Cmc10g0281511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0281511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr10: 20160142 .. 20161203 (+)
RNA-Seq Expression	Cmc10g0281511
Synteny	Cmc10g0281511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAACGATCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAACTAGATGGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGTATAAGTCTGAAACTCTTAAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTACATGATAAAATATGAAATCCAATCTCAGCTCTCAGCACCTAGTACACCTCAACAAAATGGTGTATCAAAAAGGAGAAATAGAACCTTGTTAGACATGCATTCAATGATGAGTTATGCTCATTTGCCTAGCTCATTTTGGGGGTATGCAGTAGAGGCTGTAGTTCATATCTTGAACAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCAAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCAAATTTGTTGCTTACCCTAAAGAGACGAGAGGTGGTATATTCTTCAATCCAAAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGATATCATAATCCACGAAGCAAATTAGTATTAAATGAAGCGACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCTTCATCAAGAGTTCATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGTAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTATTGAGAATCCATTGTCCTATAAAAAGGCAATGAATTATATAGATAAAGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTCAATTCAGTATGGGAGCTTGTAG

mRNA sequence

ATGACAAAACGATCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAACTAGATGGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGTATAAGTCTGAAACTCTTAAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTACATGATAAAATATGAAATCCAATCTCAGCTCTCAGCACCTAGTACACCTCAACAAAATGGTGTATCAAAAAGGAGAAATAGAACCTTGTTAGACATGCATTCAATGATGAGTTATGCTCATTTGCCTAGCTCATTTTGGGGGTATGCAGTAGAGGCTGTAGTTCATATCTTGAACAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCAAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCAAATTTGTTGCTTACCCTAAAGAGACGAGAGGTGGTATATTCTTCAATCCAAAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGATATCATAATCCACGAAGCAAATTAGTATTAAATGAAGCGACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCTTCATCAAGAGTTCATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGTAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTATTGAGAATCCATTGTCCTATAAAAAGGCAATGAATTATATAGATAAAGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTCAATTCAGTATGGGAGCTTGTAG

Coding sequence (CDS)

ATGACAAAACGATCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAACTAGATGGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGTATAAGTCTGAAACTCTTAAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTACATGATAAAATATGAAATCCAATCTCAGCTCTCAGCACCTAGTACACCTCAACAAAATGGTGTATCAAAAAGGAGAAATAGAACCTTGTTAGACATGCATTCAATGATGAGTTATGCTCATTTGCCTAGCTCATTTTGGGGGTATGCAGTAGAGGCTGTAGTTCATATCTTGAACAATGTTTCCTCGAAGAGTGTTTCTGAAACACCTTTCAAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGAATCTGGGGTTGTCCAGCACACGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCAAATTTGTTGCTTACCCTAAAGAGACGAGAGGTGGTATATTCTTCAATCCAAAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGATATCATAATCCACGAAGCAAATTAGTATTAAATGAAGCGACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCTTCATCAAGAGTTCATGAAACCACCACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGTAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTATTGAGAATCCATTGTCCTATAAAAAGGCAATGAATTATATAGATAAAGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTCAATTCAGTATGGGAGCTTGTAG

Protein sequence

MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSETLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVSKRRNRTLLDMHSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEEDHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVSQPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL

Homology

[Close]

BLAST of Cmc10g0281511 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 633.6 bits (1633), Expect = 9.9e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 570

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 571 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 630

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 631 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 690

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 691 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc10g0281511 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 633.6 bits (1633), Expect = 9.9e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 444

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 445 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 504

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 505 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 564

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 565 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc10g0281511 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 633.6 bits (1633), Expect = 9.9e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 444

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 445 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 504

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 505 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 564

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 565 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc10g0281511 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 630.9 bits (1626), Expect = 6.4e-177
Identity = 310/354 (87.57%), Postives = 330/354 (93.22%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKI RSDRGGEYMDL FQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 570

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+PKENRVFVSTNATFLEE
Sbjct: 571 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEE 630

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 631 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 690

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 691 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc10g0281511 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 629.8 bits (1623), Expect = 1.4e-176
Identity = 308/354 (87.01%), Postives = 331/354 (93.50%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPL+LIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 1   MTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 60

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 61  ALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 120

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM HSMMSYA LPSSFWGYAVE  VHILNNV SKSVS+ PF+LWRGRKPSL
Sbjct: 121 SERRNRTLLDMVHSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSKIPFELWRGRKPSL 180

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 240

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 241 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 300

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 301 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 354

[Close]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-43
Identity = 123/375 (32.80%), Postives = 195/375 (52.00%), Query Frame = 0


Query: 5   SFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSETLKK 64
           SF     R    L+L++SD+CGPM +++    +YF++FIDD SR  ++Y+++ K +  + 
Sbjct: 469 SFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQV 528

Query: 65  FKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVSKRR 124
           F+++   VE    +K+K LRSD GGEY    F++Y   + I+ + + P TPQ NGV++R 
Sbjct: 529 FQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERM 588

Query: 125 NRTLLD-MHSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVS-ETPFKLWRGRKPSLSHF 184
           NRT+++ + SM+  A LP SFWG AV+   +++N   S  ++ E P ++W  ++ S SH 
Sbjct: 589 NRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHL 648

Query: 185 RIWGCP--AHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEED 244
           +++GC   AHV      KL+ +S  C F+ Y  E  G   ++P + +V  S +  F  E 
Sbjct: 649 KVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RES 708

Query: 245 HMRYHNPRSKLVLN--------------------EATDESTRVVDEVGPSSRVHETTTSG 304
            +R     S+ V N                      TDE +   ++ G      E    G
Sbjct: 709 EVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEG 768

Query: 305 ---QSHPSQSLRMPQ---CSGRIVSQPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDK 350
                HP+Q     Q    S R   +  RY S TE  V+I DD    P S K+ +++ +K
Sbjct: 769 VEEVEHPTQGEEQHQPLRRSERPRVESRRYPS-TE-YVLISDD--REPESLKEVLSHPEK 828

[Close]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-32
Identity = 72/203 (35.47%), Postives = 118/203 (58.13%), Query Frame = 0


Query: 14  KEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSETLKKFKEYKTEVE 73
           K PL ++HSD+CGP+   T  D  YF+ F+D ++ Y   YL++YKS+    F+++  + E
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 74  NLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVSKRRNRTLLD-MH 133
              + K+  L  D G EY+    + + +K  I   L+ P TPQ NGVS+R  RT+ +   
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 134 SMMSYAHLPSSFWGYAVEAVVHILNNVSSKSV---SETPFKLWRGRKPSLSHFRIWGCPA 193
           +M+S A L  SFWG AV    +++N + S+++   S+TP+++W  +KP L H R++G   
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATV 657

Query: 194 HVLVTNPK-KLEPRSRLCKFVAY 212
           +V + N + K + +S    FV Y
Sbjct: 658 YVHIKNKQGKFDDKSFKSIFVGY 680

[Close]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 70/240 (29.17%), Postives = 135/240 (56.25%), Query Frame = 0


Query: 3   KRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSETL 62
           K  F+     + +PLE I+SD+     + +  ++ Y++ F+D ++RY +LY ++ KS+  
Sbjct: 489 KVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVK 548

Query: 63  KKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVSK 122
             F  +K+ VEN    +I  L SD GGE++ LR  DY+ ++ I    S P TP+ NG+S+
Sbjct: 549 DTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSE 608

Query: 123 RRNRTLLDMH-SMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVS-ETPFKLWRGRKPSLS 182
           R++R +++M  +++S+A +P ++W YA    V+++N + +  +  ++PF+   G+ P+  
Sbjct: 609 RKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYE 668

Query: 183 HFRIWGCPAHVLVT--NPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLE 239
             +++GC  +  +   N  KLE +S+ C F+ Y       +  +    R++ S +  F E
Sbjct: 669 KLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-26
Identity = 67/240 (27.92%), Postives = 132/240 (55.00%), Query Frame = 0


Query: 3   KRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSETL 62
           K  F+     +  PLE I+SD+     + +  ++ Y++ F+D ++RY +LY ++ KS+  
Sbjct: 510 KVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVK 569

Query: 63  KKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVSK 122
           + F  +K  +EN    +I    SD GGE++ L   +Y  ++ I    S P TP+ NG+S+
Sbjct: 570 ETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSE 629

Query: 123 RRNRTLLDMH-SMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVS-ETPFKLWRGRKPSLS 182
           R++R +++   +++S+A +P ++W YA    V+++N + +  +  E+PF+   G  P+  
Sbjct: 630 RKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYD 689

Query: 183 HFRIWGCPAHVLVT--NPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLE 239
             R++GC  +  +   N  KL+ +SR C F+ Y       +  + + +R+++S +  F E
Sbjct: 690 KLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-13
Identity = 69/293 (23.55%), Postives = 131/293 (44.71%), Query Frame = 0


Query: 9   KGYRAK-----EPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE--T 68
           KG R K     EP + +H+D+ GP++   +    YFISF D+ +R+ ++Y +  + E   
Sbjct: 648 KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESI 707

Query: 69  LKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGVS 128
           L  F      ++N  + ++ +++ DRG EY +     +     I +  +  +  + +GV+
Sbjct: 708 LNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVA 767

Query: 129 KRRNRTLL-DMHSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSLS 188
           +R NRTLL D  +++  + LP+  W  AVE    I N++ S    ++  +        ++
Sbjct: 768 ERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDIT 827

Query: 189 HFRIWGCPAHVLVTNP-KKLEPRSRLCKFVAYP-KETRGGIFFNPKENRVFVSTNATFLE 248
               +G P  V   NP  K+ PR  +  +  +P + + G I + P   +   +TN   L+
Sbjct: 828 TILPFGQPVIVNNHNPDSKIHPRG-IPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQ 887

Query: 249 E-----DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQ 287
           +     D   Y        LN  T  +   +++        + T S   + S+
Sbjct: 888 DNQSKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSE 939

[Close]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.8e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 570

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 571 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 630

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 631 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 690

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 691 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.8e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 444

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 445 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 504

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 505 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 564

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 565 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.8e-178
Identity = 311/354 (87.85%), Postives = 332/354 (93.79%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 444

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 445 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 504

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 505 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 564

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 565 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 618

[Close]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.1e-177
Identity = 310/354 (87.57%), Postives = 330/354 (93.22%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPLELIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYKTEVENLLSKKIKI RSDRGGEYMDL FQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM  SMMSYA LPSSFWGYAVE  VHILNNV SKSVSETPF+LWRGRKPSL
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSL 570

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+PKENRVFVSTNATFLEE
Sbjct: 571 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEE 630

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 631 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 690

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 691 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 744

[Close]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.9e-177
Identity = 308/354 (87.01%), Postives = 331/354 (93.50%), Query Frame = 0


Query: 1   MTKRSFTGKGYRAKEPLELIHSDLCGPMNVKTRWDFEYFISFIDDYSRYGYLYLMEYKSE 60
           MTKR FTGKGYRAKEPL+LIHSDLCGPMNVK R  FEYFISFIDDYSRYGYLYLME+KSE
Sbjct: 1   MTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 60

Query: 61  TLKKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIKYEIQSQLSAPSTPQQNGV 120
            L+KFKEYK EVENLLSKKIKILRSDRGGEYMDLRFQDYMI++ IQSQLSAP TPQQNGV
Sbjct: 61  ALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 120

Query: 121 SKRRNRTLLDM-HSMMSYAHLPSSFWGYAVEAVVHILNNVSSKSVSETPFKLWRGRKPSL 180
           S+RRNRTLLDM HSMMSYA LPSSFWGYAVE  VHILNNV SKSVS+ PF+LWRGRKPSL
Sbjct: 121 SERRNRTLLDMVHSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSKIPFELWRGRKPSL 180

Query: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCKFVAYPKETRGGIFFNPKENRVFVSTNATFLEE 240
           SHFRIWGCPAHVLVTNPKKLEPRSRLC+FV YPKETRGG+FF+P+ENRVFVSTNATFLEE
Sbjct: 181 SHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE 240

Query: 241 DHMRYHNPRSKLVLNEATDESTRVVDEVGPSSRVHETTTSGQSHPSQSLRMPQCSGRIVS 300
           DHMR H PRSKLVL+EATDESTRVVDEVGPSSRV ETTTSGQSHPSQSLRMP+ SGR+VS
Sbjct: 241 DHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVS 300

Query: 301 QPNRYLSLTETQVVIPDDGIENPLSYKKAMNYIDKDQWVKAMNLEMESIQYGSL 354
           QPNRYL LTETQVVIPDDG+E+PLSYK+AMN +DKDQWVKAM+LEMES+ + S+
Sbjct: 301 QPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSV 354

The following BLAST results are available for this feature:

BLAST of Cmc10g0281511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	9.9e-178	87.85	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	9.9e-178	87.85	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	9.9e-178	87.85	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	6.4e-177	87.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	1.4e-176	87.01	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0281511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-43	32.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-32	35.47	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.1e-27	29.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-26	27.92	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.7e-13	23.55	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	4.8e-178	87.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	4.8e-178	87.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	4.8e-178	87.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	3.1e-177	87.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3CYF4	6.9e-177	87.01	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]

BLAST of Cmc10g0281511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..292
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 9..270
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..184 e-value: 2.3E-34 score: 120.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 14..115 e-value: 4.7E-10 score: 39.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 12..176 score: 20.844597
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0281511.1	Cmc10g0281511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding