Cmc11g0288651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0288651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr11: 3146043 .. 3146504 (-)
RNA-Seq Expression	Cmc11g0288651
Synteny	Cmc11g0288651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGTTCGTCATAGTTTTCATTGACGATATTTTGGTTTACTCCAAAACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCAAAGTGTGAGTTATGGCTGAAGAAGGTATCCTTCTTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATCGAAGCAGTTACTAGTTGGCCTCGACCATCGACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCATAGAAGACTTCTCTCGTATAGCCAGTCTCTTGACTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGTGTAGCTTCTAG

mRNA sequence

ATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGTTCGTCATAGTTTTCATTGACGATATTTTGGTTTACTCCAAAACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCAAAGTGTGAGTTATGGCTGAAGAAGGTATCCTTCTTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATCGAAGCAGTTACTAGTTGGCCTCGACCATCGACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCATAGAAGACTTCTCTCGTATAGCCAGTCTCTTGACTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGTGTAGCTTCTAG

Coding sequence (CDS)

ATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGTTCGTCATAGTTTTCATTGACGATATTTTGGTTTACTCCAAAACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGAGCCAATAAGCTGTATGCCAAGTTCTCAAAGTGTGAGTTATGGCTGAAGAAGGTATCCTTCTTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATCGAAGCAGTTACTAGTTGGCCTCGACCATCGACAGTTAGCGAGATTCATAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCATAGAAGACTTCTCTCGTATAGCCAGTCTCTTGACTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGTGTAGCTTCTAG

Protein sequence

MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANKLYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYRRFIEDFSRIASLLTQLTRKGTPFVWSPACECSF

Homology

[Close]

BLAST of Cmc11g0288651 vs. NCBI nr
Match: KAA0045652.1 (pol protein [Cucumis melo var. makuwa] >TYK02609.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 3.0e-78
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEA+HEEHLHQVLETLRANK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAQHEEHLHQVLETLRANK 247

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LY KFSKCE WLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHS LGL GYYR
Sbjct: 248 LYVKFSKCEFWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSLLGLTGYYR 307

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIASLLTQLTRKGTPFVWSPACECSF
Sbjct: 308 RFMEDFSRIASLLTQLTRKGTPFVWSPACECSF 340

[Close]

BLAST of Cmc11g0288651 vs. NCBI nr
Match: KAA0037906.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.3e-77
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 670 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 729

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 730 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 789

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+E FSRIASLLTQLTRKGTPFVWSPACECSF
Sbjct: 790 RFVEGFSRIASLLTQLTRKGTPFVWSPACECSF 822

[Close]

BLAST of Cmc11g0288651 vs. NCBI nr
Match: KAA0039594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 8.0e-76
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 600 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WLKKV+F GHVVSSEGVSV+PAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 660 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIASLLTQLTRKGTPFVWSPACE SF
Sbjct: 720 RFVEDFSRIASLLTQLTRKGTPFVWSPACESSF 752

[Close]

BLAST of Cmc11g0288651 vs. NCBI nr
Match: KAA0045309.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           +SFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 251 ISFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+ED SRIAS LTQLTRKGTPFVWSPACECSF
Sbjct: 371 RFVEDLSRIASPLTQLTRKGTPFVWSPACECSF 403

[Close]

BLAST of Cmc11g0288651 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIAS LTQLTRKGTPFVWSPACE SF
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 673

[Close]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 54/141 (38.30%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           L  +  KCE   K+ +F GH+V+ +G+  +P K++A+ S+P P+   EI +FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRIASLLTQLTRKGT 142
           +FI +++ IA  +T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+V+S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           L  +  KCE   ++ +F GHV++ +G+  +P KIEA+  +P P+   EI +FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRIASLLTQLTRK 140
           +FI +F+ IA  +T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.7e-24
Identity = 50/138 (36.23%), Postives = 86/138 (62.32%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           + FGL NAPA+F  +++ + ++ +     V+IDDI+V+S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           L     K      +V F G++V+++G+  DP K+ A++  P P++V E+  FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRIASLLTQLTR 139
           +FI+D++++A  LT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-21
Identity = 46/138 (33.33%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           + FGL NA ++F   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           +     K   + + V + G +VS +G   DP K++A+  +P P  V ++ SFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFSRIASLLTQLTR 139
            FI+DF+ IA  +T + +
Sbjct: 429 VFIKDFAAIARPITDILK 446

[Close]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-21
Identity = 49/147 (33.33%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           M +G++ APA F   +N +  +  +S V+ ++DDIL++SK+E+EH +H+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           L    +KCE    +V F G+ +S +G +     I+ V  W +P    E+  FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSP 148
           +FI   S++   L  L +K   + W+P
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL
Match: A0A5A7TQK5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00140 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEA+HEEHLHQVLETLRANK
Sbjct: 188 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAQHEEHLHQVLETLRANK 247

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LY KFSKCE WLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHS LGL GYYR
Sbjct: 248 LYVKFSKCEFWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSLLGLTGYYR 307

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIASLLTQLTRKGTPFVWSPACECSF
Sbjct: 308 RFMEDFSRIASLLTQLTRKGTPFVWSPACECSF 340

[Close]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL
Match: A0A5A7T6U3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00780 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 670 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 729

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 730 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 789

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+E FSRIASLLTQLTRKGTPFVWSPACECSF
Sbjct: 790 RFVEGFSRIASLLTQLTRKGTPFVWSPACECSF 822

[Close]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL
Match: A0A5A7T804 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00700 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.9e-76
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 600 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WLKKV+F GHVVSSEGVSV+PAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 660 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIASLLTQLTRKGTPFVWSPACE SF
Sbjct: 720 RFVEDFSRIASLLTQLTRKGTPFVWSPACESSF 752

[Close]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL
Match: A0A5A7TVN9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00750 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.1e-76
Identity = 142/153 (92.81%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           +SFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 251 ISFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+ED SRIAS LTQLTRKGTPFVWSPACECSF
Sbjct: 371 RFVEDLSRIASPLTQLTRKGTPFVWSPACECSF 403

[Close]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.1e-76
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILVYSKTEAEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIL+YSKTEAEHEEHLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCELWLKKVSFFGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEIHSFLGLAGYYR 120
           LYAKFSKCE WL+KV+F GHVVSSEGVSVDPAKIEAVT+WPRPSTVSEI SFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
           RF+EDFSRIAS LTQLTRKGTPFVWSPACE SF
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 837

[Close]

BLAST of Cmc11g0288651 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-19
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 48  HLHQVLETLRANKLYAKFSKCELWLKKVSFFG--HVVSSEGVSVDPAKIEAVTSWPRPST 107
           HL  VL+    ++ YA   KC     ++++ G  H++S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIHSFLGLAGYYRRFIEDFSRIASLLTQLTRKGTPFVWSPACECSF 154
            +E+  FLGL GYYRRF++++ +I   LT+L +K +   W+     +F
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAF 109

The following BLAST results are available for this feature:

BLAST of Cmc11g0288651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045652.1	3.0e-78	96.08	pol protein [Cucumis melo var. makuwa] >TYK02609.1 pol protein [Cucumis melo var...	[more]
KAA0037906.1	7.3e-77	94.12	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039594.1	8.0e-76	93.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0045309.1	1.1e-75	92.81	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	1.1e-75	93.46	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0288651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.0e-25	38.30	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.0e-25	41.01	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	9.7e-24	36.23	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	2.0e-21	33.33	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	5.9e-21	33.33	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0288651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQK5	1.4e-78	96.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00140 PE...	[more]
A0A5A7T6U3	3.5e-77	94.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7T804	3.9e-76	93.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]
A0A5A7TVN9	5.1e-76	92.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7V4E4	5.1e-76	93.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc11g0288651 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.9e-19	38.89	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 6.6E-15 score: 55.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.855118
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..153 e-value: 3.7E-22 score: 80.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 1.6E-33 score: 117.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..149
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..149
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 2.78301E-38 score: 126.556
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0288651.1	Cmc11g0288651.1	mRNA