Cmc10g0277971 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0277971
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr10: 13932073 .. 13932819 (+)
RNA-Seq ExpressionCmc10g0277971
SyntenyCmc10g0277971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTGAGGATCCATTGTGCTATAAAACAGGCAATGATTGATGTAGATAAGGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTTTATGTACTTCAATTCAGTGTGGCAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGCTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATTGCAAATGGATGTCAAGACTTCTTTTCTGAATGGAAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTTCAAGCTGAATCGATCAATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAAGAATGATGTGGGATACCTTACAGGAAGAGAAACGACTCTTCCATTGGTACATACTAAACAATGTAGACGAAATATCGGAGTATCGCAAGTAAGCATTCCTCATCTTCATAATTCTTAA

mRNA sequence

ATGGTGTTGAGGATCCATTGTGCTATAAAACAGGCAATGATTGATGTAGATAAGGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTTTATGTACTTCAATTCAGTGTGGCAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGCTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATTGCAAATGGATGTCAAGACTTCTTTTCTGAATGGAAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTTCAAGCTGAATCGATCAATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAAGAATGATGTGGGATACCTTACAGGAAGAGAAACGACTCTTCCATTGGTACATACTAAACAATGTAGACGAAATATCGGAGTATCGCAAGTAAGCATTCCTCATCTTCATAATTCTTAA

Coding sequence (CDS)

ATGGTGTTGAGGATCCATTGTGCTATAAAACAGGCAATGATTGATGTAGATAAGGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTTTATGTACTTCAATTCAGTGTGGCAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGCTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGAAAGGGGTTGACTATGAGGAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATTGCAAATGGATGTCAAGACTTCTTTTCTGAATGGAAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTTCAAGCTGAATCGATCAATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAATGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAAGAATGATGTGGGATACCTTACAGGAAGAGAAACGACTCTTCCATTGGTACATACTAAACAATGTAGACGAAATATCGGAGTATCGCAAGTAAGCATTCCTCATCTTCATAATTCTTAA

Protein sequence

MVLRIHCAIKQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIKNDVGYLTGRETTLPLVHTKQCRRNIGVSQVSIPHLHNS
Homology
BLAST of Cmc10g0277971 vs. NCBI nr
Match: KAA0067047.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26284.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 404.1 bits (1037), Expect = 9.0e-109
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0

Query: 25  MNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV 84
           MNLEMEFMYFNSVWQLVDLPE VKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV
Sbjct: 1   MNLEMEFMYFNSVWQLVDLPEEVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV 60

Query: 85  DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ 144
           DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ
Sbjct: 61  DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ 120

Query: 145 EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 204
           EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD
Sbjct: 121 EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 180

Query: 205 DILLIKNDVGYLTGRETTLPLV 227
           +ILLIKNDVGYLTGRETTLPLV
Sbjct: 181 NILLIKNDVGYLTGRETTLPLV 202

BLAST of Cmc10g0277971 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 6.4e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 327 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 386

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 387 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 446

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 447 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 506

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 507 KINKGKVAFLVLYVDDILLIGNDVGYLT 534

BLAST of Cmc10g0277971 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 6.4e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 717 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 776

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 777 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 836

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 837 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 896

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 897 KINKGKVAFLVLYVDDILLIGNDVGYLT 924

BLAST of Cmc10g0277971 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 6.4e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 591 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 650

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 651 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 710

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 711 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 770

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 771 KINKGKVAFLVLYVDDILLIGNDVGYLT 798

BLAST of Cmc10g0277971 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 1.7e-104
Identity = 193/208 (92.79%), Postives = 200/208 (96.15%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 717 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 776

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYT+++GVDYEETFS VAMLKSIRILL IA FYDYEI QMDVKT+FLNGNLEE
Sbjct: 777 KARLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEE 836

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 837 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 896

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 897 KINKGKVAFLVLYVDDILLIGNDVGYLT 924

BLAST of Cmc10g0277971 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-52
Identity = 97/210 (46.19%), Postives = 148/210 (70.48%), Query Frame = 0

Query: 8    AIKQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQ 67
            ++K+ +   +K+Q +KAM  EME +  N  ++LV+LP+G +P+ CKW++K K+D   KL 
Sbjct: 813  SLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLV 872

Query: 68   TFKARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNL 127
             +KARLV KG+ Q+KG+D++E FSPV  + SIR +L +A   D E+ Q+DVKT+FL+G+L
Sbjct: 873  RYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDL 932

Query: 128  EESIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCV 187
            EE I+M QPEGF   G++  V KLN+S+YGLKQA R W ++FD+ +KS  + +   +PCV
Sbjct: 933  EEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCV 992

Query: 188  Y-KKINKGKVAFLVLYVDDILLIKNDVGYL 217
            Y K+ ++     L+LYVDD+L++  D G +
Sbjct: 993  YFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022

BLAST of Cmc10g0277971 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.2e-40
Identity = 85/203 (41.87%), Postives = 124/203 (61.08%), Query Frame = 0

Query: 11   QAMIDVDKDQWVKAMNLEMEFMYFNSVWQLV-DLPEGVKPIGCKWIYKRKRDSAGKLQTF 70
            QAM D   D+W +AM  E+     N  W LV   P  V  +GC+WI+ +K +S G L  +
Sbjct: 944  QAMKD---DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRY 1003

Query: 71   KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 130
            KARLVAKGY QR G+DY ETFSPV    SIRI+L +A    + I Q+DV  +FL G L +
Sbjct: 1004 KARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTD 1063

Query: 131  SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 190
             ++MSQP GF+ + +   V +L ++IYGLKQA R+W +   T + + GF  ++ +  ++ 
Sbjct: 1064 EVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFV 1123

Query: 191  KINKGKVAFLVLYVDDILLIKND 213
                  + ++++YVDDIL+  ND
Sbjct: 1124 LQRGRSIIYMLVYVDDILITGND 1143

BLAST of Cmc10g0277971 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.9e-39
Identity = 81/195 (41.54%), Postives = 118/195 (60.51%), Query Frame = 0

Query: 19   DQWVKAMNLEMEFMYFNSVWQLVDLPEG-VKPIGCKWIYKRKRDSAGKLQTFKARLVAKG 78
            ++W  AM  E+     N  W LV  P   V  +GC+WI+ +K +S G L  +KARLVAKG
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 79   YTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPE 138
            Y QR G+DY ETFSPV    SIRI+L +A    + I Q+DV  +FL G L + ++MSQP 
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 139  GFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVA 198
            GFI + +   V KL +++YGLKQA R+W +     + + GF  +V +  ++       + 
Sbjct: 1086 GFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIV 1145

Query: 199  FLVLYVDDILLIKND 213
            ++++YVDDIL+  ND
Sbjct: 1146 YMLVYVDDILITGND 1160

BLAST of Cmc10g0277971 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 9.5e-37
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 0

Query: 17   DKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAK 76
            DK  W +A+N E+     N+ W +   PE    +  +W++  K +  G    +KARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 77   GYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQP 136
            G+TQ+  +DYEETF+PVA + S R +L +   Y+ ++ QMDVKT+FLNG L+E I+M  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 137  EGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY--KKINKG 196
            +G         V KLN++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K N  
Sbjct: 1022 QGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNIN 1081

Query: 197  KVAFLVLYVDDILLIKNDV 214
            +  +++LYVDD+++   D+
Sbjct: 1082 ENIYVLLYVDDVVIATGDM 1098

BLAST of Cmc10g0277971 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 21  WVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQ 80
           W +AM  E++ +  N  W LV  P     +GCKW++K K  S G L   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 81  RKGVDYEETFSPVAMLKSIRILLFIA 107
            +G+ + ET+SPV    +IR +L +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

BLAST of Cmc10g0277971 vs. ExPASy TrEMBL
Match: A0A5A7VIS3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00570 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.3e-109
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0

Query: 25  MNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV 84
           MNLEMEFMYFNSVWQLVDLPE VKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV
Sbjct: 1   MNLEMEFMYFNSVWQLVDLPEEVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQRKGV 60

Query: 85  DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ 144
           DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ
Sbjct: 61  DYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFITQGQ 120

Query: 145 EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 204
           EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD
Sbjct: 121 EQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 180

Query: 205 DILLIKNDVGYLTGRETTLPLV 227
           +ILLIKNDVGYLTGRETTLPLV
Sbjct: 181 NILLIKNDVGYLTGRETTLPLV 202

BLAST of Cmc10g0277971 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.1e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 717 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 776

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 777 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 836

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 837 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 896

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 897 KINKGKVAFLVLYVDDILLIGNDVGYLT 924

BLAST of Cmc10g0277971 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.1e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 327 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 386

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 387 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 446

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 447 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 506

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 507 KINKGKVAFLVLYVDDILLIGNDVGYLT 534

BLAST of Cmc10g0277971 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.1e-107
Identity = 197/208 (94.71%), Postives = 202/208 (97.12%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 591 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 650

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYTQR+GVDYEETFSPVAMLKSIRILL IATFYDYEI QMDVKT+FLNGNLEE
Sbjct: 651 KARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEE 710

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 711 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 770

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 771 KINKGKVAFLVLYVDDILLIGNDVGYLT 798

BLAST of Cmc10g0277971 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.5e-105
Identity = 193/208 (92.79%), Postives = 200/208 (96.15%), Query Frame = 0

Query: 10  KQAMIDVDKDQWVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTF 69
           KQAM DVDKDQWVKAM+LEME MYFNSVW+LVDLPEGVKPIGCKWIYKRKRDSAGK+QTF
Sbjct: 717 KQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTF 776

Query: 70  KARLVAKGYTQRKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEE 129
           KARLVAKGYT+++GVDYEETFS VAMLKSIRILL IA FYDYEI QMDVKT+FLNGNLEE
Sbjct: 777 KARLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNGNLEE 836

Query: 130 SIFMSQPEGFITQGQEQKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 189
           SIFMSQPEGFITQGQEQKV KLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK
Sbjct: 837 SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 896

Query: 190 KINKGKVAFLVLYVDDILLIKNDVGYLT 218
           KINKGKVAFLVLYVDDILLI NDVGYLT
Sbjct: 897 KINKGKVAFLVLYVDDILLIGNDVGYLT 924

BLAST of Cmc10g0277971 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-42
Identity = 83/196 (42.35%), Postives = 125/196 (63.78%), Query Frame = 0

Query: 21  WVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQ 80
           W  AM+ E+  M     W++  LP   KPIGCKW+YK K +S G ++ +KARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 81  RKGVDYEETFSPVAMLKSIRILLFIATFYDYEILQMDVKTSFLNGNLEESIFMSQPEGFI 140
           ++G+D+ ETFSPV  L S++++L I+  Y++ + Q+D+  +FLNG+L+E I+M  P G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 141 T-QGQE---QKVFKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKV 200
             QG       V  L +SIYGLKQASR W ++F   +  +GF Q+  +   + KI     
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 201 AFLVLYVDDILLIKND 213
             +++YVDDI++  N+
Sbjct: 278 LCVLVYVDDIIICSNN 293

BLAST of Cmc10g0277971 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 21  WVKAMNLEMEFMYFNSVWQLVDLPEGVKPIGCKWIYKRKRDSAGKLQTFKARLVAKGYTQ 80
           W +AM  E++ +  N  W LV  P     +GCKW++K K  S G L   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 81  RKGVDYEETFSPVAMLKSIRILLFIA 107
            +G+ + ET+SPV    +IR +L +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067047.19.0e-10999.01gag/pol protein [Cucumis melo var. makuwa] >TYK26284.1 gag/pol protein [Cucumis ... [more]
TYK15984.16.4e-10794.71gag/pol protein [Cucumis melo var. makuwa][more]
KAA0025945.16.4e-10794.71gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
KAA0059226.16.4e-10794.71gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035907.11.7e-10492.79gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109782.1e-5246.19Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT949.2e-4041.87Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW25.9e-3941.54Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P041469.5e-3739.20Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925201.9e-1343.02Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7VIS34.3e-10999.01Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00570... [more]
A0A5A7TZD03.1e-10794.71Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5D3CYF43.1e-10794.71Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111... [more]
A0A5A7UYE83.1e-10794.71Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015... [more]
A0A5A7T2V98.5e-10592.79Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.2e-4242.35cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.11.4e-1443.02Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 35..218
e-value: 4.6E-59
score: 200.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 9..210
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 35..212

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0277971.1Cmc10g0277971.1mRNA