDDMLLAGRDPTKLKEIKAQLSAE 752

BLAST of Cmc11g0289351 vs. ExPASy TrEMBL
Match: A0A5D3BXB7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00480 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.7e-57
Identity = 121/201 (60.20%), Postives = 143/201 (71.14%), Query Frame = 0

Query: 6   NSLYKND--TWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEGVDY 65
           + LY N   TW+L ++P  K +IP K V+KKK +G+ N+K KFK RLVAKGFKQKEGV Y
Sbjct: 117 DELYMNSETTWELTDRPLNKGVIPWKRVYKKKFLGEKNEKVKFKTRLVAKGFKQKEGVGY 176

Query: 66  NESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKGKKE 125
            + FSP                       +DVTT FL+GSLEE+++MEQ K FE KGK +
Sbjct: 177 TKFFSPVVKHTSIRVLLSIVACEDLELEQMDVTTTFLHGSLEEDLYMEQHKGFEAKGKTD 236

Query: 126 LVCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDN 182
           LVCKLK+SLYGLKQSPRCWYKRFD +I+ I F+RSLYDP VYYKKLT+G  IYLLLYVDN
Sbjct: 237 LVCKLKKSLYGLKQSPRCWYKRFDVFINKIGFMRSLYDPLVYYKKLTDGSLIYLLLYVDN 296

BLAST of Cmc11g0289351 vs. ExPASy TrEMBL
Match: A0A4Y1R569 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_008898 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 104/184 (56.52%), Postives = 140/184 (76.09%), Query Frame = 0

Query: 1    MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
            M++E+ SL+KN+TW+LV+ P GK  I CKWV+ KKM     D  +FK RLVAKG+ QKEG
Sbjct: 828  MDEEMKSLHKNETWELVQLPKGKKAIGCKWVYAKKMESLGKDNVRFKARLVAKGYAQKEG 887

Query: 61   VDYNE---SFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPR 120
            +DYNE     + LDV TAFL+G LEEEI+M QP+ F+V GK+  VCKL++SLYGLKQSPR
Sbjct: 888  IDYNEFDLELAQLDVKTAFLHGDLEEEIYMSQPEGFKVAGKENWVCKLQKSLYGLKQSPR 947

Query: 121  CWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKEIKAQ 180
             WYKRFD ++   ++ RS YD CVY++KL +G +IYLLLYVD+ML+A ++ ++++ +K Q
Sbjct: 948  QWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLLLYVDDMLIACKSKVEIERLKTQ 1007

Query: 181  LSVE 182
            LS E
Sbjct: 1008 LSNE 1011

BLAST of Cmc11g0289351 vs. ExPASy TrEMBL
Match: A0A4Y1R8B3 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_010022 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 104/184 (56.52%), Postives = 140/184 (76.09%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           M++E+ SL+KN+TW+LV+ P GK  I CKWV+ KKM     D  +FK RLVAKG+ QKEG
Sbjct: 299 MDEEMKSLHKNETWELVQLPKGKKAIGCKWVYAKKMESLGKDNVRFKARLVAKGYAQKEG 358

Query: 61  VDYNE---SFSPLDVTTAFLYGSLEEEIFMEQPKDFEVKGKKELVCKLKRSLYGLKQSPR 120
           +DYNE     + LDV TAFL+G LEEEI+M QP+ F+V GK+  VCKL++SLYGLKQSPR
Sbjct: 359 IDYNEFDLELAQLDVKTAFLHGDLEEEIYMSQPEGFKVAGKENWVCKLQKSLYGLKQSPR 418

Query: 121 CWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIYLLLYVDNMLLAGRNSIKLKEIKAQ 180
            WYKRFD ++   ++ RS YD CVY++KL +G +IYLLLYVD+ML+A ++ ++++ +K Q
Sbjct: 419 QWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLLLYVDDMLIACKSKVEIERLKTQ 478

Query: 181 LSVE 182
           LS E
Sbjct: 479 LSNE 482

BLAST of Cmc11g0289351 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 122.5 bits (306), Expect = 3.6e-28
Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           M+DE+ ++    TW++   P  K  I CKWV+K K   D     ++K RLVAKG+ Q+EG
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD-GTIERYKARLVAKGYTQQEG 161

Query: 61  VDYNESFSP-----------------------LDVTTAFLYGSLEEEIFMEQPKDFEVKG 120
           +D+ E+FSP                       LD++ AFL G L+EEI+M+ P  +  + 
Sbjct: 162 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 221

Query: 121 KKEL----VCKLKRSLYGLKQSPRCWYKRFDDYISLIRFIRSLYDPCVYYKKLTEGYYIY 179
              L    VC LK+S+YGLKQ+ R W+ +F   +    F++S  D   Y+ K+T   ++ 
Sbjct: 222 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDH-TYFLKITATLFLC 281

BLAST of Cmc11g0289351 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1   MNDELNSLYKNDTWKLVEKPHGKSMIPCKWVFKKKMIGDLNDKAKFKKRLVAKGFKQKEG 60
           M +EL++L +N TW LV  P  ++++ CKWVFK K+  D     + K RLVAKGF Q+EG
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD-GTLDRLKARLVAKGFHQEEG 103

Query: 61  VDYNESFSPL 71
           + + E++SP+
Sbjct: 104 IYFVETYSPV 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054988.16.1e-6266.67hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa][more]
KAA0047818.16.1e-6261.58retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK02789.17.7e-5760.20retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BBH00108.13.3e-5256.52transposable element gene [Prunus dulcis][more]
BBG99268.13.3e-5256.52transposable element gene [Prunus dulcis][more]
Match NameE-valueIdentityDescription
P109781.8e-4848.51Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT946.4e-3035.47Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW29.2e-2935.47Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P041463.5e-2834.65Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0C2J73.3e-1029.82Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5A7TXZ92.9e-6261.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UJ232.9e-6266.67Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BXB73.7e-5760.20Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A4Y1R5691.6e-5256.52Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_008898 PE=4 SV=1[more]
A0A4Y1R8B31.6e-5256.52Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_010022 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.13.6e-2834.63cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.14.0e-1145.71Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 70..180
e-value: 3.9E-26
score: 92.1
coord: 11..69
e-value: 3.9E-14
score: 52.8
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 2..174
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 13..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0289351.1Cmc11g0289351.1mRNA