Cmc11g0284471 (gene) Melon (Charmono) v1.1

Overview
NameCmc11g0284471
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionVesicle transport protein
LocationCMiso1.1chr11: 212018 .. 214587 (-)
RNA-Seq ExpressionCmc11g0284471
SyntenyCmc11g0284471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAATTTCTAACGATAGTCGGACACATAGTAACGGAGGCTTACCTCAAAATCTGTGTACGACTGCGGTGGACCCTGACGACGACGGGTTAACGGGTTGCTGGTGACAAGTTTTTGCTTCAATCAGCTCAAGTATCCATTTCGTACCTTCATTTGCCTTAGATCTCTCTCAATTTCACATCTTCTTCCCAGATTTTGAAGTGACGGCGGCCTTGTCATGGAGAAGATGAATCAGGCGTTTGAGAAAATGAAAATGTTAGTAGGAGTTGAGGTGGACGACGAACGTCAAGCTTCTACTGCTACCATTGATGACGGCAGCTCTTCATGGTTTATGGACGATTTCAATCGCAATTGCACGCTCTCTACAAAACAGGTTATTTTTCTTCCCCCCTGCGAATTTTGATTCTCCCGTTGCTGAATTTACTGCAGGAAAGTAACATTTTGATCTCTGTATTTGTCATTCTTTGTTTTATATGTATACCCCGTATCGCAACTTCGAATTATATTTGGCATTTTACTGATTATGATTTCTGAAAGATGGGCTAACACAACGAATTAGGATTATACTTTGAGAAGGAAAATGTTTTGAAGGATCAATATCATCATTATATATTTATTTTTGAAAAGGAAACTGACTCTTTTTATTGAAGGGGTGAAGAGAAGCTAAGGTTCAAAATACAAGACACCAAAATGAAATACAATGATAACAAAGTAGAACATAAAGTAACGAAGTTCAACAAGCAAATACAAAAAGCAACATAAACATTAAGTAGGAAAAATTTTGGCTTTCCAATTTAAGCACAGATCTTGGATGGAAATATCCGCAAAAGACTTAGAAAGAGTGCACCGGGTGGAAGATTAATCTGAACGATGACAAAATGGTCCATCCAAGAAAGAGATTCATTTATCATGAAAGACCCTCTAATTCTTTCAAACCAAATTTCAACAAACAAAGCTTTAACCACAATAGATCAAATCATCTAAGGGACTTCAAAGTTGGACCAGCCAAAATCTAAACCACACTTGCTTTAAACCCTTAATACCCAACAAATTTGAAGGAGAACAAATGCCACCAGCATAGTCTTAAAAAACAGCATCCAAACAAAAGGTGCTGCAAGTCTTTAAGGTCTGCCATACGCCCATACACAGGGGACATATAGAGGTAAACAAGCTTTGAGAAGGGAGCTTCCTTTAAATAATTGAAGAGCAATTCAATGAACCAAAAATCATTATCCATCTGAGAAAGGTTCTTTGACTTCCATAATGCTTTATAAATCAACTTATCCAAAGGATATGAGGTAGTCTAGTGCTCAGAAAGAGACTTTTAAGCCTTATTTTTTGTAATATGTTGGTTATTTTTGGCATTGTCTAACGATTCTTACATTTGTTTCTTGTACTTTGAGCATTAGCCTTTTTTCTTCGATTTTTTATAATTTCATTGAAGTGGTTTGTTTCCTTTTCAAAAAGAAAAAACCCTAGAAGCTTCCAAGGACCAGATATGCCGATCTGAACTCTAAACCACCCTTGTAGTCAAAATCAGGCTTAAAAGATTCTGATATGTGGATCTGAACTCTCAACTTACTTACATAATGTTGCTCTTCGTCTTCCTCCTTGAGATAAATTGAATCGCTTCAACTTATCCAACATCGTTTGAAGCTTATCAATAATCAGCTTTCAAAAAGAGACTTTCTTAGTATAACCACCTTGTGGAAGACCAAGATACATGAAAGAAAAGTGCTCAACTTTACATTACAATTTAGACGTATTGCAGTAGACAACAACCTTTCTTCTTCCACATTCACTCCGCACAAAGCAAAATTTTCCCACTCTACCTTCTGACCTGAGCACCATTCAAATATCTCAATAGTTTTTTTCAAGTTATTCAACATACCATCATCATACTTCCAGAAAATGAGAGTATCGTCAGGAAATTGAAGAATTGATTCATGAATTTTCTCTTTGCCTACTATGAAGCCTTCAAATATCCTTTTCTCATGTATTCTAGCAATAAGCATGCTCAACACGTCACTTTTGGTCTTCCCTTAATAAAAATTGAATATCTTTGGTTCCTAACACTATCATCCATGAGGTCCATCTCGTATCAAAGTTCTTACGAATCCAAATCTTCTCAAGAAAAATCCAATCAACTTTGTCAAAAGCTAAATCAAGTTTAAGGATCCATAAGAATCCATCTAGTAAAACAGACCTGAATTTTTCTTGTACTTTTCTGTTTGGTTTAGTTTGTGGAGTCACGAGTTAAGTATTTTTCTTTTGTCACACAGTTCTTTGTGGATCTAAGAAAGTTGAACTTCTATACACAATTGTCCTTTGGAAAATTCCACATTTGATCAGAAAACCTTTTTTTGTATTAGCTGTTTGTGCGAGGGCTGATGGCTGGATGTGAGGAAAAAACTTTGGACCAATTGATCCACAATCTGATTTTCTCAGCATATGCCAAATCGTCCCCTTTCCAATTTATCTTTCTGTATTCAAAGTTGAGTTTCTAATATTGTTCACCTATTGGAGACTATATCCTACTAATCCATCCCTCTCCCTTTCTCAATTTTACAG

mRNA sequence

TCAAATTTCTAACGATAGTCGGACACATAGTAACGGAGGCTTACCTCAAAATCTGTGTACGACTGCGGTGGACCCTGACGACGACGGGTTAACGGGTTGCTGATTTTGAAGTGACGGCGGCCTTGTCATGGAGAAGATGAATCAGGCGTTTGAGAAAATGAAAATGTTAGTAGGAGTTGAGGTGGACGACGAACGTCAAGCTTCTACTGCTACCATTGATGACGGCAGCTCTTCATGGTTTATGGACGATTTCAATCGCAATTGCACGCTCTCTACAAAACAGCTGTTTGTGCGAGGGCTGATGGCTGGATGTGAGGAAAAAACTTTGGACCAATTGATCCACAATCTGATTTTCTCAGCATATGCCAAATCGTCCCCTTTCCAATTTATCTTTCTGTATTCAAAGTTGAGTTTCTAATATTGTTCACCTATTGGAGACTATATCCTACTAATCCATCCCTCTCCCTTTCTCAATTTTACAG

Coding sequence (CDS)

ATGGAGAAGATGAATCAGGCGTTTGAGAAAATGAAAATGTTAGTAGGAGTTGAGGTGGACGACGAACGTCAAGCTTCTACTGCTACCATTGATGACGGCAGCTCTTCATGGTTTATGGACGATTTCAATCGCAATTGCACGCTCTCTACAAAACAGCTGTTTGTGCGAGGGCTGATGGCTGGATGTGAGGAAAAAACTTTGGACCAATTGATCCACAATCTGATTTTCTCAGCATATGCCAAATCGTCCCCTTTCCAATTTATCTTTCTGTATTCAAAGTTGAGTTTCTAA

Protein sequence

MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLFVRGLMAGCEEKTLDQLIHNLIFSAYAKSSPFQFIFLYSKLSF
Homology
[Close]
BLAST of Cmc11g0284471 vs. NCBI nr
Match: XP_008460845.1 (PREDICTED: vesicle transport protein SFT2B [Cucumis melo] >XP_008460846.1 PREDICTED: vesicle transport protein SFT2B [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 5.1e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. NCBI nr
Match: XP_038900581.1 (vesicle transport protein SFT2B [Benincasa hispida] >XP_038900582.1 vesicle transport protein SFT2B [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          MEKMNQAFEKMKMLVGVEVDDERQASTATIDDG+SSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGNSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. NCBI nr
Match: XP_004147336.1 (vesicle transport protein SFT2B [Cucumis sativus] >XP_011649441.1 vesicle transport protein SFT2B [Cucumis sativus] >KGN62229.1 hypothetical protein Csa_016944 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          MEKMNQAFEKMKMLVGVEVDDER+ASTATIDDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDEREASTATIDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. NCBI nr
Match: XP_022158451.1 (vesicle transport protein SFT2B [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          M+KMNQAFEKMKMLVGVE D+E QA+TAT+DDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MDKMNQAFEKMKMLVGVEADEEHQATTATMDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. NCBI nr
Match: XP_022932027.1 (vesicle transport protein SFT2B isoform X2 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-15
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQ 53
          MEKMNQAFEKMKMLVGVEVDDE  ASTATI+D +SSWFMDDFNRNCTLSTKQ
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDE--ASTATINDDNSSWFMDDFNRNCTLSTKQ 50

[Close]
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match: A0A1S3CDD0 (Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103499598 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match: A0A0A0LMG7 (Vesicle transport protein OS=Cucumis sativus OX=3659 GN=Csa_2G336760 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.5e-20
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          MEKMNQAFEKMKMLVGVEVDDER+ASTATIDDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDEREASTATIDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match: A0A6J1E0X7 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111024936 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.8e-18
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          M+KMNQAFEKMKMLVGVE D+E QA+TAT+DDGSSSWFMDDFNRNCTLSTKQ F
Sbjct: 1  MDKMNQAFEKMKMLVGVEADEEHQATTATMDDGSSSWFMDDFNRNCTLSTKQRF 54

[Close]
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match: A0A6J1IFS2 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111472372 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQ 53
          MEKMNQAFEKMKMLVGVEVDDE  ASTATI+D +SSWFMDDFNRNCTLSTKQ
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDE--ASTATINDDNSSWFMDDFNRNCTLSTKQ 50

[Close]
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match: A0A6J1IE99 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111472372 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQ 53
          MEKMNQAFEKMKMLVGVEVDDE  ASTATI+D +SSWFMDDFNRNCTLSTKQ
Sbjct: 1  MEKMNQAFEKMKMLVGVEVDDE--ASTATINDDNSSWFMDDFNRNCTLSTKQ 50

[Close]
BLAST of Cmc11g0284471 vs. TAIR 10
Match: AT5G23550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 1  MEKMNQAFEKMKMLVGVEVDDERQASTATIDDGSSSWFMDDFNRNCTLSTKQLF 55
          M+KMNQA EKMKMLVG+EV+DE+QA+    D+ SS  FM+D NRNC L+TKQ F
Sbjct: 1  MDKMNQAIEKMKMLVGMEVEDEQQAA----DEESSLSFMEDLNRNCALTTKQRF 50

The following BLAST results are available for this feature:
BLAST of Cmc11g0284471 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460845.15.1e-2098.15PREDICTED: vesicle transport protein SFT2B [Cucumis melo] >XP_008460846.1 PREDIC... [more]
XP_038900581.11.1e-1996.30vesicle transport protein SFT2B [Benincasa hispida] >XP_038900582.1 vesicle tran... [more]
XP_004147336.11.1e-1996.30vesicle transport protein SFT2B [Cucumis sativus] >XP_011649441.1 vesicle transp... [more]
XP_022158451.11.8e-1787.04vesicle transport protein SFT2B [Momordica charantia][more]
XP_022932027.13.8e-1590.38vesicle transport protein SFT2B isoform X2 [Cucurbita moschata][more]
BLAST of Cmc11g0284471 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc11g0284471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CDD02.5e-2098.15Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103499598 PE=3 SV=1[more]
A0A0A0LMG75.5e-2096.30Vesicle transport protein OS=Cucumis sativus OX=3659 GN=Csa_2G336760 PE=3 SV=1[more]
A0A6J1E0X78.8e-1887.04Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111024936 PE=3 SV... [more]
A0A6J1IFS21.8e-1590.38Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111472372 PE=3 SV=1[more]
A0A6J1IE991.8e-1590.38Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111472372 PE=3 SV=1[more]
BLAST of Cmc11g0284471 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G23550.11.2e-1164.81Got1/Sft2-like vescicle transport protein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc11g0284471.1Cmc11g0284471.1mRNA