Cmc10g0275251 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0275251
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionlysine-specific histone demethylase 1 homolog 2
LocationCMiso1.1chr10: 9143476 .. 9143855 (-)
RNA-Seq ExpressionCmc10g0275251
SyntenyCmc10g0275251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATCGGTTGCTATTGCTCCTCTGTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTCCAATCGATGGTTATTATGGTCGCCGGTTGTCATTTGTCCTCTACAAGTTTCTCTATCTCTTTCTCTCTCTAAACTCCAGTTTCAGCCGTTGTTACCATTGTACGAGGATTTAACATAATAGATGATTTTGTATAGAAGTATATAAAGAGTGTTTTAAAGAAGAAGAAAAAGGGTAACATGAAGGATCTAGAGAAAGAGACGGAAGTTGAGGTTATGATAGCATTATTGGTTGGATTCCCGATTGATGACCTGCTTGAGGAAGATATTAAAGCTAGGTGA

mRNA sequence

ATGGTCATCGGTTGCTATTGCTCCTCTTATATAAAGAGTGTTTTAAAGAAGAAGAAAAAGGGTAACATGAAGGATCTAGAGAAAGAGACGGAAGTTGAGGTTATGATAGCATTATTGGTTGGATTCCCGATTGATGACCTGCTTGAGGAAGATATTAAAGCTAGGTGA

Coding sequence (CDS)

ATGGTCATCGGTTGCTATTGCTCCTCTTATATAAAGAGTGTTTTAAAGAAGAAGAAAAAGGGTAACATGAAGGATCTAGAGAAAGAGACGGAAGTTGAGGTTATGATAGCATTATTGGTTGGATTCCCGATTGATGACCTGCTTGAGGAAGATATTAAAGCTAGGTGA

Protein sequence

MVIGCYCSSYIKSVLKKKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKAR
Homology
BLAST of Cmc10g0275251 vs. NCBI nr
Match: KAA0036809.1 (lysine-specific histone demethylase 1-like protein 2 isoform X1 [Cucumis melo var. makuwa] >TYJ95877.1 lysine-specific histone demethylase 1-like protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. NCBI nr
Match: XP_008454649.1 (PREDICTED: lysine-specific histone demethylase 1 homolog 2 isoform X1 [Cucumis melo] >XP_008454650.1 PREDICTED: lysine-specific histone demethylase 1 homolog 2 isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. NCBI nr
Match: XP_004150111.2 (lysine-specific histone demethylase 1 homolog 2 [Cucumis sativus] >XP_011652386.1 lysine-specific histone demethylase 1 homolog 2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. NCBI nr
Match: XP_022941324.1 (lysine-specific histone demethylase 1 homolog 2-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 15 LKKKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKAR 56
          + KKK    KDLEKETE+E MIAL VGFPID LLEE+IKAR
Sbjct: 39 VSKKKSKTAKDLEKETEIEAMIALSVGFPIDALLEEEIKAR 79

BLAST of Cmc10g0275251 vs. NCBI nr
Match: XP_022941323.1 (lysine-specific histone demethylase 1 homolog 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 15 LKKKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKAR 56
          + KKK    KDLEKETE+E MIAL VGFPID LLEE+IKAR
Sbjct: 39 VSKKKSKTAKDLEKETEIEAMIALSVGFPIDALLEEEIKAR 79

BLAST of Cmc10g0275251 vs. ExPASy Swiss-Prot
Match: Q9LID0 (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=LDL2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-06
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 17 KKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          KKK    +DLEKETE E +IAL VGFPID+LLEE+I+A
Sbjct: 41 KKKYRTKQDLEKETETEALIALSVGFPIDELLEEEIRA 78

BLAST of Cmc10g0275251 vs. ExPASy TrEMBL
Match: A0A1S3BYN9 (lysine-specific histone demethylase 1 homolog 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495004 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. ExPASy TrEMBL
Match: A0A5D3B9S1 (Lysine-specific histone demethylase 1-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001720 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. ExPASy TrEMBL
Match: A0A0A0LFX3 (SWIRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G851830 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 6  YCSSYIKSVLKKKKKG-NMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          +   +I  V KKKKKG   KDLEKETE+E MIAL VGFPID LL+E+IKA
Sbjct: 31 FVEKHIGGVSKKKKKGKTAKDLEKETEIEAMIALSVGFPIDALLDEEIKA 80

BLAST of Cmc10g0275251 vs. ExPASy TrEMBL
Match: A0A6J1IZB6 (lysine-specific histone demethylase 1 homolog 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480517 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 15 LKKKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKAR 56
          + KKK    KDLEKETE+E MIAL VGFPID LLEE+IKAR
Sbjct: 39 VSKKKSKTAKDLEKETEIEAMIALSVGFPIDALLEEEIKAR 79

BLAST of Cmc10g0275251 vs. ExPASy TrEMBL
Match: A0A6J1J1P3 (lysine-specific histone demethylase 1 homolog 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480517 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 15 LKKKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKAR 56
          + KKK    KDLEKETE+E MIAL VGFPID LLEE+IKAR
Sbjct: 39 VSKKKSKTAKDLEKETEIEAMIALSVGFPIDALLEEEIKAR 79

BLAST of Cmc10g0275251 vs. TAIR 10
Match: AT3G13682.1 (LSD1-like2 )

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 17 KKKKGNMKDLEKETEVEVMIALLVGFPIDDLLEEDIKA 55
          KKK    +DLEKETE E +IAL VGFPID+LLEE+I+A
Sbjct: 41 KKKYRTKQDLEKETETEALIALSVGFPIDELLEEEIRA 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036809.14.1e-0666.00lysine-specific histone demethylase 1-like protein 2 isoform X1 [Cucumis melo va... [more]
XP_008454649.14.1e-0666.00PREDICTED: lysine-specific histone demethylase 1 homolog 2 isoform X1 [Cucumis m... [more]
XP_004150111.24.1e-0666.00lysine-specific histone demethylase 1 homolog 2 [Cucumis sativus] >XP_011652386.... [more]
XP_022941324.11.2e-0573.17lysine-specific histone demethylase 1 homolog 2-like isoform X3 [Cucurbita mosch... [more]
XP_022941323.11.2e-0573.17lysine-specific histone demethylase 1 homolog 2-like isoform X2 [Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
Q9LID01.5e-0668.42Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A1S3BYN92.0e-0666.00lysine-specific histone demethylase 1 homolog 2 isoform X1 OS=Cucumis melo OX=36... [more]
A0A5D3B9S12.0e-0666.00Lysine-specific histone demethylase 1-like protein 2 isoform X1 OS=Cucumis melo ... [more]
A0A0A0LFX32.0e-0666.00SWIRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G851830 PE=3 ... [more]
A0A6J1IZB65.8e-0673.17lysine-specific histone demethylase 1 homolog 2-like isoform X2 OS=Cucurbita max... [more]
A0A6J1J1P35.8e-0673.17lysine-specific histone demethylase 1 homolog 2-like isoform X1 OS=Cucurbita max... [more]
Match NameE-valueIdentityDescription
AT3G13682.11.0e-0768.42LSD1-like2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0275251.1Cmc10g0275251.1mRNA