Cmc10g0275371 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0275371
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 9332269 .. 9332652 (+)
RNA-Seq Expression	Cmc10g0275371
Synteny	Cmc10g0275371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCTTGAATCCAATAAAACTTGGCACCTATTAGACTTACCTCCTAGATGTAAAGCTATAGGCTGCAAATGGGTTTTAGGAAGAAACTCAAACCTGATGGAAGAGAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAGAACATAGATTTCTTTGATACTTTTTCCTCGATCACTAGAATCTCCTTAATTAGAGTGTTGATATCTATAGCTGCCCAAAACAATCTCTTAATCCATCAGATGGATGTCAAAACTGCTTTCCTAAATGGTGATTTAAAAGAAGAGATTTATATGAAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAATTTGTAAACTAGATAAATCCTCTATGGCCTAA

mRNA sequence

ATGGATTCTCTTGAATCCAATAAAACTTGGCACCTATTAGACTTACCTCCTAGATGTAAAGCTATAGGCTGCAAATGGGTTTTAGGAAGAAACTCAAACCTGATGGAAGAGAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAGAACATAGATTTCTTTGATACTTTTTCCTCGATCACTAGAATCTCCTTAATTAGAGTGTTGATATCTATAGCTGCCCAAAACAATCTCTTAATCCATCAGATGGATGTCAAAACTGCTTTCCTAAATGGTGATTTAAAAGAAGAGATTTATATGAAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAATTTGTAAACTAGATAAATCCTCTATGGCCTAA

Coding sequence (CDS)

ATGGATTCTCTTGAATCCAATAAAACTTGGCACCTATTAGACTTACCTCCTAGATGTAAAGCTATAGGCTGCAAATGGGTTTTAGGAAGAAACTCAAACCTGATGGAAGAGAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAGGGAGAACATAGATTTCTTTGATACTTTTTCCTCGATCACTAGAATCTCCTTAATTAGAGTGTTGATATCTATAGCTGCCCAAAACAATCTCTTAATCCATCAGATGGATGTCAAAACTGCTTTCCTAAATGGTGATTTAAAAGAAGAGATTTATATGAAACAACCTGAAGGTTTCATAGTTCACGACCAAGAATCCAAAATTTGTAAACTAGATAAATCCTCTATGGCCTAA

Protein sequence

MDSLESNKTWHLLDLPPRCKAIGCKWVLGRNSNLMEEKYKARLVAKGFRQRENIDFFDTFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKICKLDKSSMA

Homology

[Close]

BLAST of Cmc10g0275371 vs. NCBI nr
Match: GAU21337.1 (hypothetical protein TSUD_189240 [Trifolium subterraneum])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 97/126 (76.98%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESNKTWHL+DLPP CK IGCKW+L +    +   EKYKARLVAKGFRQRENIDFFD
Sbjct: 562 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 621

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA  NL++HQMDVKTAFLNGDL+EEIYM+QPEGF++H QE+K+
Sbjct: 622 TFSPVTRITSIRVLISIAALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 681

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 682 CKLDKS 687

[Close]

BLAST of Cmc10g0275371 vs. NCBI nr
Match: TYK22685.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 100/126 (79.37%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESN+TWHL+DLPP CKAIGCKWVL +    +   +KYKARLVAKGFRQREN+DFFD
Sbjct: 30  MDSLESNRTWHLVDLPPPCKAIGCKWVLRKKFKPDGSIDKYKARLVAKGFRQRENMDFFD 89

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFSS+TRI+ IRVLISIA  NNLLIHQMDVKT FLNGDL+EEIYM+QPEGFIV  QESK+
Sbjct: 90  TFSSVTRITSIRVLISIAVLNNLLIHQMDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKV 149

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 150 CKLDKS 155

[Close]

BLAST of Cmc10g0275371 vs. NCBI nr
Match: KAA0059671.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK26110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           +DSLESNKTWHLLDLP  CKAIGCK VL +    +   +KYKARLVAKGFRQRENIDFFD
Sbjct: 30  IDSLESNKTWHLLDLPSGCKAIGCKRVLKKKLKPDRSVDKYKARLVAKGFRQRENIDFFD 89

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA NNLLIHQMDVKTAFLNGDL+EEIYMKQP+GFIVH QESK+
Sbjct: 90  TFSPVTRITFIRVLISIAALNNLLIHQMDVKTAFLNGDLEEEIYMKQPKGFIVHGQESKV 149

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 150 CKLDKS 155

[Close]

BLAST of Cmc10g0275371 vs. NCBI nr
Match: TYK11906.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESN+TWHL+DLPP CKAIGCKWVL +    +   +KYKARLVAKGFRQRENIDFFD
Sbjct: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA NNLLIHQMDVKTAFLN DL+EEIYMKQ EGFIVH QESK+
Sbjct: 61  TFSPVTRITSIRVLISIAALNNLLIHQMDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKV 120

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 121 CKLDKS 126

[Close]

BLAST of Cmc10g0275371 vs. NCBI nr
Match: GAU47690.1 (hypothetical protein TSUD_245810 [Trifolium subterraneum])

HSP 1 Score: 200.7 bits (509), Expect = 7.7e-48
Identity = 96/126 (76.19%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESNKTWHL+DLPP CK IGCKW+L +    +   EKYKARLVAKGFRQRENIDFFD
Sbjct: 635 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 694

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISI A  NL++HQMDVKTAFLNGDL+EEIYM+QPEGF++H QE+K+
Sbjct: 695 TFSPVTRITSIRVLISIPALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 754

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 755 CKLDKS 760

[Close]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.4e-28
Identity = 61/126 (48.41%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWV--LGRNSNLMEEKYKARLVAKGFRQRENIDFFD 60
           M+SL+ N T+ L++LP   + + CKWV  L ++ +    +YKARLV KGF Q++ IDF +
Sbjct: 834 MESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDE 893

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
            FS + +++ IR ++S+AA  +L + Q+DVKTAFL+GDL+EEIYM+QPEGF V  ++  +
Sbjct: 894 IFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMV 953

Query: 121 CKLDKS 125
           CKL+KS
Sbjct: 954 CKLNKS 959

[Close]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 7    NKTWHLLDLPPRCKAIGCKWVLGRNSNLMEE--KYKARLVAKGFRQRENIDFFDTFSSIT 66
            N TW +   P     +  +WV     N +    +YKARLVA+GF Q+  ID+ +TF+ + 
Sbjct: 920  NNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVA 979

Query: 67   RISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKICKLDKS 125
            RIS  R ++S+  Q NL +HQMDVKTAFLNG LKEEIYM+ P+G  +      +CKL+K+
Sbjct: 980  RISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKA 1037

[Close]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-22
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 7    NKTWHLLDLPP-RCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFDTFSSI 66
            N TW L+  PP     +GC+W+  +  NS+    +YKARLVAKG+ QR  +D+ +TFS +
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 67   TRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKICKLDK 125
             + + IR+++ +A   +  I Q+DV  AFL G L +++YM QP GFI  D+ + +CKL K
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

[Close]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 49/121 (40.50%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 7    NKTWHLL-DLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFDTFSSI 66
            N TW L+   PP    +GC+W+  +  NS+    +YKARLVAKG+ QR  +D+ +TFS +
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 67   TRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKICKLDK 125
             + + IR+++ +A   +  I Q+DV  AFL G L +E+YM QP GF+  D+   +C+L K
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

[Close]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           +D+L  NKTW L+  P     +GCKWV     +S+   ++ KARLVAKGF Q E I F +
Sbjct: 48  LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107

Query: 61  TFSSITRISLIRVLISIAAQ 79
           T+S + R + IR ++++A Q
Sbjct: 108 TYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL
Match: A0A5A7V1T0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00190 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.8e-49
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           +DSLESNKTWHLLDLP  CKAIGCK VL +    +   +KYKARLVAKGFRQRENIDFFD
Sbjct: 30  IDSLESNKTWHLLDLPSGCKAIGCKRVLKKKLKPDRSVDKYKARLVAKGFRQRENIDFFD 89

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA NNLLIHQMDVKTAFLNGDL+EEIYMKQP+GFIVH QESK+
Sbjct: 90  TFSPVTRITFIRVLISIAALNNLLIHQMDVKTAFLNGDLEEEIYMKQPKGFIVHGQESKV 149

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 150 CKLDKS 155

[Close]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL
Match: A0A2Z6MWZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_189240 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.8e-49
Identity = 97/126 (76.98%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESNKTWHL+DLPP CK IGCKW+L +    +   EKYKARLVAKGFRQRENIDFFD
Sbjct: 562 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 621

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA  NL++HQMDVKTAFLNGDL+EEIYM+QPEGF++H QE+K+
Sbjct: 622 TFSPVTRITSIRVLISIAALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 681

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 682 CKLDKS 687

[Close]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL
Match: A0A5D3DGJ1 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001310 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.8e-49
Identity = 100/126 (79.37%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESN+TWHL+DLPP CKAIGCKWVL +    +   +KYKARLVAKGFRQREN+DFFD
Sbjct: 30  MDSLESNRTWHLVDLPPPCKAIGCKWVLRKKFKPDGSIDKYKARLVAKGFRQRENMDFFD 89

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFSS+TRI+ IRVLISIA  NNLLIHQMDVKT FLNGDL+EEIYM+QPEGFIV  QESK+
Sbjct: 90  TFSSVTRITSIRVLISIAVLNNLLIHQMDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKV 149

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 150 CKLDKS 155

[Close]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL
Match: A0A5D3CNA1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00710 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.8e-49
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESN+TWHL+DLPP CKAIGCKWVL +    +   +KYKARLVAKGFRQRENIDFFD
Sbjct: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISIAA NNLLIHQMDVKTAFLN DL+EEIYMKQ EGFIVH QESK+
Sbjct: 61  TFSPVTRITSIRVLISIAALNNLLIHQMDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKV 120

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 121 CKLDKS 126

[Close]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL
Match: A0A2Z6PC97 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_245810 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 96/126 (76.19%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           MDSLESNKTWHL+DLPP CK IGCKW+L +    +   EKYKARLVAKGFRQRENIDFFD
Sbjct: 635 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 694

Query: 61  TFSSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQESKI 120
           TFS +TRI+ IRVLISI A  NL++HQMDVKTAFLNGDL+EEIYM+QPEGF++H QE+K+
Sbjct: 695 TFSPVTRITSIRVLISIPALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 754

Query: 121 CKLDKS 125
           CKLDKS
Sbjct: 755 CKLDKS 760

[Close]

BLAST of Cmc10g0275371 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-28
Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 3   SLESNKTWHLLDLPPRCKAIGCKWV--LGRNSNLMEEKYKARLVAKGFRQRENIDFFDTF 62
           ++E+  TW +  LPP  K IGCKWV  +  NS+   E+YKARLVAKG+ Q+E IDF +TF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167

Query: 63  SSITRISLIRVLISIAAQNNLLIHQMDVKTAFLNGDLKEEIYMKQPEGFIVHDQES---- 122
           S + +++ ++++++I+A  N  +HQ+D+  AFLNGDL EEIYMK P G+     +S    
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227

Query: 123 KICKLDKS 125
            +C L KS
Sbjct: 228 AVCYLKKS 235

[Close]

BLAST of Cmc10g0275371 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1   MDSLESNKTWHLLDLPPRCKAIGCKWVLGR--NSNLMEEKYKARLVAKGFRQRENIDFFD 60
           +D+L  NKTW L+  P     +GCKWV     +S+   ++ KARLVAKGF Q E I F +
Sbjct: 48  LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107

Query: 61  TFSSITRISLIRVLISIAAQ 79
           T+S + R + IR ++++A Q
Sbjct: 108 TYSPVVRTATIRTILNVAQQ 127

The following BLAST results are available for this feature:

BLAST of Cmc10g0275371 vs. NCBI nr


Match Name	E-value	Identity	Description
GAU21337.1	2.0e-48	76.98	hypothetical protein TSUD_189240 [Trifolium subterraneum]	[more]
TYK22685.1	2.0e-48	79.37	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0059671.1	2.0e-48	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK11906.1	2.0e-48	80.95	putative Polyprotein [Cucumis melo var. makuwa]	[more]
GAU47690.1	7.7e-48	76.19	hypothetical protein TSUD_245810 [Trifolium subterraneum]	[more]

BLAST of Cmc10g0275371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.4e-28	48.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-22	45.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.8e-22	41.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-21	40.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	3.5e-11	42.50	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc10g0275371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1T0	9.8e-49	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2Z6MWZ1	9.8e-49	76.98	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt...	[more]
A0A5D3DGJ1	9.8e-49	79.37	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3CNA1	9.8e-49	80.95	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177...	[more]
A0A2Z6PC97	3.7e-48	76.19	CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_24...	[more]

BLAST of Cmc10g0275371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.5e-28	46.09	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.5e-12	42.50	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 7..124 e-value: 5.1E-43 score: 147.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 14..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0275371.1	Cmc10g0275371.1	mRNA