Cmc10g0281071 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0281071
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 19220944 .. 19221489 (+)
RNA-Seq ExpressionCmc10g0281071
SyntenyCmc10g0281071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCATGGGATTGTTCTACAGACTTTACGTGATAAACAGTTATACGCTATGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGGAAAAGGAGTTAGTATCGATCCACAAAAAGTAGAAGCAGTTGTCAATTGGGAAAGACCAACTAGTTCGACAGAAATATGTAGTTTCCTAGGTTTGGCTGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCACTTTGACAAGTAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTTCAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTAA

mRNA sequence

ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCATGGGATTGTTCTACAGACTTTACGTGATAAACAGTTATACGCTATGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGGAAAAGGAGTTAGTATCGATCCACAAAAAGTAGAAGCAGTTGTCAATTGGGAAAGACCAACTAGTTCGACAGAAATATGTAGTTTCCTAGGTTTGGCTGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCACTTTGACAAGTAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTTCAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTAA

Coding sequence (CDS)

ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAAGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTTATTGATGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCATGGGATTGTTCTACAGACTTTACGTGATAAACAGTTATACGCTATGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGGAAAAGGAGTTAGTATCGATCCACAAAAAGTAGAAGCAGTTGTCAATTGGGAAAGACCAACTAGTTCGACAGAAATATGTAGTTTCCTAGGTTTGGCTGGATACTATAGGCGTTTTATTGAGGACTTCTCTCGATTGGCATTGCCTTTGACCACTTTGACAAGTAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTTCAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTAA

Protein sequence

MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQLYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYRRFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCDA
Homology
BLAST of Cmc10g0281071 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 6.1e-91
Identity = 168/181 (92.82%), Postives = 173/181 (95.58%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           M FGLTNAPAVFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+ SFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDKCEQSFQELKKRLV+APILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 A 182
           A
Sbjct: 842 A 842

BLAST of Cmc10g0281071 vs. NCBI nr
Match: TYJ96975.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 167/181 (92.27%), Postives = 173/181 (95.58%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+ SFLGLAGYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFS+LALPLT LT KNAKFEWSDKCEQSFQELKKRLV+APILAL VTGKDYVIYCD
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 711

Query: 181 A 182
           A
Sbjct: 712 A 712

BLAST of Cmc10g0281071 vs. NCBI nr
Match: KAA0061419.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.2e-90
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPF LTNAP VFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 1   MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 60

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+CSFLGLAGYYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 120

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDK EQSFQELKKRLV+ PILALPVTGKDYVIYCD
Sbjct: 121 RFIEDFSRLALPLTALTRKNAKFEWSDKYEQSFQELKKRLVTTPILALPVTGKDYVIYCD 180

Query: 181 A 182
           A
Sbjct: 181 A 181

BLAST of Cmc10g0281071 vs. NCBI nr
Match: TYK28679.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.2e-90
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPF LTNAP VFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 453 MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 512

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+CSFLGLAGYYR
Sbjct: 513 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 572

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDK EQSFQELKKRLV+ PILALPVTGKDYVIYCD
Sbjct: 573 RFIEDFSRLALPLTALTRKNAKFEWSDKYEQSFQELKKRLVTTPILALPVTGKDYVIYCD 632

Query: 181 A 182
           A
Sbjct: 633 A 633

BLAST of Cmc10g0281071 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 8.9e-90
Identity = 165/181 (91.16%), Postives = 172/181 (95.03%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMN+IFH+YLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLR+KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERP S+TE+ SFLGLAGYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KN KFEWSDKCEQSFQELKKRLV+APILALPVTGKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

Query: 181 A 182
           A
Sbjct: 513 A 513

BLAST of Cmc10g0281071 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.1e-33
Identity = 70/182 (38.46%), Postives = 109/182 (59.89%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H +  G+V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           L     KCEF  ++  FLGHV++  G+  +P+K+EA+  +  PT   EI +FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSD-KCEQSFQELKKRLVSAPILALPVTGKDYVIYC 180
           +FI +F+ +A P+T    KN K + ++ + + +F++LK  +   PIL +P   K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DA 182
           DA
Sbjct: 514 DA 515

BLAST of Cmc10g0281071 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.0e-32
Identity = 72/183 (39.34%), Postives = 109/183 (59.56%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGL NAPA F   MN I    L++  +V++DDI+++S     H     +V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           L     KCEF  ++  FLGH+V+  G+  +P KV+A+V++  PT   EI +FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCE--QSFQELKKRLVSAPILALPVTGKDYVIY 180
           +FI +++ +A P+T+   K  K + + K E  ++F++LK  ++  PIL LP   K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

Query: 181 CDA 182
            DA
Sbjct: 513 TDA 514

BLAST of Cmc10g0281071 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-30
Identity = 74/192 (38.54%), Postives = 110/192 (57.29%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           +PFGL NAPA+F  +++ I  +++ +   V+IDDI+V+S D ++H ++  +VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           L     K  F   QV FLG++V+  G+  DP+KV A+     PTS  E+  FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRLALPLTTLTS---KNAKFEWSDKCE--------QSFQELKKRLVSAPILALP 180
           +FI+D++++A PLT LT     N K   S K          QSF +LK  L S+ ILA P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 VTGKDYVIYCDA 182
              K + +  DA
Sbjct: 430 CFTKPFHLTTDA 441

BLAST of Cmc10g0281071 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-26
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MP+G++ APA F   +N I  +  +  V+ ++DDIL++S     H +H   VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S KG +   + ++ V+ W++P +  E+  FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPIL 167
           +FI   S+L  PL  L  K+ +++W+    Q+ + +K+ LVS P+L
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

BLAST of Cmc10g0281071 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-26
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MP+G++ APA F   +N I  +  +  V+ ++DDIL++S     H +H   VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S KG +   + ++ V+ W++P +  E+  FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPIL 167
           +FI   S+L  PL  L  K+ +++W+    Q+ + +K+ LVS P+L
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

BLAST of Cmc10g0281071 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.0e-91
Identity = 168/181 (92.82%), Postives = 173/181 (95.58%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           M FGLTNAPAVFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+ SFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDKCEQSFQELKKRLV+APILALPVTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 A 182
           A
Sbjct: 842 A 842

BLAST of Cmc10g0281071 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 167/181 (92.27%), Postives = 173/181 (95.58%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+ SFLGLAGYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFS+LALPLT LT KNAKFEWSDKCEQSFQELKKRLV+APILAL VTGKDYVIYCD
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 711

Query: 181 A 182
           A
Sbjct: 712 A 712

BLAST of Cmc10g0281071 vs. ExPASy TrEMBL
Match: A0A5D3DZ50 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00500 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.5e-90
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPF LTNAP VFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 453 MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 512

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+CSFLGLAGYYR
Sbjct: 513 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 572

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDK EQSFQELKKRLV+ PILALPVTGKDYVIYCD
Sbjct: 573 RFIEDFSRLALPLTALTRKNAKFEWSDKYEQSFQELKKRLVTTPILALPVTGKDYVIYCD 632

Query: 181 A 182
           A
Sbjct: 633 A 633

BLAST of Cmc10g0281071 vs. ExPASy TrEMBL
Match: A0A5A7V6X5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G001180 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.5e-90
Identity = 166/181 (91.71%), Postives = 171/181 (94.48%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPF LTNAP VFMDLMN+IFHQYLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLRDKQ
Sbjct: 1   MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 60

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERPTS+TE+CSFLGLAGYYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 120

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KNAKFEWSDK EQSFQELKKRLV+ PILALPVTGKDYVIYCD
Sbjct: 121 RFIEDFSRLALPLTALTRKNAKFEWSDKYEQSFQELKKRLVTTPILALPVTGKDYVIYCD 180

Query: 181 A 182
           A
Sbjct: 181 A 181

BLAST of Cmc10g0281071 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.3e-90
Identity = 165/181 (91.16%), Postives = 172/181 (95.03%), Query Frame = 0

Query: 1   MPFGLTNAPAVFMDLMNKIFHQYLDQFVIVFIDDILVYSVDRESHEEHHGIVLQTLRDKQ 60
           MPFGLTNAPAVFMDLMN+IFH+YLDQFVIVFIDDILVYSVDRESHEEH  IVLQTLR+KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAMFSKCEFWLEQVVFLGHVVSGKGVSIDPQKVEAVVNWERPTSSTEICSFLGLAGYYR 120
           LYA FSKCEFWLEQVVFLGHVVS KGVS+DPQKVEAVVNWERP S+TE+ SFLGLAGYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPILALPVTGKDYVIYCD 180
           RFIEDFSRLALPLT LT KN KFEWSDKCEQSFQELKKRLV+APILALPVTGKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

Query: 181 A 182
           A
Sbjct: 921 A 921

BLAST of Cmc10g0281071 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 55/124 (44.35%), Postives = 81/124 (65.32%), Query Frame = 0

Query: 48  HHGIVLQTLRDKQLYAMFSKCEFWLEQVVFLG--HVVSGKGVSIDPQKVEAVVNWERPTS 107
           H G+VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 STEICSFLGLAGYYRRFIEDFSRLALPLTTLTSKNAKFEWSDKCEQSFQELKKRLVSAPI 167
           +TE+  FLGL GYYRRF++++ ++  PLT L  KN+  +W++    +F+ LK  + + P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALP 170
           LALP
Sbjct: 123 LALP 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053222.16.1e-9192.82hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa][more]
TYJ96975.11.8e-9092.27DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0061419.15.2e-9091.71reverse transcriptase [Cucumis melo var. makuwa][more]
TYK28679.15.2e-9091.71DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0050493.18.9e-9091.16DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P043236.1e-3338.46Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208253.0e-3239.34Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P92.2e-3038.54Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P0CT413.2e-2634.94Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT343.2e-2634.94Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7UBV93.0e-9192.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BEU18.7e-9192.27DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DZ502.5e-9091.71DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V6X52.5e-9091.71Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74... [more]
A0A5A7U2V74.3e-9091.16Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
Match NameE-valueIdentityDescription
ATMG00860.13.9e-2744.35DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 145..181
e-value: 3.5E-8
score: 33.4
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..81
e-value: 1.1E-14
score: 54.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..82
score: 10.597533
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..87
e-value: 5.2E-30
score: 106.0
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 92..175
e-value: 1.7E-31
score: 110.0
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 18..167
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 18..167
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..82
e-value: 3.20802E-34
score: 117.311
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0281071.1Cmc10g0281071.1mRNA