Cmc10g0276411 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0276411
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase domain-containing protein
LocationCMiso1.1chr10: 11393394 .. 11394010 (-)
RNA-Seq ExpressionCmc10g0276411
SyntenyCmc10g0276411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTTGGAGCAAATTCGGATTTTCATTTGGTGCTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGAGTTAGAATTTCTATTTGGTATGGCTGGAAAGCTTATTCAATTTACTACACCTTTCATGAAGAAATTGTAAACCAAAAACGACTAAAAATTGGTTAAATTGTAGGAACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGTAAGTTTTAGAGGATCTCAAAATGAAGAGTTTGATATAAAGAACACTCATTTTGGTTAAGTATTGAGAAAGTTATAGTTCTTTGAAGTTTATGTTAGAAATCTGGAAATTTTAGAGAATTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGAGCGTCATCTTTGGTGCGACATGTTATGTATATCTTTAGGAAACCAGAATGTTTAAGGTTTTAATACTCGGTTGGGTTGTTGGCAGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCC

mRNA sequence

ATGAAGAACGTTGGAGCAAATTCGGATTTTCATTTGGTGCTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGAGTTAGAATTTCTATTTGGAACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCC

Coding sequence (CDS)

ATGAAGAACGTTGGAGCAAATTCGGATTTTCATTTGGTGCTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGAGTTAGAATTTCTATTTGGAACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGCCGAGAAGAATTAA

Protein sequence

MKNVGANSDFHLVLLMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICLQAEKN
Homology
[Close]
BLAST of Cmc10g0276411 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG
Sbjct: 103 LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 162

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 163 IRFICLQ 169

[Close]
BLAST of Cmc10g0276411 vs. NCBI nr
Match: KAA0043123.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           +++  GQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG
Sbjct: 612 VLQTAGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 671

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 672 IRFICLQ 678

[Close]
BLAST of Cmc10g0276411 vs. NCBI nr
Match: KAA0032946.1 (uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           ++ KTGQLVFTRNQEVSGF+CISECI GVRISIWNKLKRSCARDSGSGSVLRVIC+YARG
Sbjct: 232 MIDKTGQLVFTRNQEVSGFACISECISGVRISIWNKLKRSCARDSGSGSVLRVICIYARG 291

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 292 IRFICLQ 298

[Close]
BLAST of Cmc10g0276411 vs. NCBI nr
Match: KAA0042134.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 16 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 75
          MKKTGQLVFTRNQEVSG SCISECIGGVRISIW+KLKRSCA DSGSGSVLRVICVYARGI
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGSGSVLRVICVYARGI 60

Query: 76 RFICLQ 82
          RFICLQ
Sbjct: 61 RFICLQ 66

[Close]
BLAST of Cmc10g0276411 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 21  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 80
           QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL
Sbjct: 67  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 126

Query: 81  Q 82
           Q
Sbjct: 127 Q 127

[Close]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG
Sbjct: 103 LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 162

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 163 IRFICLQ 169

[Close]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match: A0A5A7TIE3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.3e-28
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           +++  GQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG
Sbjct: 612 VLQTAGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 671

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 672 IRFICLQ 678

[Close]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 16 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 75
          MKKTGQLVFTRNQEVSG SCISECIGGVRISIW+KLKRSCA DSGSGSVLRVICVYARGI
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGSGSVLRVICVYARGI 60

Query: 76 RFICLQ 82
          RFICLQ
Sbjct: 61 RFICLQ 66

[Close]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match: A0A5A7SSI1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00200 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 15  LMKKTGQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARG 74
           ++ KTGQLVFTRNQEVSGF+CISECI GVRISIWNKLKRSCARDSGSGSVLRVIC+YARG
Sbjct: 232 MIDKTGQLVFTRNQEVSGFACISECISGVRISIWNKLKRSCARDSGSGSVLRVICIYARG 291

Query: 75  IRFICLQ 82
           IRFICLQ
Sbjct: 292 IRFICLQ 298

[Close]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 21  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 80
           QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL
Sbjct: 67  QLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGIRFICL 126

Query: 81  Q 82
           Q
Sbjct: 127 Q 127

The following BLAST results are available for this feature:
BLAST of Cmc10g0276411 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056684.16.3e-30100.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0043123.11.7e-2792.54transposase [Cucumis melo var. makuwa][more]
KAA0032946.12.3e-2791.04uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa][more]
KAA0042134.12.3e-2795.45DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0035073.12.5e-26100.00uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa][more]
BLAST of Cmc10g0276411 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UNA33.1e-30100.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73... [more]
A0A5A7TIE38.3e-2892.54Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE... [more]
A0A5A7TFC51.1e-2795.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7SSI11.1e-2791.04Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7SX021.2e-26100.00CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of Cmc10g0276411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0276411.1Cmc10g0276411.1mRNA