Cmc11g0287951 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0287951
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr11: 2790161 .. 2790595 (+)
RNA-Seq Expression	Cmc11g0287951
Synteny	Cmc11g0287951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGGGCCGATTCCAAGGAATGTTAGGGAGCTTAGAGGATTTTTGGGGCTAACCGGCTACTACCGCCGATTTGTGGCCAATTATGGAACCATCGCCGCACCCCTAACTCGTTTGACAAAGAAGAACTTCCACTGGACGACGGAAACCACATTTGCGTTTGAACAACTGAAAACAGCTATGGTTACGCTACCAATTTTGGCCTTACCCGACTTCCAGCAGCCATTTGAGTTAGAGACCGATGCATCCGGATTCGGTTTGGGTGCAGTCCTTTCACAGAATAAAAGACTCATTGCCTACTTCAGCCAGAAATTGTCAGAAACGGTGAAGGAAAAATCCGTTTGTGAGAGAGAATTGATGGCCATTGTACTGGCCGTGGAAAAATGGCAACACTATTTATTAGGACATCACTTTGTGGTGTTCACTGATTAG

mRNA sequence

ATGCTGGAAGGGCCGATTCCAAGGAATGTTAGGGAGCTTAGAGGATTTTTGGGGCTAACCGGCTACTACCGCCGATTTGTGGCCAATTATGGAACCATCGCCGCACCCCTAACTCGTTTGACAAAGAAGAACTTCCACTGGACGACGGAAACCACATTTGCGTTTGAACAACTGAAAACAGCTATGGTTACGCTACCAATTTTGGCCTTACCCGACTTCCAGCAGCCATTTGAGTTAGAGACCGATGCATCCGGATTCGGTTTGGGTGCAGTCCTTTCACAGAATAAAAGACTCATTGCCTACTTCAGCCAGAAATTGTCAGAAACGGTGAAGGAAAAATCCGTTTGTGAGAGAGAATTGATGGCCATTGTACTGGCCGTGGAAAAATGGCAACACTATTTATTAGGACATCACTTTGTGGTGTTCACTGATTAG

Coding sequence (CDS)

ATGCTGGAAGGGCCGATTCCAAGGAATGTTAGGGAGCTTAGAGGATTTTTGGGGCTAACCGGCTACTACCGCCGATTTGTGGCCAATTATGGAACCATCGCCGCACCCCTAACTCGTTTGACAAAGAAGAACTTCCACTGGACGACGGAAACCACATTTGCGTTTGAACAACTGAAAACAGCTATGGTTACGCTACCAATTTTGGCCTTACCCGACTTCCAGCAGCCATTTGAGTTAGAGACCGATGCATCCGGATTCGGTTTGGGTGCAGTCCTTTCACAGAATAAAAGACTCATTGCCTACTTCAGCCAGAAATTGTCAGAAACGGTGAAGGAAAAATCCGTTTGTGAGAGAGAATTGATGGCCATTGTACTGGCCGTGGAAAAATGGCAACACTATTTATTAGGACATCACTTTGTGGTGTTCACTGATTAG

Protein sequence

MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNFHWTTETTFAFEQLKTAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERELMAIVLAVEKWQHYLLGHHFVVFTD

Homology

[Close]

BLAST of Cmc11g0287951 vs. NCBI nr
Match: KAA0057085.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 9.9e-68
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE PIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK NFHWTTETT AFEQLK
Sbjct: 267 MLEWPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNNFHWTTETTLAFEQLK 326

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
           TAMVTLP+LALPDFQQPFELETDASGFGLGAVLSQ+KR IAYFSQKL ETVKEKSV ERE
Sbjct: 327 TAMVTLPVLALPDFQQPFELETDASGFGLGAVLSQSKRPIAYFSQKLLETVKEKSVYERE 386

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE W+HYLLGHHFVVFTD
Sbjct: 387 LMAIVLAVENWRHYLLGHHFVVFTD 411

[Close]

BLAST of Cmc11g0287951 vs. NCBI nr
Match: KAA0056798.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.1e-64
Identity = 129/145 (88.97%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLK 60
           MLE PIPRN++ELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN FHWT E T AFEQLK
Sbjct: 276 MLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNSFHWTEEATSAFEQLK 335

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
           +AMVTLP+LALPDFQQ FELETDAS FGLGAVLSQNKR IAYFSQKLS T KEKSV ERE
Sbjct: 336 SAMVTLPVLALPDFQQQFELETDASRFGLGAVLSQNKRPIAYFSQKLSGTTKEKSVYERE 395

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVEKW+HYLLGHHFVVFTD
Sbjct: 396 LMAIVLAVEKWRHYLLGHHFVVFTD 420

[Close]

BLAST of Cmc11g0287951 vs. NCBI nr
Match: KAA0054256.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE P+P NVRELRGFLGLTGYYRRF+ANYG IA PLTRLTKK NFHW+ E T AFE LK
Sbjct: 262 MLEWPLPTNVRELRGFLGLTGYYRRFIANYGAIATPLTRLTKKNNFHWSKEATMAFETLK 321

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMVTLPILALPDFQQPFE+ETDASGFG+GAVLSQNKRLIAYFSQKLSET +EK V ERE
Sbjct: 322 KAMVTLPILALPDFQQPFEIETDASGFGVGAVLSQNKRLIAYFSQKLSETAREKLVYERE 381

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE+W+HYLLGH FVV+TD
Sbjct: 382 LMAIVLAVEQWRHYLLGHRFVVYTD 406

[Close]

BLAST of Cmc11g0287951 vs. NCBI nr
Match: TYK15012.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE P+P NVRELRGFLGLTGYYRRF+ANYG IA PLTRLTKK NFHW+ E T AFE LK
Sbjct: 367 MLEWPLPTNVRELRGFLGLTGYYRRFIANYGAIATPLTRLTKKNNFHWSKEATMAFETLK 426

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMVTLPILALPDFQQPFE+ETDASGFG+GAVLSQNKRLIAYFSQKLSET +EK V ERE
Sbjct: 427 KAMVTLPILALPDFQQPFEIETDASGFGVGAVLSQNKRLIAYFSQKLSETAREKLVYERE 486

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE+W+HYLLGH FVV+TD
Sbjct: 487 LMAIVLAVEQWRHYLLGHRFVVYTD 511

[Close]

BLAST of Cmc11g0287951 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 119/145 (82.07%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           M+E PIP+N+RELRGFLGLTGYYRRFVANYG IA PLT+LTKK NF W+ E T AFEQLK
Sbjct: 821 MIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNNFRWSEEATKAFEQLK 880

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMVTLP+LALPDFQ PFE+ETDASG GLGAVL+QNKR IAYFSQKLSET +EKSV ERE
Sbjct: 881 RAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQKLSETAREKSVYERE 940

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVEKW+HYLLGH FVV+TD
Sbjct: 941 LMAIVLAVEKWRHYLLGHRFVVYTD 965

[Close]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-29
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 5   PIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNFHWTT---ETTFAFEQLKTA 64
           PIP   +E+R FLGLTGYYR+F+ NY  IA P+T   KK     T   E   AFE+LK  
Sbjct: 433 PIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKAL 492

Query: 65  MVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERELM 124
           ++  PIL LPDF++ F L TDAS   LGAVLSQN   I++ S+ L++     S  E+EL+
Sbjct: 493 IIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELL 552

Query: 125 AIVLAVEKWQHYLLGHHFVVFTD 145
           AIV A + ++HYLLG  F++ +D
Sbjct: 553 AIVWATKTFRHYLLGRQFLIASD 575

[Close]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-28
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 5   PIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNFHWTT---ETTFAFEQLKTA 64
           PIP   +E++ FLGLTGYYR+F+ N+  IA P+T+  KKN    T   E   AF++LK  
Sbjct: 434 PIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYL 493

Query: 65  MVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERELM 124
           +   PIL +PDF + F L TDAS   LGAVLSQ+   ++Y S+ L+E     S  E+EL+
Sbjct: 494 ISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELL 553

Query: 125 AIVLAVEKWQHYLLGHHFVVFTD 145
           AIV A + ++HYLLG HF + +D
Sbjct: 554 AIVWATKTFRHYLLGRHFEISSD 576

[Close]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 61/160 (38.12%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 3   EGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNFH------------WTTE 62
           E P P +V+EL+ FLG+T YYR+F+ +Y  +A PLT LT+  +                E
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDE 407

Query: 63  TTF-AFEQLKTAMVTLPILALPDFQQPFELETDASGFGLGAVLSQN----KRLIAYFSQK 122
           T   +F  LK+ + +  ILA P F +PF L TDAS + +GAVLSQ+     R IAY S+ 
Sbjct: 408 TALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRS 467

Query: 123 LSETVKEKSVCERELMAIVLAVEKWQHYLLGHHFV-VFTD 145
           L++T +  +  E+E++AI+ +++  + YL G   + V+TD
Sbjct: 468 LNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTD 507

[Close]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-19
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLK 60
           M+  P P+N  ELRGFLGLTGYYRRFV NYG I  PLT L KKN   WT     AF+ LK
Sbjct: 54  MVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALK 113

Query: 61  TAMVTLPILALPDFQQPF 78
            A+ TLP+LALPD + PF
Sbjct: 114 GAVTTLPVLALPDLKLPF 131

[Close]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-19
Identity = 53/141 (37.59%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN--FHWTTETTFAFEQL 60
           +L+   P+N +ELR FLG   Y R+F+     +  PL  L KK+  + WT   T A E +
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 61  KTAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNK-----RLIAYFSQKLSETVKEK 120
           K  +V+ P+L   DF +   LETDAS   +GAVLSQ         + Y+S K+S+     
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 121 SVCERELMAIVLAVEKWQHYL 135
           SV ++E++AI+ +++ W+HYL
Sbjct: 750 SVSDKEMLAIIKSLKHWRHYL 770

[Close]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL
Match: A0A5A7UU61 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002760 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.8e-68
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE PIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK NFHWTTETT AFEQLK
Sbjct: 267 MLEWPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNNFHWTTETTLAFEQLK 326

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
           TAMVTLP+LALPDFQQPFELETDASGFGLGAVLSQ+KR IAYFSQKL ETVKEKSV ERE
Sbjct: 327 TAMVTLPVLALPDFQQPFELETDASGFGLGAVLSQSKRPIAYFSQKLLETVKEKSVYERE 386

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE W+HYLLGHHFVVFTD
Sbjct: 387 LMAIVLAVENWRHYLLGHHFVVFTD 411

[Close]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL
Match: A0A5A7UNX8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00450 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 129/145 (88.97%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLK 60
           MLE PIPRN++ELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN FHWT E T AFEQLK
Sbjct: 276 MLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNSFHWTEEATSAFEQLK 335

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
           +AMVTLP+LALPDFQQ FELETDAS FGLGAVLSQNKR IAYFSQKLS T KEKSV ERE
Sbjct: 336 SAMVTLPVLALPDFQQQFELETDASRFGLGAVLSQNKRPIAYFSQKLSGTTKEKSVYERE 395

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVEKW+HYLLGHHFVVFTD
Sbjct: 396 LMAIVLAVEKWRHYLLGHHFVVFTD 420

[Close]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL
Match: A0A5A7UJ06 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G002110 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE P+P NVRELRGFLGLTGYYRRF+ANYG IA PLTRLTKK NFHW+ E T AFE LK
Sbjct: 262 MLEWPLPTNVRELRGFLGLTGYYRRFIANYGAIATPLTRLTKKNNFHWSKEATMAFETLK 321

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMVTLPILALPDFQQPFE+ETDASGFG+GAVLSQNKRLIAYFSQKLSET +EK V ERE
Sbjct: 322 KAMVTLPILALPDFQQPFEIETDASGFGVGAVLSQNKRLIAYFSQKLSETAREKLVYERE 381

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE+W+HYLLGH FVV+TD
Sbjct: 382 LMAIVLAVEQWRHYLLGHRFVVYTD 406

[Close]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL
Match: A0A5D3CU83 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00460 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE P+P NVRELRGFLGLTGYYRRF+ANYG IA PLTRLTKK NFHW+ E T AFE LK
Sbjct: 367 MLEWPLPTNVRELRGFLGLTGYYRRFIANYGAIATPLTRLTKKNNFHWSKEATMAFETLK 426

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMVTLPILALPDFQQPFE+ETDASGFG+GAVLSQNKRLIAYFSQKLSET +EK V ERE
Sbjct: 427 KAMVTLPILALPDFQQPFEIETDASGFGVGAVLSQNKRLIAYFSQKLSETAREKLVYERE 486

Query: 121 LMAIVLAVEKWQHYLLGHHFVVFTD 145
           LMAIVLAVE+W+HYLLGH FVV+TD
Sbjct: 487 LMAIVLAVEQWRHYLLGHRFVVYTD 511

[Close]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL
Match: A0A5A7SNK3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00210 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.2e-60
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKK-NFHWTTETTFAFEQLK 60
           MLE P+P+NVRELRGFLGLTGYYRRFVANYG IA PLTRLTKK NFHW+ E T AFE LK
Sbjct: 348 MLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIATPLTRLTKKNNFHWSAEATVAFETLK 407

Query: 61  TAMVTLPILALPDFQQPFELETDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSVCERE 120
            AMV LP+LALPDFQQPFE+ETDASGFGLGAVLSQNKR IAYFSQKLSET +EKSV ERE
Sbjct: 408 KAMVILPVLALPDFQQPFEIETDASGFGLGAVLSQNKRPIAYFSQKLSETAREKSVYERE 467

Query: 121 LMAIVLAVEKWQHYLLGHHFVV 142
           LMAIVLAV+KW+HYLLGH FV+
Sbjct: 468 LMAIVLAVDKWRHYLLGHRFVL 489

[Close]

BLAST of Cmc11g0287951 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-20
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 1   MLEGPIPRNVRELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLK 60
           M+  P P+N  ELRGFLGLTGYYRRFV NYG I  PLT L KKN   WT     AF+ LK
Sbjct: 54  MVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALK 113

Query: 61  TAMVTLPILALPDFQQPF 78
            A+ TLP+LALPD + PF
Sbjct: 114 GAVTTLPVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc11g0287951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057085.1	9.9e-68	93.10	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056798.1	5.1e-64	88.97	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Tran...	[more]
KAA0054256.1	1.8e-61	84.14	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK15012.1	1.8e-61	84.14	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK21209.1	1.7e-59	82.07	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc11g0287951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	7.2e-29	48.25	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	6.1e-28	46.85	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.1e-20	38.13	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	3.0e-19	61.54	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9UR07	5.2e-19	37.59	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc11g0287951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UU61	4.8e-68	93.10	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UNX8	2.5e-64	88.97	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UJ06	8.8e-62	84.14	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3CU83	8.8e-62	84.14	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SNK3	8.2e-60	83.80	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Cmc11g0287951 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.2e-20	61.54	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..76 e-value: 1.5E-26 score: 94.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 47..141 e-value: 2.9E-34 score: 117.1
None	No IPR available	GENE3D	3.10.20.370		coord: 77..142 e-value: 6.8E-15 score: 56.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..143
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 5..143
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 78..144 e-value: 6.28056E-30 score: 102.956
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0287951.1	Cmc11g0287951.1	mRNA