Cmc10g0275311 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0275311
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
LocationCMiso1.1chr10: 9198704 .. 9199345 (-)
RNA-Seq ExpressionCmc10g0275311
SyntenyCmc10g0275311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGAGAAGATATTGAGAAAACAACATTTAGAACACACGAGGGACACTATGAATTCTTAGTGATGCCCTTTGGTTTAACAAATGCGCCAGCTACCTTTCAATCTCTTATGAATTCTATTTTTCGGTCATATCTGAGGAAGTTCGTTTTGATATTTTTTGATGATATTTTGATTTATAGTCGAGGGATGGAGGAGCATATATATCATTTAGAGTTGGTGTTTGAAGTATTACGTGAACATAAGCTTTATGCTAACAAGAAGAAGTGCAGTTTTGCTTTTCAAAGAGTAGAGTATCTTGGCCATATTGTTTCAGGTCAAGGGGTGGAAGTGGATACGGAGAAAATTAAATCCATTAAACAGTGGCCAGTTCTTTCCAATGTGAAAGAATTACGGGGATTTTTGGGGCTGACCGGATACTATCGAAGATTTATGCAAAATTACGGTTCTATTGCTGCCCCACTGACTCAATTATTGAAATTGGGAGCTTTTAGATGGACCGAAGACAGTCAGACAACGTTTGATAGATTAAAAGAGGCCATGATGACATTGCCAGTTCTGGCATTACCAGATTTTAGCCTTCCGTTTGAGATGGAAACAGATTTTAGCCTTCCGTGTGGGGGCAGTATTAATGCAAAATAA

mRNA sequence

ATGCATAGAGAAGATATTGAGAAAACAACATTTAGAACACACGAGGGACACTATGAATTCTTAGTGATGCCCTTTGGTTTAACAAATGCGCCAGCTACCTTTCAATCTCTTATGAATTCTATTTTTCGGTCATATCTGAGGAAGTTCGTTTTGATATTTTTTGATGATATTTTGATTTATAGTCGAGGGATGGAGGAGCATATATATCATTTAGAGTTGGTGTTTGAAGTATTACGTGAACATAAGCTTTATGCTAACAAGAAGAAGTGCAGTTTTGCTTTTCAAAGAGTAGAGTATCTTGGCCATATTGTTTCAGGTCAAGGGGTGGAAGTGGATACGGAGAAAATTAAATCCATTAAACAGTGGCCAGTTCTTTCCAATGTGAAAGAATTACGGGGATTTTTGGGGCTGACCGGATACTATCGAAGATTTATGCAAAATTACGGTTCTATTGCTGCCCCACTGACTCAATTATTGAAATTGGGAGCTTTTAGATGGACCGAAGACAGTCAGACAACGTTTGATAGATTAAAAGAGGCCATGATGACATTGCCAGTTCTGGCATTACCAGATTTTAGCCTTCCGTTTGAGATGGAAACAGATTTTAGCCTTCCGTGTGGGGGCAGTATTAATGCAAAATAA

Coding sequence (CDS)

ATGCATAGAGAAGATATTGAGAAAACAACATTTAGAACACACGAGGGACACTATGAATTCTTAGTGATGCCCTTTGGTTTAACAAATGCGCCAGCTACCTTTCAATCTCTTATGAATTCTATTTTTCGGTCATATCTGAGGAAGTTCGTTTTGATATTTTTTGATGATATTTTGATTTATAGTCGAGGGATGGAGGAGCATATATATCATTTAGAGTTGGTGTTTGAAGTATTACGTGAACATAAGCTTTATGCTAACAAGAAGAAGTGCAGTTTTGCTTTTCAAAGAGTAGAGTATCTTGGCCATATTGTTTCAGGTCAAGGGGTGGAAGTGGATACGGAGAAAATTAAATCCATTAAACAGTGGCCAGTTCTTTCCAATGTGAAAGAATTACGGGGATTTTTGGGGCTGACCGGATACTATCGAAGATTTATGCAAAATTACGGTTCTATTGCTGCCCCACTGACTCAATTATTGAAATTGGGAGCTTTTAGATGGACCGAAGACAGTCAGACAACGTTTGATAGATTAAAAGAGGCCATGATGACATTGCCAGTTCTGGCATTACCAGATTTTAGCCTTCCGTTTGAGATGGAAACAGATTTTAGCCTTCCGTGTGGGGGCAGTATTAATGCAAAATAA

Protein sequence

MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIYSRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIKQWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEAMMTLPVLALPDFSLPFEMETDFSLPCGGSINAK
Homology
BLAST of Cmc10g0275311 vs. NCBI nr
Match: KAA0041253.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 5.0e-84
Identity = 146/203 (71.92%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKTTFRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 176 MHPEDIEKTTFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKRFLRRFVLVFFDDILIY 235

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 236 SKGMEEHRQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISMRGIEVDPEKIRAVK 295

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  SNV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++  F++LK+A
Sbjct: 296 EWPAPSNVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKA 355

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDAS 378

BLAST of Cmc10g0275311 vs. NCBI nr
Match: TYK16053.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 5.0e-84
Identity = 146/203 (71.92%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKTTFRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 176 MHPEDIEKTTFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKRFLRRFVLVFFDDILIY 235

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 236 SKGMEEHRQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISMRGIEVDPEKIRAVK 295

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  SNV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++  F++LK+A
Sbjct: 296 EWPAPSNVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKA 355

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDAS 378

BLAST of Cmc10g0275311 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1    MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
            MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 1042 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 1101

Query: 61   SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
            S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 1102 SKGMEEHGQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 1161

Query: 121  QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
            +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 1162 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 1221

Query: 181  MMTLPVLALPDFSLPFEMETDFS 204
            MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 1222 MMTLPVLAMPDFNLPFEIESDAS 1244

BLAST of Cmc10g0275311 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-83
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 722 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 781

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 782 SKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 841

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 842 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 901

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 902 MMTLPVLAMPDFNLPFEIESDAS 924

BLAST of Cmc10g0275311 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-83
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 782 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 841

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 842 SKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 901

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 902 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 961

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 962 MMTLPVLAMPDFNLPFEIESDAS 984

BLAST of Cmc10g0275311 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.0e-44
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           M  E + KT F T  GHYE+L MPFGL NAPATFQ  MN I R  L K  L++ DDI+++
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S  ++EH+  L LVFE L +  L     KC F  Q   +LGH+++  G++ + EKI++I+
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQ--TTFDRLK 180
           ++P+ +  KE++ FLGLTGYYR+F+ N+  IA P+T+ LK      T + +  + F +LK
Sbjct: 432 KYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

Query: 181 EAMMTLPVLALPDFSLPFEMETDFS 204
             +   P+L +PDF+  F + TD S
Sbjct: 492 YLISEDPILKVPDFTKKFTLTTDAS 516

BLAST of Cmc10g0275311 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 91/205 (44.39%), Postives = 125/205 (60.98%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           M  E I KT F T  GHYE+L MPFGL NAPATFQ  MN+I R  L K  L++ DDI+I+
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S  + EH+  ++LVF  L +  L     KC F  +   +LGHIV+  G++ +  K+K+I 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQ--TTFDRLK 180
            +P+ +  KE+R FLGLTGYYR+F+ NY  IA P+T  LK      T+  +    F++LK
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

Query: 181 EAMMTLPVLALPDFSLPFEMETDFS 204
             ++  P+L LPDF   F + TD S
Sbjct: 491 ALIIRDPILQLPDFEKKFVLTTDAS 515

BLAST of Cmc10g0275311 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-38
Identity = 83/216 (38.43%), Postives = 128/216 (59.26%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           M   DI KT F T  G YEFL +PFGL NAPA FQ +++ I R ++ K   ++ DDI+++
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S   + H  +L LV   L +  L  N +K  F   +VE+LG+IV+  G++ D +K+++I 
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQT-------- 180
           + P  ++VKEL+ FLG+T YYR+F+Q+Y  +A PLT L + G +   + SQ+        
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR-GLYANIKSSQSSKVPITLD 407

Query: 181 -----TFDRLKEAMMTLPVLALPDFSLPFEMETDFS 204
                +F+ LK  + +  +LA P F+ PF + TD S
Sbjct: 408 ETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDAS 442

BLAST of Cmc10g0275311 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-35
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 70  HLELVFEVLREHKLYANKKKCSFAFQRVEYLG--HIVSGQGVEVDTEKIKSIKQWPVLSN 129
           HL +V ++  +H+ YAN+KKC+F   ++ YLG  HI+SG+GV  D  K++++  WP   N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 130 VKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEAMMTLPVL 189
             ELRGFLGLTGYYRRF++NYG I  PLT+LLK  + +WTE +   F  LK A+ TLPVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 190 ALPDFSLPF 197
           ALPD  LPF
Sbjct: 123 ALPDLKLPF 131

BLAST of Cmc10g0275311 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 82/203 (40.39%), Postives = 111/203 (54.68%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           M  +D  KT F T  G YE+ VMPFGL NAP+TF   M   FR    +FV ++ DDILI+
Sbjct: 696 MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 755

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S   EEH  HL+ V E L+   L   KKKC FA +  E+LG+ +  Q +     K  +I+
Sbjct: 756 SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 815

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
            +P    VK+ + FLG+  YYRRF+ N   IA P+ QL      +WTE      D+LK+A
Sbjct: 816 DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIDKLKDA 875

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           +   PVL   +    + + TD S
Sbjct: 876 LCNSPVLVPFNNKANYRLTTDAS 895

BLAST of Cmc10g0275311 vs. ExPASy TrEMBL
Match: A0A5A7TDM4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002330 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.4e-84
Identity = 146/203 (71.92%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKTTFRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 176 MHPEDIEKTTFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKRFLRRFVLVFFDDILIY 235

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 236 SKGMEEHRQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISMRGIEVDPEKIRAVK 295

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  SNV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++  F++LK+A
Sbjct: 296 EWPAPSNVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKA 355

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDAS 378

BLAST of Cmc10g0275311 vs. ExPASy TrEMBL
Match: A0A5D3CW07 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00650 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.4e-84
Identity = 146/203 (71.92%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKTTFRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 176 MHPEDIEKTTFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKRFLRRFVLVFFDDILIY 235

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 236 SKGMEEHRQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISMRGIEVDPEKIRAVK 295

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  SNV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++  F++LK+A
Sbjct: 296 EWPAPSNVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKA 355

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDAS 378

BLAST of Cmc10g0275311 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.4e-84
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1    MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
            MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 1042 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 1101

Query: 61   SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
            S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 1102 SKGMEEHGQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 1161

Query: 121  QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
            +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 1162 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 1221

Query: 181  MMTLPVLALPDFSLPFEMETDFS 204
            MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 1222 MMTLPVLAMPDFNLPFEIESDAS 1244

BLAST of Cmc10g0275311 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 7.1e-84
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 782 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 841

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 842 SKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 901

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 902 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 961

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 962 MMTLPVLAMPDFNLPFEIESDAS 984

BLAST of Cmc10g0275311 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 7.1e-84
Identity = 145/203 (71.43%), Postives = 181/203 (89.16%), Query Frame = 0

Query: 1   MHREDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNSIFRSYLRKFVLIFFDDILIY 60
           MH EDIEKT FRTHEGHYEF+VMPFGLTNAP+TFQ+LMN +F+ +LR+FVL+FFDDILIY
Sbjct: 782 MHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIY 841

Query: 61  SRGMEEHIYHLELVFEVLREHKLYANKKKCSFAFQRVEYLGHIVSGQGVEVDTEKIKSIK 120
           S+GMEEH  HLE+V E+LRE +LYAN  KC FA  R+ YLGH +S +G+EVD EKI+++K
Sbjct: 842 SKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVK 901

Query: 121 QWPVLSNVKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEA 180
           +WP  +NV+ELRGFLGLTGYYRRF+QNYGSI+APLTQLLK GA++WTE+++T F++LK+A
Sbjct: 902 EWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKA 961

Query: 181 MMTLPVLALPDFSLPFEMETDFS 204
           MMTLPVLA+PDF+LPFE+E+D S
Sbjct: 962 MMTLPVLAMPDFNLPFEIESDAS 984

BLAST of Cmc10g0275311 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-36
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 0

Query: 70  HLELVFEVLREHKLYANKKKCSFAFQRVEYLG--HIVSGQGVEVDTEKIKSIKQWPVLSN 129
           HL +V ++  +H+ YAN+KKC+F   ++ YLG  HI+SG+GV  D  K++++  WP   N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 130 VKELRGFLGLTGYYRRFMQNYGSIAAPLTQLLKLGAFRWTEDSQTTFDRLKEAMMTLPVL 189
             ELRGFLGLTGYYRRF++NYG I  PLT+LLK  + +WTE +   F  LK A+ TLPVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 190 ALPDFSLPF 197
           ALPD  LPF
Sbjct: 123 ALPDLKLPF 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041253.15.0e-8471.92Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK16053.15.0e-8471.92Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0025132.11.1e-8371.43Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK23090.11.5e-8371.43Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15990.11.5e-8371.43Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P043239.0e-4442.93Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208251.2e-4344.39Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P95.6e-3838.43Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P925233.4e-3553.49Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Q993151.0e-3440.39Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5A7TDM42.4e-8471.92Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CW072.4e-8471.92Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SIV75.4e-8471.43Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CXB17.1e-8471.43Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2S17.1e-8471.43Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
ATMG00860.12.4e-3653.49DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 30..104
e-value: 2.6E-41
score: 143.3
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 113..194
e-value: 2.5E-27
score: 96.7
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 12..103
e-value: 1.9E-21
score: 76.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..104
score: 12.544938
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 166..204
e-value: 4.5E-9
score: 36.2
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 2..29
e-value: 2.6E-41
score: 143.3
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 32..185
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 32..185
NoneNo IPR availableCDDcd01647RT_LTRcoord: 1..104
e-value: 1.02834E-55
score: 173.165
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..203

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0275311.1Cmc10g0275311.1mRNA